Mercurial > repos > nml > neptune
diff neptune.xml @ 1:e2725e0b0113 draft default tip
planemo upload
| author | nml |
|---|---|
| date | Thu, 04 May 2017 16:10:52 -0400 |
| parents | 9121e9f3f285 |
| children |
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--- a/neptune.xml Thu May 04 15:23:54 2017 -0400 +++ b/neptune.xml Thu May 04 16:10:52 2017 -0400 @@ -1,5 +1,5 @@ -<tool id="neptune" name="Neptune: Signature Discovery" version="1.2.5.1"> - <description>Neptune identifies genomic signatures using an exact k-mer matching strategy while accommodating k-mer mismatches.</description> +<tool id="neptune" name="Neptune: Signature Discovery" version="1.2.5.2"> + <description>identifies discriminatory sequences between two groups of sequences</description> <requirements> <requirement type="package" version="1.2.5">neptune</requirement> @@ -63,9 +63,9 @@ </when> <when value="advanced"> <param name="kmer" type="integer" label="k" help="The size of the k-mers. This value is automatically calculated if left blank." optional="true"/> - <param name="size" type="integer" label="Size" help="The minimum size of reported signatures. The default size is 4k." optional="true"/> + <param name="size" type="integer" label="Size" help=" The minimum size of all reported candidate signatures. Identified candidate signatures shorter than this value will be discard. The default size is 4k." optional="true"/> <param name="rate" type="float" label="Rate" help="The probability of a mutation or error at an arbitrary position. The default value is 0.01." optional="true" value="0.01"/> - <param name="exhits" type="integer" label="Minimum Exclusion" help="The minimum number of inclusion targets that must contain a k-mer observed in the reference to begin or continue building candidate signatures. This will be calculated if not specified." optional="true" value="1"/> + <param name="exhits" type="integer" label="Maximum Exclusion" help="The maximum allowable number of exclusion targets that may contain a k-mer observed in the reference before terminating the construction of a candidate signature." optional="true" value="1"/> </when> </conditional> </inputs>