# HG changeset patch
# User nml
# Date 1486402171 18000
# Node ID 79a05e50038119721be041a96898317b4ddfe281

Uploaded

diff -r 000000000000 -r 79a05e500381 tool_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Feb 06 12:29:31 2017 -0500
@@ -0,0 +1,56 @@
+<?xml version="1.0"?>
+<tool_dependency>
+	<package name="python" version="2.7.10">
+		<repository changeset_revision="bd7165ea6526" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="atlas" version="3.10.2">
+    	<repository changeset_revision="98c017ec230d" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="numpy" version="1.9">
+		<repository changeset_revision="f24fc0b630fc" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="scipy" version="0.14">
+		<repository changeset_revision="7fddd308117d" name="package_python_2_7_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="srst2" version="0.1.4.6">
+	    <install version="1.0">
+	         <actions_group>
+	            <actions>
+	                <action sha256sum="24cbd03933d4cc14bbfa7f8a073c9b0caafb13d55afb3bfa25f8b093fc5bc615" type="download_by_url">https://github.com/katholt/srst2/archive/v0.1.6.tar.gz</action>
+					<action type="shell_command">cp ./scripts/getmlst.py $INSTALL_DIR</action>
+					<action type="shell_command">cp ./scripts/srst2.py $INSTALL_DIR</action>
+                    <action type="chmod"><file mode="777">$INSTALL_DIR/getmlst.py</file></action>
+					<action type="chmod"><file mode="777">$INSTALL_DIR/srst2.py</file></action>
+					<action type="set_environment_for_install">
+                        <repository changeset_revision="bd7165ea6526" name="package_python_2_7_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                    		<package name="python" version="2.7.10" />
+            			</repository>
+            			<repository changeset_revision="98c017ec230d" name="package_atlas_3_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+		                    <package name="atlas" version="3.10.2" />
+		                </repository>
+						<repository changeset_revision="f24fc0b630fc" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+		                    <package name="numpy" version="1.9" />
+		                </repository>
+		                <repository changeset_revision="7fddd308117d" name="package_python_2_7_scipy_0_14" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+		                    <package name="scipy" version="0.14" />
+		                </repository>
+
+                 	</action>
+                    <action type="set_environment">
+                    	<environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
+ 		                <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
+		                <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable>
+		                <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]/lib/python</environment_variable>
+		                <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_SCIPY]</environment_variable>
+		                <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_SCIPY]/lib/python</environment_variable>
+	                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
+	                    <environment_variable action="prepend_to" name="PATH">$ENV[PYTHONHOME]/bin</environment_variable>
+	                    <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[PYTHONHOME]/lib</environment_variable>
+	                    <environment_variable action="set_to" name="BASE">$INSTALL_DIR</environment_variable>
+	                    <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]</environment_variable>
+                    </action>
+	            </actions>
+	       	</actions_group>
+	    </install>
+	</package>
+</tool_dependency>