# HG changeset patch
# User nml
# Date 1467904541 14400
# Node ID 1ca9f5fd8b65dd42b59778f670678e2d2b3207ae
# Parent  d71e216751230ad7ba99277f51bcd6e791b5021d
planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_bioext_0_17_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty

diff -r d71e21675123 -r 1ca9f5fd8b65 tool_dependencies.xml
--- a/tool_dependencies.xml	Thu Jul 07 09:57:47 2016 -0400
+++ b/tool_dependencies.xml	Thu Jul 07 11:15:41 2016 -0400
@@ -9,9 +9,15 @@
         <package name="numpy" version="1.10.1">
           <repository changeset_revision="f182da2b1d78" name="package_python_3_4_numpy_1_10_1" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
         </package>
+        <package name="scipy" version="0.16">
+          <repository changeset_revision="aaeb6262be47" name="package_python_3_4_scipy_0_16" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+        </package>
         <package name="biopython" version="1.66">
           <repository changeset_revision="cb43753d0467" name="package_python_3_4_biopython_1_66" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
         </package>
+        <package name="six" version="1.10.0">
+          <repository changeset_revision="93036b19115a" name="package_python_3_4_six_1_10_0" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+        </package>
         <package name="bioext" version="0.17.3">
             <install version="1.0">
                 <actions>
@@ -23,9 +29,15 @@
                         <repository changeset_revision="f182da2b1d78" name="package_python_3_4_numpy_1_10_1" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu">
                             <package name="numpy" version="1.10.1" />
                         </repository>
+                        <repository changeset_revision="aaeb6262be47" name="package_python_3_4_scipy_0_16" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu">
+                            <package name="scipy" version="0.16" />
+                        </repository>
                         <repository changeset_revision="cb43753d0467" name="package_python_3_4_biopython_1_66" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu">
                             <package name="biopython" version="1.66" />
                         </repository>
+                        <repository changeset_revision="93036b19115a" name="package_python_3_4_six_1_10_0" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu">
+                            <package name="six" version="1.10.0" />
+                        </repository>
                         <repository changeset_revision="20ecf5cd3c0e" name="package_python_3_4" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                             <package name="python" version="3.4" />
                         </repository>
@@ -42,8 +54,11 @@
                       <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
                       <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_PYSAM]</environment_variable>
                       <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable>
+                      <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_SCIPY]</environment_variable>
                       <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_BIOPYTHON]</environment_variable>
+                      <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_SIX]</environment_variable>
                       <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable>
+                      <environment_variable action="prepend_to" name="PATH">$ENV[PATH_SCIPY]</environment_variable>
                       <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                       <environment_variable action="set_to" name="PYTHONPATH_BIOEXT">$INSTALL_DIR/lib/python</environment_variable>
                       <environment_variable action="set_to" name="PATH_BIOEXT">$INSTALL_DIR/bin</environment_variable>