Mercurial > repos > nml > package_spades_3_8_0
changeset 0:c9eab59c0bc2 draft default tip
planemo upload commit 733f396b6a4397c3b133bcb6fb3c10f5970db230-dirty
| author | nml |
|---|---|
| date | Tue, 31 May 2016 15:27:29 -0400 |
| parents | |
| children | |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 34 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Tue May 31 15:27:29 2016 -0400 @@ -0,0 +1,34 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="spades" version="3.8.0"> + <install version="1.0"> + <actions> + <action type="download_by_url">http://spades.bioinf.spbau.ru/release3.8.0/SPAdes-3.8.0-Linux.tar.gz</action> + <!-- Copying the whole bin folder --> + <action type="make_directory">$INSTALL_DIR/bin</action> + <action type="make_directory">$INSTALL_DIR/share</action> + <action type="move_directory_files"> + <source_directory>bin</source_directory> + <destination_directory>$INSTALL_DIR/bin</destination_directory> + </action> + <action type="move_directory_files"> + <source_directory>share</source_directory> + <destination_directory>$INSTALL_DIR/share</destination_directory> + </action> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> + </action> + </actions> + </install> + <readme> +This installs SPAdes 3.8. + +See manual here http://spades.bioinf.spbau.ru/release3.8.0/manual.html +See also here http://bioinf.spbau.ru/en/spades + +Author : Philip Mabon +Original author : Lionel Guy + </readme> + </package> +</tool_dependency> +