Mercurial > repos > nml > mykrobe_parser

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Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/phac-nml/mykrobe-parser commit 97945a3ad655f1a0f99f577d0d423124460d900a
author nml
date Tue, 24 Oct 2023 21:28:06 +0000
parents 8e7e5a660942
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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179 "_cls": "Call.VariantCall"
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190 "phylogenetics": {
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191 "phylo_group": {
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192 "Mycobacterium_tuberculosis_complex": {
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208 },
8e7e5a660942 planemo upload for repository https://github.com/phac-nml/mykrobe-parser commit 077a66175f3666924b42f216bbcb671ee0d026f2
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209 "lineage": {
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210 "East_Africa_Indian_ocean": {
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211 "percent_coverage": 100.0,
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212 "median_depth": 193
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213 }
8e7e5a660942 planemo upload for repository https://github.com/phac-nml/mykrobe-parser commit 077a66175f3666924b42f216bbcb671ee0d026f2
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214 }
8e7e5a660942 planemo upload for repository https://github.com/phac-nml/mykrobe-parser commit 077a66175f3666924b42f216bbcb671ee0d026f2
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215 },
8e7e5a660942 planemo upload for repository https://github.com/phac-nml/mykrobe-parser commit 077a66175f3666924b42f216bbcb671ee0d026f2
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216 "kmer": 21,
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217 "probe_sets": [
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218 "tb-species-170421.fasta.gz",
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219 "tb-hunt-probe-set-jan-03-2019.fasta.gz"
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220 ],
8e7e5a660942 planemo upload for repository https://github.com/phac-nml/mykrobe-parser commit 077a66175f3666924b42f216bbcb671ee0d026f2
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221 "files": [
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222 "ERR3335753_1.fastq",
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223 "ERR3335753_2.fastq"
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224 ],
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225 "version": {
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226 "mykrobe-predictor": "v0.10.0",
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227 "mykrobe-atlas": "v0.10.0"
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228 },
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229 "genotype_model": "kmer_count"
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230 }
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231 }