# HG changeset patch
# User nml
# Date 1620141223 0
# Node ID 65521c432f58fe95acd5777a4a2c4fc976ec1777
# Parent  b6e197aac430ed72607e0d689fbcff4fcdff7068
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 5e4f4952910cf0b43a7c22bac43a51e1264bd567"

diff -r b6e197aac430 -r 65521c432f58 gnali.xml
--- a/gnali.xml	Fri Mar 19 13:29:55 2021 +0000
+++ b/gnali.xml	Tue May 04 15:13:43 2021 +0000
@@ -1,4 +1,4 @@
-<tool id="gnali" name="gNALI" version="1.0.3" python_template_version="3.7">
+<tool id="gnali" name="gNALI" version="@VERSION@" python_template_version="3.7">
     <description>Get nonessential, LoF variants</description>
     <macros>
         <import>macros.xml</import>
diff -r b6e197aac430 -r 65521c432f58 macros.xml
--- a/macros.xml	Fri Mar 19 13:29:55 2021 +0000
+++ b/macros.xml	Tue May 04 15:13:43 2021 +0000
@@ -1,5 +1,5 @@
 <macros>
-    <token name="@VERSION@">1.0.3</token>
+    <token name="@VERSION@">1.0.4</token>
     <xml name="requirements">
     <requirements>
     <requirement type="package" version ="@VERSION@">gnali</requirement>
diff -r b6e197aac430 -r 65521c432f58 test-data/results/Nonessential_Host_Genes_Detailed.txt
--- a/test-data/results/Nonessential_Host_Genes_Detailed.txt	Fri Mar 19 13:29:55 2021 +0000
+++ b/test-data/results/Nonessential_Host_Genes_Detailed.txt	Tue May 04 15:13:43 2021 +0000
@@ -2,4 +2,4 @@
 3	46414935	rs938517991	AT	A	9974.16	PASS	-	frameshift_variant	CCR5	ENSG00000160791	0	16192	0.0000000000e+00	0	10066	0.0000000000e+00	2	113380	1.7639800000e-05	0	21600	0.0000000000e+00	0	30616	0.0000000000e+00	0	34578	0.0000000000e+00	0	18394	0.0000000000e+00	0	0.0000000000e+00	6120	0	0.0000000000e+00	135678	2	115268	1.7350900000e-05
 3	46414943	rs775750898	TACAGTCAGTATCAATTCTGGAAGAATTTCCAG	T	74264261.52	PASS	-	frameshift_variant	CCR5	ENSG00000160791	311	16196	1.9202300000e-02	1296	10068	1.2872500000e-01	12203	113462	1.0755100000e-01	2881	21580	1.3350300000e-01	489	30610	1.5975200000e-02	1014	34580	2.9323300000e-02	2	18392	1.0874300000e-04	444	7.2572700000e-02	6118	10108	7.4499900000e-02	135678	8532	115328	7.3980300000e-02
 3	46415066	rs146972949	C	T	120238.89	PASS	T	stop_gained	CCR5	ENSG00000160791	23	16252	1.4152100000e-03	0	10016	0.0000000000e+00	8	113418	7.0535500000e-05	0	21590	0.0000000000e+00	0	30566	0.0000000000e+00	3	34516	8.6916200000e-05	0	18382	0.0000000000e+00	0	0.0000000000e+00	6108	14	1.0326900000e-04	135568	20	115280	1.7349100000e-04
-3	46414943	rs775750898	TACAGTCAGTATCAATTCTGGAAGAATTTCCAG	T	1947603.90	PASS	-	frameshift_variant	CCR5	ENSG00000160791	168	8706	1.9297000000e-02	35	290	1.2069000000e-01	1621	15392	1.0531400000e-01	478	3468	1.3783200000e-01				23	848	2.7122600000e-02	0	1558	0.0000000000e+00	102	9.3922700000e-02	1086	1289	7.3893600000e-02	17444	1138	13904	8.1847000000e-02
+3	46414943	rs775750898	TACAGTCAGTATCAATTCTGGAAGAATTTCCAG	T	1947603.90	PASS	-	frameshift_variant	CCR5	ENSG00000160791	168	8706	1.9297000000e-02	35	290	1.2069000000e-01	1621	15392	1.0531400000e-01	478	3468	1.3783200000e-01	-	-	-	23	848	2.7122600000e-02	0	1558	0.0000000000e+00	102	9.3922700000e-02	1086	1289	7.3893600000e-02	17444	1138	13904	8.1847000000e-02