Mercurial > repos > nml > pangolin
diff pangolin.xml @ 3:24c005390360 draft
"planemo upload for repository https://github.com/hCoV-2019/pangolin commit 8a1337fc6ef2b8b3f2f82ebdf3ee8dbb6e3ff1ed"
| author | nml |
|---|---|
| date | Mon, 11 May 2020 19:23:31 -0400 |
| parents | c897e502c084 |
| children | 35566aadcfc7 |
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--- a/pangolin.xml Mon May 04 16:40:54 2020 -0400 +++ b/pangolin.xml Mon May 11 19:23:31 2020 -0400 @@ -41,14 +41,28 @@ <tests> <test> <param name="input1" value="test_seqs.fasta" /> - <output name="lineage_report" value="lineage_report.tsv" /> + <output name="lineage_report" > + <assert_contents> + <has_text text="Japan/DP0779/2020|EPI_ISL_416626||Japan|unknown||2020-02-17" /> + <has_text text="USA/NY-NYUMC7/2020|EPI_ISL_418192||USA|New_York|Manhattan|2020-03-16" /> + <has_text text="This_seq_is_too_short" /> + <has_text text="lineage" /> + </assert_contents> + </output> </test> <test> <param name="input1" value="test_seqs.fasta" /> <section name="additional"> <param name="write_tree" value="true" /> </section> - <output name="lineage_report" value="lineage_report.tsv" /> + <output name="lineage_report" > + <assert_contents> + <has_text text="Japan/DP0779/2020|EPI_ISL_416626||Japan|unknown||2020-02-17" /> + <has_text text="USA/NY-NYUMC7/2020|EPI_ISL_418192||USA|New_York|Manhattan|2020-03-16" /> + <has_text text="This_seq_is_too_short" /> + <has_text text="lineage" /> + </assert_contents> + </output> <output_collection name="pangolin_trees" type="list"> <element name="USA_NY-NYUMC7_2020_EPI_ISL_418192__USA_New_York_Manhattan_2020-03-16" ftype="iqtree"> <assert_contents>