Mercurial > repos > nml > package_python_3_4_hivclustering_1_2_3

comparison tool_dependencies.xml @ 2:eda1cbde6572 draft default tip

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planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hivclustering_1_2_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
author nml
date Thu, 07 Jul 2016 13:34:08 -0400
parents 5b977873cc87
children
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1:5b977873cc87 2:eda1cbde6572
4 <repository changeset_revision="20ecf5cd3c0e" name="package_python_3_4" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="20ecf5cd3c0e" name="package_python_3_4" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="bioext" version="0.17.3"> 6 <package name="bioext" version="0.17.3">
7 <repository changeset_revision="1ca9f5fd8b65" name="package_python_3_4_bioext_0_17_3" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> 7 <repository changeset_revision="1ca9f5fd8b65" name="package_python_3_4_bioext_0_17_3" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
8 </package> 8 </package>
9 <package name="hyphy" version="2.2.6"> 9 <package name="fakemp" version="0.9.1">
10 <repository changeset_revision="6e10967fdc7a" name="package_python_3_4_hyphy_2_2_6" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> 10 <repository changeset_revision="13da2754601c" name="package_python_3_4_fakemp_0_9_1" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
11 </package>
12 <package name="hyphy-python" version="0.1.3">
13 <repository changeset_revision="5c14a49141f0" name="package_python_3_4_hyphy_python_0_1_3" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
11 </package> 14 </package>
12 <package name="hppy" version="0.9.6"> 15 <package name="hppy" version="0.9.6">
13 <repository changeset_revision="ded93000c5da" name="package_python_3_4_hppy_0_9_6" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> 16 <repository changeset_revision="46decde5b780" name="package_python_3_4_hppy_0_9_6" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
14 </package> 17 </package>
15 <package name="cython" version="0.23.4"> 18 <package name="cython" version="0.23.4">
16 <repository changeset_revision="c065e365766c" name="package_python_3_4_cython_0_23_4" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> 19 <repository changeset_revision="52c11d398790" name="package_python_3_4_cython_0_23_4" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
17 </package> 20 </package>
18 <package name="hivclustering" version="1.2.3"> 21 <package name="hivclustering" version="1.2.3">
19 <install version="1.0"> 22 <install version="1.0">
20 <actions> 23 <actions>
21 <action type="download_by_url">https://github.com/veg/hivclustering/archive/1.2.3.tar.gz</action> 24 <action type="download_by_url">https://github.com/veg/hivclustering/archive/1.2.3.tar.gz</action>
22 <action type="set_environment_for_install"> 25 <action type="set_environment_for_install">
23 <repository changeset_revision="c065e365766c" name="package_python_3_4_cython_0_23_4" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"> 26 <repository changeset_revision="52c11d398790" name="package_python_3_4_cython_0_23_4" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu">
24 <package name="cython" version="0.23.4" /> 27 <package name="cython" version="0.23.4" />
25 </repository> 28 </repository>
26 <repository changeset_revision="6e10967fdc7a" name="package_python_3_4_hyphy_2_2_6" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"> 29 <repository changeset_revision="5c14a49141f0" name="package_python_3_4_hyphy_python_0_1_3" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu">
27 <package name="hyphy" version="2.2.6" /> 30 <package name="hyphy-python" version="0.1.3" />
28 </repository> 31 </repository>
29 <repository changeset_revision="ded93000c5da" name="package_python_3_4_hppy_0_9_6" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"> 32 <repository changeset_revision="46decde5b780" name="package_python_3_4_hppy_0_9_6" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu">
30 <package name="hppy" version="0.9.6" /> 33 <package name="hppy" version="0.9.6" />
31 </repository> 34 </repository>
32 <repository changeset_revision="1ca9f5fd8b65" name="package_python_3_4_bioext_0_17_3" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"> 35 <repository changeset_revision="1ca9f5fd8b65" name="package_python_3_4_bioext_0_17_3" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu">
33 <package name="bioext" version="0.17.3" /> 36 <package name="bioext" version="0.17.3" />
37 </repository>
38 <repository changeset_revision="13da2754601c" name="package_python_3_4_fakemp_0_9_1" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu">
39 <package name="fakemp" version="0.9.1" />
34 </repository> 40 </repository>
35 <repository changeset_revision="20ecf5cd3c0e" name="package_python_3_4" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> 41 <repository changeset_revision="20ecf5cd3c0e" name="package_python_3_4" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
36 <package name="python" version="3.4" /> 42 <package name="python" version="3.4" />
37 </repository> 43 </repository>
38 </action> 44 </action>
41 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; 47 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
42 python3 setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin 48 python3 setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
43 </action> 49 </action>
44 <action type="set_environment"> 50 <action type="set_environment">
45 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> 51 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
46 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable> 52 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_BIOEXT]</environment_variable>
53 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_FAKEMP]</environment_variable>
54 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_HYPHY_PYTHON]</environment_variable>
55 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_HPPY]</environment_variable>
56 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_CYTHON]</environment_variable>
47 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> 57 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
48 <environment_variable action="set_to" name="PATH_HIVCLUSTERING">$INSTALL_DIR/bin</environment_variable> 58 <environment_variable action="set_to" name="PATH_HIVCLUSTERING">$INSTALL_DIR/bin</environment_variable>
59 <environment_variable action="set_to" name="PYTHONPATH_HIVCLUSTERING">$INSTALL_DIR/lib/python</environment_variable>
49 </action> 60 </action>
50 </actions> 61 </actions>
51 </install> 62 </install>
52 <readme>hivclustering from https://github.com/veg/hivclustering</readme> 63 <readme>hivclustering from https://github.com/veg/hivclustering</readme>
53 </package> 64 </package>