Mercurial > repos > nml > positions2snv_invariant_alignment
changeset 1:5dc704146cc6 draft default tip
"planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 57067916cb7b9c5b65c1da59d4bbb846c3e3af2f"
| author | nml |
|---|---|
| date | Tue, 23 Jun 2020 10:27:17 -0400 |
| parents | bf542eece94a |
| children | |
| files | macros.xml positions2snv_invariant_alignment.xml |
| diffstat | 2 files changed, 22 insertions(+), 7 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Tue Jun 23 10:27:17 2020 -0400 @@ -0,0 +1,16 @@ +<macros> + <token name="@VERSION@">1.8.2</token> + + <xml name="requirements"> + <requirements> + <requirement type="package" version="@VERSION@">snvphyl-tools</requirement> + <yield/> + </requirements> + </xml> + <xml name="citations"> + <citations> + <citation type="doi">10.1099/mgen.0.000116</citation> + <yield/> + </citations> + </xml> +</macros>
--- a/positions2snv_invariant_alignment.xml Tue Aug 27 12:32:37 2019 -0400 +++ b/positions2snv_invariant_alignment.xml Tue Jun 23 10:27:17 2020 -0400 @@ -1,8 +1,9 @@ -<tool id="positions2snv_invariant_alignment" name="Positions to SNV invariant alignment" version ="1.8.2"> +<tool id="positions2snv_invariant_alignment" name="Positions to SNV invariant alignment" version ="@VERSION@+galaxy1"> <description>Create a SNV and non-variant alignment from the SNVPhyl positions table and a reference genome.</description> - <requirements> - <requirement type="package" version="1.8.2">snvphyl-tools</requirement> - </requirements> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements"/> <command detect_errors="exit_code"><![CDATA[ positions2snv_invariant_alignment.pl -i $snv_table --reference-file $reference_genome -o outputs -f $out_format $keep_all $merge_alignment ]]></command> @@ -85,7 +86,5 @@ Creates a SNV and non-variant alignment from the SNVPhyl SNV positions table and a reference genome. </help> - - <citations> - </citations> + <expand macro="citations"/> </tool>