Mercurial > repos > nml > pangolin

diff test-data/lineage_report.tsv @ 1:b91b3923656e draft

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"planemo upload for repository https://github.com/hCoV-2019/pangolin commit 216d09e3d63a6ab4245df78c111ca97d4e0b14de"
author nml
date Fri, 01 May 2020 15:33:17 -0400
parents
children 24c005390360
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/lineage_report.tsv	Fri May 01 15:33:17 2020 -0400
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+taxon	lineage	SH-alrt	UFbootstrap	lineages_version	status	note
+Japan/DP0779/2020|EPI_ISL_416626||Japan|unknown||2020-02-17	B	100	100	2020-04-27	passed_qc	
+USA/NY-NYUMC7/2020|EPI_ISL_418192||USA|New_York|Manhattan|2020-03-16	B.1	100	100	2020-04-27	passed_qc	
+This_seq_has_no_seq	None	0	0	2020-04-27	fail	seq_len:0
+This_seq_is_too_short	None	0	0	2020-04-27	fail	seq_len:2997
+This_seq_has_lots_of_Ns	None	0	0	2020-04-27	fail	N_content:0.98
+This_seq_is_literally_just_N	None	0	0	2020-04-27	fail	N_content:1.0