comparison metaspades.xml @ 3:2ecf5a570907 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaspades commit 92f173d5036d86d6fd689c65b5a0fc2586d37697"

2:05c394313b1c

    <stdio>
        <exit_code range="1:" />
    </stdio>
    <command>
    <![CDATA[
    ## A real command looks like: spades.py -k 21,33,55,77,99,127 --careful -1 Y.fastq.gz -2 X.fastq.gz -t 24 -o output
    spades.py -o . --disable-gzip-output --meta $onlyassembler -t \${GALAXY_SLOTS:-16}
    #if not $kmer_choice.auto_kmer_choice:
        -k "$kmer_choice.kmers"
    #end if
    ## Sequence files
    #set num=1

3:2ecf5a570907

    <stdio>
        <exit_code range="1:" />
    </stdio>
    <command>
    <![CDATA[

    if [[ -n \$GALAXY_MEMORY_MB ]]; then
        GALAXY_MEMORY_GB=\$(( GALAXY_MEMORY_MB / 1024 ));
    fi &&

    ## A real command looks like: spades.py -k 21,33,55,77,99,127 --careful -1 Y.fastq.gz -2 X.fastq.gz -t 24 -o output
    spades.py -o . --disable-gzip-output --meta $onlyassembler -t \${GALAXY_SLOTS:-16} -m \${GALAXY_MEMORY_GB:-250}
    #if not $kmer_choice.auto_kmer_choice:
        -k "$kmer_choice.kmers"
    #end if
    ## Sequence files
    #set num=1