Mercurial > repos > nml > pangolin
annotate test-data/lineage_report.tsv @ 1:b91b3923656e draft
"planemo upload for repository https://github.com/hCoV-2019/pangolin commit 216d09e3d63a6ab4245df78c111ca97d4e0b14de"
| author | nml |
|---|---|
| date | Fri, 01 May 2020 15:33:17 -0400 |
| parents | |
| children | 24c005390360 |
| rev | line source |
|---|---|
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1
b91b3923656e
"planemo upload for repository https://github.com/hCoV-2019/pangolin commit 216d09e3d63a6ab4245df78c111ca97d4e0b14de"
nml
parents:
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1 taxon lineage SH-alrt UFbootstrap lineages_version status note |
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b91b3923656e
"planemo upload for repository https://github.com/hCoV-2019/pangolin commit 216d09e3d63a6ab4245df78c111ca97d4e0b14de"
nml
parents:
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changeset
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2 Japan/DP0779/2020|EPI_ISL_416626||Japan|unknown||2020-02-17 B 100 100 2020-04-27 passed_qc |
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b91b3923656e
"planemo upload for repository https://github.com/hCoV-2019/pangolin commit 216d09e3d63a6ab4245df78c111ca97d4e0b14de"
nml
parents:
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changeset
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3 USA/NY-NYUMC7/2020|EPI_ISL_418192||USA|New_York|Manhattan|2020-03-16 B.1 100 100 2020-04-27 passed_qc |
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b91b3923656e
"planemo upload for repository https://github.com/hCoV-2019/pangolin commit 216d09e3d63a6ab4245df78c111ca97d4e0b14de"
nml
parents:
diff
changeset
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4 This_seq_has_no_seq None 0 0 2020-04-27 fail seq_len:0 |
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b91b3923656e
"planemo upload for repository https://github.com/hCoV-2019/pangolin commit 216d09e3d63a6ab4245df78c111ca97d4e0b14de"
nml
parents:
diff
changeset
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5 This_seq_is_too_short None 0 0 2020-04-27 fail seq_len:2997 |
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b91b3923656e
"planemo upload for repository https://github.com/hCoV-2019/pangolin commit 216d09e3d63a6ab4245df78c111ca97d4e0b14de"
nml
parents:
diff
changeset
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6 This_seq_has_lots_of_Ns None 0 0 2020-04-27 fail N_content:0.98 |
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b91b3923656e
"planemo upload for repository https://github.com/hCoV-2019/pangolin commit 216d09e3d63a6ab4245df78c111ca97d4e0b14de"
nml
parents:
diff
changeset
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7 This_seq_is_literally_just_N None 0 0 2020-04-27 fail N_content:1.0 |