Mercurial > repos > nml > package_python_3_4_pysam_0_8_3
comparison tool_dependencies.xml @ 0:085a17b297b1 draft default tip
planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_pysam_0_8_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa
author | nml |
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date | Thu, 07 Jul 2016 09:56:33 -0400 |
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1 <?xml version="1.0"?> | |
2 <tool_dependency> | |
3 <package name="python" version="3.4"> | |
4 <repository changeset_revision="20ecf5cd3c0e" name="package_python_3_4" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
5 </package> | |
6 <package name="pysam" version="0.8.3"> | |
7 <install version="1.0"> | |
8 <actions> | |
9 <action type="download_by_url">https://depot.galaxyproject.org/software/pysam/pysam_0.8.3_src_all.tar.gz</action> | |
10 <action type="set_environment_for_install"> | |
11 <repository changeset_revision="20ecf5cd3c0e" name="package_python_3_4" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> | |
12 <package name="python" version="3.4" /> | |
13 </repository> | |
14 </action> | |
15 <action type="make_directory">$INSTALL_DIR/lib/python</action> | |
16 <action type="shell_command"> | |
17 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && | |
18 python3 setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin | |
19 </action> | |
20 <action type="set_environment"> | |
21 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> | |
22 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> | |
23 <environment_variable action="set_to" name="PYTHONPATH_PYSAM">$INSTALL_DIR/lib/python</environment_variable> | |
24 <environment_variable action="set_to" name="PATH_PYSAM">$INSTALL_DIR/bin</environment_variable> | |
25 <environment_variable action="set_to" name="PYSAM_ROOT_DIR">$INSTALL_DIR</environment_variable> | |
26 </action> | |
27 </actions> | |
28 </install> | |
29 <readme> | |
30 Installation of pysam, pyrex and python are required. The installation can be accessed via PYSAM_PATH. | |
31 </readme> | |
32 </package> | |
33 </tool_dependency> |