Mercurial > repos > nml > mykrobe_parser

view test-data/prediction_2020/output-jsondata.csv @ 6:8e7e5a660942 draft

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planemo upload for repository https://github.com/phac-nml/mykrobe-parser commit 077a66175f3666924b42f216bbcb671ee0d026f2
author nml
date Fri, 22 Sep 2023 17:24:02 +0000
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"file","phylo_group","species","phylo_group_per_covg","species_per_covg","phylo_group_depth","species_depth"
"ERR031480_L6","Mycobacterium_tuberculosis_complex","Mycobacterium_africanum",99.776,89.738,136,167
"ERR125628_MBOV","Mycobacterium_tuberculosis_complex","Mycobacterium_bovis",99.425,65.402,56,48
"ERR181314_L9","Mycobacterium_tuberculosis_complex","Mycobacterium_africanum",99.672,75.016,171,90.5
"ERR234162_L3","Mycobacterium_tuberculosis_complex","Mycobacterium_tuberculosis",99.797,99.33,157,142
"ERR2659153","Mycobacterium_tuberculosis_complex","Mycobacterium_africanum",99.492,64.411,75,79
"ERR266106_MCAN","Mycobacterium_tuberculosis_complex","Mycobacterium_tuberculosis",98.352,73.899,100,92
"ERR2704812_L5","Mycobacterium_tuberculosis_complex","Mycobacterium_africanum",98.467,64.333,332,326
"ERR3335753_L1","Mycobacterium_tuberculosis_complex","Mycobacterium_tuberculosis",99.69,98.335,236,220
"ERR4143897_MPIN","Mycobacterium_tuberculosis_complex","Mycobacterium_microti",99.162,52.314,61,55
"ERR756348_L7","Mycobacterium_tuberculosis_complex","Mycobacterium_tuberculosis",99.033,83.208,173,162
"ERR841495_L5","Mycobacterium_tuberculosis_complex","Mycobacterium_africanum",99.715,57.895,137,123
"SRR17089001","Mycobacterium_tuberculosis_complex","Mycobacterium_africanum",99.448,54.809,240,263
"SRR1710097_L2","Mycobacterium_tuberculosis_complex","Mycobacterium_tuberculosis",99.686,98.909,420,403
"SRR3500411_MMUN","Mycobacterium_tuberculosis_complex","Mycobacterium_africanum",99.568,62.167,114,94
"SRR9157804","Mycobacterium_tuberculosis_complex","Mycobacterium_africanum",99.547,55.332,123,111