# HG changeset patch
# User iuc
# Date 1610713706 0
# Node ID 2ecf5a570907984787889f1bd4a119cc2939fee8
# Parent  05c394313b1c99ff2ae7f30b5e0750ba3c6189e3
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaspades commit 92f173d5036d86d6fd689c65b5a0fc2586d37697"

diff -r 05c394313b1c -r 2ecf5a570907 metaspades.xml
--- a/metaspades.xml	Tue Nov 06 12:21:15 2018 -0500
+++ b/metaspades.xml	Fri Jan 15 12:28:26 2021 +0000
@@ -8,8 +8,13 @@
     </stdio>
     <command>
     <![CDATA[
+
+    if [[ -n \$GALAXY_MEMORY_MB ]]; then
+        GALAXY_MEMORY_GB=\$(( GALAXY_MEMORY_MB / 1024 ));
+    fi &&
+
     ## A real command looks like: spades.py -k 21,33,55,77,99,127 --careful -1 Y.fastq.gz -2 X.fastq.gz -t 24 -o output
-    spades.py -o . --disable-gzip-output --meta $onlyassembler -t \${GALAXY_SLOTS:-16}
+    spades.py -o . --disable-gzip-output --meta $onlyassembler -t \${GALAXY_SLOTS:-16} -m \${GALAXY_MEMORY_GB:-250}
     #if not $kmer_choice.auto_kmer_choice:
         -k "$kmer_choice.kmers"
     #end if