Mercurial > repos > nml > package_python_3_4_hppy_0_9_6

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planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hppy_0_9_6 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
author nml
date Thu, 07 Jul 2016 13:16:47 -0400
parents 1979b0ff1d00
children 46decde5b780
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<?xml version="1.0"?>
<tool_dependency>
    <package name="python" version="3.4">
        <repository changeset_revision="20ecf5cd3c0e" name="package_python_3_4" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="cython" version="0.23.4">
        <repository changeset_revision="52c11d398790" name="package_python_3_4_cython_0_23_4" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="hyphy-python" version="0.1.3">
        <repository changeset_revision="86947a99997b" name="package_python_3_4_hyphy_python_0_1_3" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="fakemp" version="0.9.1">
        <repository changeset_revision="13da2754601c" name="package_python_3_4_fakemp_0_9_1" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="hppy" version="0.9.6">
        <install version="1.0">
            <actions>
                <action type="download_by_url">https://github.com/veg/hppy/archive/0.9.6.tar.gz</action>
                <action type="set_environment_for_install">
                    <repository changeset_revision="86947a99997b" name="package_python_3_4_hyphy_python_0_1_3" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu">
                        <package name="hyphy-python" version="0.1.3" />
                    </repository>
                    <repository changeset_revision="20ecf5cd3c0e" name="package_python_3_4" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                        <package name="python" version="3.4" />
                    </repository>
                    <repository changeset_revision="52c11d398790" name="package_python_3_4_cython_0_23_4" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu">
                        <package name="cython" version="0.23.4" />
                    </repository>
                    <repository changeset_revision="13da2754601c" name="package_python_3_4_fakemp_0_9_1" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu">
                        <package name="fakemp" version="0.9.1" />
                    </repository>
                </action>
                <action type="make_directory">$INSTALL_DIR/lib/python</action>
                <action type="shell_command">
                    export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
                    echo $PYTHONPATH &amp;&amp;
                    python3 setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
                </action>
                <action type="set_environment">
                    <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
                    <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_HYPHY_PYTHON]</environment_variable>
                    <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_CYTHON]</environment_variable>
                    <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_FAKEMP]</environment_variable>
                    <environment_variable action="append_to" name="PYTHONPATH_HPPY">$INSTALL_DIR/lib/python</environment_variable>
                </action>
            </actions>
        </install>
        <readme>hppy from https://github.com/veg/hppy</readme>
    </package>
</tool_dependency>