Mercurial > repos > nml > gnali
comparison gnali.xml @ 7:2b1154ae7e21 draft default tip
"planemo upload for repository https://github.com/phac-nml/gnali/ commit c3a811e4bb8ba8a718047c3324809175ad23291b"
| author | nml |
|---|---|
| date | Thu, 29 Jul 2021 19:17:40 +0000 |
| parents | d1085589a5a7 |
| children |
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| 6:d1085589a5a7 | 7:2b1154ae7e21 |
|---|---|
| 64 <filter>vcf_output</filter> | 64 <filter>vcf_output</filter> |
| 65 </data> | 65 </data> |
| 66 </outputs> | 66 </outputs> |
| 67 <tests> | 67 <tests> |
| 68 <test> | 68 <test> |
| 69 <param name="test_genes" value="test_genes.txt"/> | 69 <param name="test_genes" value="gnomadv2_input.txt"/> |
| 70 <param name="predefined_filters" value="homozygous-controls"/> | 70 <param name="predefined_filters" value="homozygous-controls"/> |
| 71 <param name="pop_freqs" value="--pop_freqs"/> | 71 <param name="pop_freqs" value="--pop_freqs"/> |
| 72 <param name="vcf_output" value="--vcf"/> | 72 <param name="vcf_output" value="--vcf"/> |
| 73 <output name="basic_output" | 73 <output name="basic_output" |
| 74 value="results/Nonessential_Host_Genes_Basic.txt" | 74 value="gnomadv2_results/Nonessential_Host_Genes_Basic.txt" |
| 75 ftype="txt" | 75 ftype="txt" |
| 76 compare="diff"> | 76 compare="diff"> |
| 77 </output> | 77 </output> |
| 78 <output name="detailed_output" | 78 <output name="detailed_output" |
| 79 value="results/Nonessential_Host_Genes_Detailed.txt" | 79 value="gnomadv2_results/Nonessential_Host_Genes_Detailed.txt" |
| 80 ftype="txt" | 80 ftype="txt" |
| 81 compare="diff"> | 81 compare="diff"> |
| 82 </output> | 82 </output> |
| 83 <output name="variants_vcf_output" | 83 <output name="variants_vcf_output" |
| 84 value="results/Nonessential_Gene_Variants.vcf" | 84 value="gnomadv2_results/Nonessential_Gene_Variants.vcf" |
| 85 ftype="vcf" | |
| 86 compare="diff"> | |
| 87 </output> | |
| 88 </test> | |
| 89 <test> | |
| 90 <param name="test_genes" value="gnomadv3_input.txt"/> | |
| 91 <conditional name="database_info"> | |
| 92 <param name="database" value="gnomadv3.1.1"/> | |
| 93 </conditional> | |
| 94 <param name="predefined_filters" value="homozygous"/> | |
| 95 <param name="pop_freqs" value="--pop_freqs"/> | |
| 96 <param name="vcf_output" value="--vcf"/> | |
| 97 <output name="basic_output" | |
| 98 value="gnomadv3_results/Nonessential_Host_Genes_Basic.txt" | |
| 99 ftype="txt" | |
| 100 compare="diff"> | |
| 101 </output> | |
| 102 <output name="detailed_output" | |
| 103 value="gnomadv3_results/Nonessential_Host_Genes_Detailed.txt" | |
| 104 ftype="txt" | |
| 105 compare="diff"> | |
| 106 </output> | |
| 107 <output name="variants_vcf_output" | |
| 108 value="gnomadv3_results/Nonessential_Gene_Variants.vcf" | |
| 85 ftype="vcf" | 109 ftype="vcf" |
| 86 compare="diff"> | 110 compare="diff"> |
| 87 </output> | 111 </output> |
| 88 </test> | 112 </test> |
| 89 </tests> | 113 </tests> |