annotate test-data/mutant_types.csv @ 4:8cdffc02d2e2 draft

planemo upload for repository https://github.com/phac-nml/quasitools commit 19e0f266ee455b82432e2d7b987b35de8c7a14d5

#gene,nt position (gene),nt start position,nt end position,ref codon,mutant codon,ref AA,mutant AA,coverage,mutant frequency,mutant type,NS count,S count
IN,3246-4112,3384,3386,gga,ggG,G,G,2647,0.08,S,0.0000,1.0000
IN,3246-4112,3387,3389,gaa,Aaa,E,K,2646,0.30,NS,1.0000,0.0000
IN,3246-4112,3450,3452,gaa,Aaa,E,K,2455,0.08,NS,1.0000,0.0000
IN,3246-4112,3450,3452,gaa,AGa,E,R,2455,0.81,NS,2.0000,0.0000
IN,3246-4112,3450,3452,gaa,gGa,E,G,2455,0.08,NS,1.0000,0.0000
IN,3246-4112,3453,3455,gga,Aga,G,R,2422,0.21,NS,1.0000,0.0000
IN,3246-4112,3453,3455,gga,AgG,G,R,2422,0.74,NS,1.5000,0.5000
IN,3246-4112,3453,3455,gga,gAa,G,E,2422,1.03,NS,1.0000,0.0000
IN,3246-4112,3453,3455,gga,ggG,G,G,2422,0.21,S,0.0000,1.0000
IN,3246-4112,3456,3458,aaa,aaG,K,K,2411,0.91,S,0.0000,1.0000
IN,3246-4112,3459,3461,gtt,Ttt,V,F,2406,0.33,NS,1.0000,0.0000
IN,3246-4112,3462,3464,atc,Ttc,I,F,2408,0.17,NS,1.0000,0.0000
IN,3246-4112,3504,3506,gaa,Aaa,E,K,2319,0.39,NS,1.0000,0.0000
IN,3246-4112,3507,3509,gtt,gGt,V,G,2297,0.09,NS,1.0000,0.0000
IN,3246-4112,3510,3512,att,Ttt,I,F,2281,0.44,NS,1.0000,0.0000
IN,3246-4112,3519,3521,gaa,Aaa,E,K,2140,0.51,NS,1.0000,0.0000
IN,3246-4112,3519,3521,gaa,AGa,E,R,2140,0.56,NS,2.0000,0.0000
IN,3246-4112,3519,3521,gaa,gGa,E,G,2140,0.33,NS,1.0000,0.0000
IN,3246-4112,3522,3524,aca,aAa,T,K,2093,0.10,NS,1.0000,0.0000
IN,3246-4112,3531,3533,gaa,Aaa,E,K,1959,1.48,NS,1.0000,0.0000
IN,3246-4112,3531,3533,gaa,gGa,E,G,1959,1.63,NS,1.0000,0.0000
IN,3246-4112,3546,3548,ctt,Ttt,L,F,530,0.94,NS,1.0000,0.0000
RT,1566-2885,1872,1874,aaa,aaC,K,N,154,7.79,NS,1.0000,0.0000
RT,1566-2885,2823,2825,cct,ccC,P,P,1362,0.37,S,0.0000,1.0000