Mercurial > repos > nml > mykrobe_parser

view test-data/output-report.csv @ 6:8e7e5a660942 draft

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planemo upload for repository https://github.com/phac-nml/mykrobe-parser commit 077a66175f3666924b42f216bbcb671ee0d026f2
author nml
date Fri, 22 Sep 2023 17:24:02 +0000
parents 6eae14751768
children
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"file","Mykrobe_fabG1","Mykrobe_katG","Mykrobe_ahpC","Mykrobe_inhA","Mykrobe_ndh","Isoniazid_R_mutations","Isoniazid_Prediction","Mykrobe_rpoB","Rifampicin_R_mutations","Rifampicin_Prediction","Mykrobe_embB","Mykrobe_embA","Ethambutol_R_mutations","Ethambutol_Prediction","Mykrobe_pncA","Mykrobe_rpsA","Pyrazinamide_R_mutations","Pyrazinamide_Prediction","Mykrobe_Ofloxacin_gyrA","Ofloxacin_R_mutations","Ofloxacin_Prediction","Mykrobe_Moxifloxacin_gyrA","Moxifloxacin_R_mutations","Moxifloxacin_Prediction","Mykrobe_Ciprofloxacin_gyrA","Ciprofloxacin_R_mutations","Ciprofloxacin_Prediction","Mykrobe_rpsL","Mykrobe_Streptomycin_rrs","Mykrobe_Streptomycin_gid","Streptomycin_R_mutations","Streptomycin_Prediction","Mykrobe_Amikacin_rrs","Amikacin_R_mutations","Amikacin_Prediction","Mykrobe_Capreomycin_rrs","Mykrobe_Capreomycin_tlyA","Capreomycin_R_mutations","Capreomycin_Prediction","Mykrobe_Kanamycin_rrs","Mykrobe_Kanamycin_eis","Kanamycin_R_mutations","Kanamycin_Prediction","Lims_Comment","Lims_INTComment","Mykrobe_Workflow_Version","mykrobe_version","Mykrobe_Resistance_probe_set","Mykrobe_min_depth_default_5","Mykrobe_min_conf_default_10","LIMS_file","Mutation_set_version"
"sample","No Mutation","S315N","No Mutation","No Mutation","No Mutation","katG_S315N-S315N:15:0:99999996","R","S450L","rpoB_S450L-S450L:14:0:99999996","R","No Mutation","No Mutation",NA,"S","Q141P","No Mutation","pncA_Q141P-Q141P:14:0:99999996","R","No Mutation",NA,NA,"No Mutation",NA,NA,"No Mutation",NA,NA,"K43R","No Mutation","No Mutation","rpsL_K43R-K43R:24:0:99999995","R","A1401G","rrs_A1401G-A1401G:17:0:99999996","R","A1401G","No Mutation","rrs_A1401G-A1401G:17:0:99999996","R","A1401G","No Mutation","rrs_A1401G-A1401G:17:0:99999996","R","","","","v0.5.6-0-gbd7923a-dirty","tb-walker-probe-set-feb-09-2017.fasta.gz","5","10","",""