Mercurial > repos > nml > find_repeats
changeset 1:7e6be57de1a0 draft default tip
"planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 57067916cb7b9c5b65c1da59d4bbb846c3e3af2f"
| author | nml |
|---|---|
| date | Tue, 23 Jun 2020 10:26:42 -0400 |
| parents | 7f27672ff880 |
| children | |
| files | find-repeats.xml macros.xml |
| diffstat | 2 files changed, 25 insertions(+), 6 deletions(-) [+] |
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--- a/find-repeats.xml Tue Aug 27 12:31:52 2019 -0400 +++ b/find-repeats.xml Tue Jun 23 10:26:42 2020 -0400 @@ -1,9 +1,11 @@ -<tool id="findrepeat" name="Find Repeats" version ="1.8.2"> +<tool id="findrepeat" name="Find Repeats" version ="@VERSION@+galaxy1"> <description>Identify repeat elements using Mummer</description> - <requirements> - <requirement type="package" version="1.8.2">snvphyl-tools</requirement> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements"> <requirement type="package" version="3.23">mummer</requirement> - </requirements> + </expand> <command detect_errors="exit_code"> find-repeats.pl -l $length -p $pid $fasta > $out </command> @@ -41,6 +43,7 @@ - Minimum length of repeat region (150). - Minimum PID of repeat region (90). </help> -<citations> -</citations> + <expand macro="citations"> + <citation type="doi">10.1186/gb-2004-5-2-r12</citation> + </expand> </tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Tue Jun 23 10:26:42 2020 -0400 @@ -0,0 +1,16 @@ +<macros> + <token name="@VERSION@">1.8.2</token> + + <xml name="requirements"> + <requirements> + <requirement type="package" version="@VERSION@">snvphyl-tools</requirement> + <yield/> + </requirements> + </xml> + <xml name="citations"> + <citations> + <citation type="doi">10.1099/mgen.0.000116</citation> + <yield/> + </citations> + </xml> +</macros>