comparison positions2snv_invariant_alignment.xml @ 1:5dc704146cc6 draft default tip

"planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 57067916cb7b9c5b65c1da59d4bbb846c3e3af2f"

0:bf542eece94a

<tool id="positions2snv_invariant_alignment" name="Positions to SNV invariant alignment" version ="1.8.2">
  <description>Create a SNV and non-variant alignment from the SNVPhyl positions table and a reference genome.</description>
  <requirements>
    <requirement type="package" version="1.8.2">snvphyl-tools</requirement>
  </requirements>
  <command detect_errors="exit_code"><![CDATA[
	positions2snv_invariant_alignment.pl -i $snv_table --reference-file $reference_genome -o outputs -f $out_format $keep_all $merge_alignment
  ]]></command>
  <inputs>
    <param name="snv_table" type="data" label="SNV table" format="tabular"/>

============

Creates a SNV and non-variant alignment from the SNVPhyl SNV positions table and a reference genome.

  </help>

  <citations>
  </citations>
</tool>

1:5dc704146cc6

<tool id="positions2snv_invariant_alignment" name="Positions to SNV invariant alignment" version ="@VERSION@+galaxy1">
  <description>Create a SNV and non-variant alignment from the SNVPhyl positions table and a reference genome.</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="requirements"/>
  <command detect_errors="exit_code"><![CDATA[
	positions2snv_invariant_alignment.pl -i $snv_table --reference-file $reference_genome -o outputs -f $out_format $keep_all $merge_alignment
  ]]></command>
  <inputs>
    <param name="snv_table" type="data" label="SNV table" format="tabular"/>

============

Creates a SNV and non-variant alignment from the SNVPhyl SNV positions table and a reference genome.

  </help>
  <expand macro="citations"/>
</tool>