Mercurial > repos > nml > find_repeats
comparison find-repeats.xml @ 1:7e6be57de1a0 draft default tip
"planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 57067916cb7b9c5b65c1da59d4bbb846c3e3af2f"
| author | nml |
|---|---|
| date | Tue, 23 Jun 2020 10:26:42 -0400 |
| parents | 7f27672ff880 |
| children |
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| 0:7f27672ff880 | 1:7e6be57de1a0 |
|---|---|
| 1 <tool id="findrepeat" name="Find Repeats" version ="1.8.2"> | 1 <tool id="findrepeat" name="Find Repeats" version ="@VERSION@+galaxy1"> |
| 2 <description>Identify repeat elements using Mummer</description> | 2 <description>Identify repeat elements using Mummer</description> |
| 3 <requirements> | 3 <macros> |
| 4 <requirement type="package" version="1.8.2">snvphyl-tools</requirement> | 4 <import>macros.xml</import> |
| 5 </macros> | |
| 6 <expand macro="requirements"> | |
| 5 <requirement type="package" version="3.23">mummer</requirement> | 7 <requirement type="package" version="3.23">mummer</requirement> |
| 6 </requirements> | 8 </expand> |
| 7 <command detect_errors="exit_code"> | 9 <command detect_errors="exit_code"> |
| 8 find-repeats.pl -l $length -p $pid $fasta > $out | 10 find-repeats.pl -l $length -p $pid $fasta > $out |
| 9 </command> | 11 </command> |
| 10 <inputs> | 12 <inputs> |
| 11 <param name="fasta" type="data" label="Fasta file" format="fasta"/> | 13 <param name="fasta" type="data" label="Fasta file" format="fasta"/> |
| 39 | 41 |
| 40 **Options** | 42 **Options** |
| 41 - Minimum length of repeat region (150). | 43 - Minimum length of repeat region (150). |
| 42 - Minimum PID of repeat region (90). | 44 - Minimum PID of repeat region (90). |
| 43 </help> | 45 </help> |
| 44 <citations> | 46 <expand macro="citations"> |
| 45 </citations> | 47 <citation type="doi">10.1186/gb-2004-5-2-r12</citation> |
| 48 </expand> | |
| 46 </tool> | 49 </tool> |