comparison plasmidSPAdes.xml @ 1:a415d510332b draft default tip

Changing version
author nml
date Mon, 07 Nov 2016 16:31:18 -0500
parents 27b90e43e2d8
children
comparison
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0:27b90e43e2d8 1:a415d510332b
1 <tool id="plasmidspades" name="plasmidspades" version="1.0"> 1 <tool id="plasmidspades" name="plasmidspades" version="1.1">
2 <description>genome assembler for plasmids</description> 2 <description>genome assembler for plasmids</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="3.8.0">spades</requirement> 4 <requirement type="package" version="3.9.0">spades</requirement>
5 </requirements> 5 </requirements>
6 <command interpreter="perl">spades.pl 6 <command interpreter="perl">spades.pl
7 $out_contigs 7 $out_contigs
8 $out_contig_stats 8 $out_contig_stats
9 $out_scaffolds 9 $out_scaffolds
215 <help> 215 <help>
216 **What it does** 216 **What it does**
217 217
218 SPAdes – St. Petersburg genome assembler – is intended for both standard isolates and single-cell MDA bacteria assemblies. See http://bioinf.spbau.ru/en/spades for more details on SPAdes. 218 SPAdes – St. Petersburg genome assembler – is intended for both standard isolates and single-cell MDA bacteria assemblies. See http://bioinf.spbau.ru/en/spades for more details on SPAdes.
219 219
220 This wrapper runs SPAdes 3.8, collects the output, and throws away all the temporary files. It also produces a tab file with contig names, length and coverage. 220 This wrapper runs SPAdes 3.9, collects the output, and throws away all the temporary files. It also produces a tab file with contig names, length and coverage.
221 221
222 **License** 222 **License**
223 223
224 SPAdes is developed by and copyrighted to Saint-Petersburg Academic University, and is released under GPLv2. 224 SPAdes is developed by and copyrighted to Saint-Petersburg Academic University, and is released under GPLv2.
225 225