Mercurial > repos > nml > positions2snv_alignment
comparison positions2snv_alignment.xml @ 1:1cf81ca17e9d draft default tip
"planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 57067916cb7b9c5b65c1da59d4bbb846c3e3af2f"
| author | nml |
|---|---|
| date | Tue, 23 Jun 2020 10:26:59 -0400 |
| parents | e2cec726fa79 |
| children |
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| 0:e2cec726fa79 | 1:1cf81ca17e9d |
|---|---|
| 1 <tool id="positions2snv_alignment" name="Positions to SNV alignment" version ="1.8.2"> | 1 <tool id="positions2snv_alignment" name="Positions to SNV alignment" version ="@VERSION@+galaxy1"> |
| 2 <description>Create a SNV-only alignment from the SNVPhyl positions table.</description> | 2 <description>Create a SNV-only alignment from the SNVPhyl positions table.</description> |
| 3 <requirements> | 3 <macros> |
| 4 <requirement type="package" version="1.8.2">snvphyl-tools</requirement> | 4 <import>macros.xml</import> |
| 5 </requirements> | 5 </macros> |
| 6 <expand macro="requirements"/> | |
| 6 <command detect_errors="exit_code"><![CDATA[ | 7 <command detect_errors="exit_code"><![CDATA[ |
| 7 positions2snv_alignment.pl -i $snv_table -o $output -f $out_format $keep_all | 8 positions2snv_alignment.pl -i $snv_table -o $output -f $out_format $keep_all |
| 8 #if $reference_name: | 9 #if $reference_name: |
| 9 --reference-name $reference_name | 10 --reference-name $reference_name |
| 10 #end if | 11 #end if |
| 68 ============ | 69 ============ |
| 69 | 70 |
| 70 Creates a SNV-only alignment from the SNVPhyl SNV positions table. | 71 Creates a SNV-only alignment from the SNVPhyl SNV positions table. |
| 71 | 72 |
| 72 </help> | 73 </help> |
| 73 | 74 <expand macro="citations"/> |
| 74 <citations> | |
| 75 </citations> | |
| 76 </tool> | 75 </tool> |