Mercurial > repos > nml > package_spades_3_6_2
changeset 0:af7dfb1c3f42 draft default tip
planemo upload commit 974c87cef4acb94dad4ea0867b2e831fcc4231d6-dirty
| author | nml |
|---|---|
| date | Fri, 20 Nov 2015 09:58:23 -0500 |
| parents | |
| children | |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 34 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Fri Nov 20 09:58:23 2015 -0500 @@ -0,0 +1,34 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="spades" version="3.6.2"> + <install version="1.0"> + <actions> + <action type="download_by_url">http://spades.bioinf.spbau.ru/release3.6.2/SPAdes-3.6.2-Linux.tar.gz</action> + <!-- Copying the whole bin folder --> + <action type="make_directory">$INSTALL_DIR/bin</action> + <action type="make_directory">$INSTALL_DIR/share</action> + <action type="move_directory_files"> + <source_directory>bin</source_directory> + <destination_directory>$INSTALL_DIR/bin</destination_directory> + </action> + <action type="move_directory_files"> + <source_directory>share</source_directory> + <destination_directory>$INSTALL_DIR/share</destination_directory> + </action> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> + </action> + </actions> + </install> + <readme> +This installs SPAdes 3.6.2. + +See manual here http://spades.bioinf.spbau.ru/release3.6.2/manual.html +See also here http://bioinf.spbau.ru/en/spades + +Author : Philip Mabon +Original author : Lionel Guy + </readme> + </package> +</tool_dependency> +