Mercurial > repos > nml > package_python_3_4_hyphy_python_0_1_3

comparison tool_dependencies.xml @ 1:5c14a49141f0 draft default tip

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planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_python_0_1_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
author nml
date Thu, 07 Jul 2016 13:19:06 -0400
parents 86947a99997b
children
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0:86947a99997b 1:5c14a49141f0
19 <action type="shell_command"> 19 <action type="shell_command">
20 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; 20 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
21 python3 setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin 21 python3 setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
22 </action> 22 </action>
23 <action type="set_environment"> 23 <action type="set_environment">
24 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/pyhton</environment_variable> 24 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
25 <environment_variable action="append_to" name="PATH">$INSTALL_DIR/bin</environment_variable> 25 <environment_variable action="append_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
26 <environment_variable action="set_to" name="PYTHONPATH_HYPHY_PYTHON">$INSTALL_DIR/lib/python</environment_variable> 26 <environment_variable action="set_to" name="PYTHONPATH_HYPHY_PYTHON">$INSTALL_DIR/lib/python</environment_variable>
27 <environment_variable action="set_to" name="PATH_HYPHY_PYTHON">$INSTALL_DIR/bin</environment_variable> 27 <environment_variable action="set_to" name="PATH_HYPHY_PYTHON">$INSTALL_DIR/bin</environment_variable>
28 <environment_variable action="set_to" name="HYPHY_PYTHON_ROOT_DIR">$INSTALL_DIR</environment_variable> 28 <environment_variable action="set_to" name="HYPHY_PYTHON_ROOT_DIR">$INSTALL_DIR</environment_variable>
29 </action> 29 </action>