annotate test-data/nt_variants.vcf @ 6:9fb9fed71486 draft

planemo upload for repository https://github.com/phac-nml/quasitools commit 59e7cd4a6042f14a07488489a1dc3b05ee3bc15c

##fileformat=VCFv4.2
##fileDate=20170330
##source=HyDRA
##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele Count">
##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency">
##FILTER=<ID=q30,Description="Quality below 30">
##FILTER=<ID=dp100,Description="Read depth below 100">
##FILTER=<ID=ac5,Description="Allele count below 5">
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hxb2_pol	297	.	t	c	2.000000000000000000000000	q30;ac5	DP=392;AC=1;AF=0.0026
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hxb2_pol	311	.	t	a	2.000000000000000000000000	q30;ac5	DP=405;AC=1;AF=0.0025
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hxb2_pol	325	.	g	a	2.000000000000000000000000	q30;ac5	DP=420;AC=1;AF=0.0024
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hxb2_pol	327	.	a	t	2.000000000000000000000000	q30;ac5	DP=401;AC=1;AF=0.0025
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hxb2_pol	336	.	g	a	2.000000000000000000000000	q30;ac5	DP=434;AC=1;AF=0.0023
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hxb2_pol	340	.	g	a	2.000000000000000000000000	q30;ac5	DP=436;AC=1;AF=0.0023
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hxb2_pol	344	.	t	a	2.000000000000000000000000	q30;ac5	DP=443;AC=1;AF=0.0023
hxb2_pol	345	.	g	t	2.000000000000000000000000	q30;ac5	DP=443;AC=1;AF=0.0023
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hxb2_pol	358	.	g	a	6.000000000000000000000000	q30;ac5	DP=446;AC=2;AF=0.0045
hxb2_pol	359	.	t	g	6.000000000000000000000000	q30;ac5	DP=446;AC=2;AF=0.0045
hxb2_pol	361	.	a	t	6.000000000000000000000000	q30;ac5	DP=445;AC=2;AF=0.0045
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hxb2_pol	372	.	a	t	2.000000000000000000000000	q30;ac5	DP=463;AC=1;AF=0.0022
hxb2_pol	388	.	a	t	3.000000000000000000000000	q30;ac5	DP=270;AC=1;AF=0.0037
hxb2_pol	389	.	t	a	9.000000000000000000000000	q30;ac5	DP=271;AC=2;AF=0.0074
hxb2_pol	390	.	a	t	3.000000000000000000000000	q30;ac5	DP=273;AC=1;AF=0.0037
hxb2_pol	393	.	a	g	3.000000000000000000000000	q30;ac5	DP=277;AC=1;AF=0.0036
hxb2_pol	394	.	g	c	3.000000000000000000000000	q30;ac5	DP=278;AC=1;AF=0.0036
hxb2_pol	407	.	t	a	3.000000000000000000000000	q30;ac5	DP=296;AC=1;AF=0.0034
hxb2_pol	425	.	a	g	2.000000000000000000000000	q30;ac5	DP=343;AC=1;AF=0.0029
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hxb2_pol	427	.	g	a	2.000000000000000000000000	q30;ac5	DP=342;AC=1;AF=0.0029
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hxb2_pol	429	.	a	g	2.000000000000000000000000	q30;ac5	DP=343;AC=1;AF=0.0029
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hxb2_pol	432	.	g	a	2.000000000000000000000000	q30;ac5	DP=337;AC=1;AF=0.0030
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hxb2_pol	439	.	t	c	22.00000000000000000000000	q30;ac5	DP=329;AC=4;AF=0.0122
hxb2_pol	440	.	c	a	31.00000000000000000000000	PASS	DP=327;AC=5;AF=0.0153
hxb2_pol	440	.	c	t	22.00000000000000000000000	q30;ac5	DP=327;AC=4;AF=0.0122
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hxb2_pol	445	.	a	t	3.000000000000000000000000	q30;ac5	DP=323;AC=1;AF=0.0031
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hxb2_pol	453	.	t	g	3.000000000000000000000000	q30;ac5	DP=331;AC=1;AF=0.0030
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hxb2_pol	544	.	a	g	2.000000000000000000000000	q30;ac5	DP=366;AC=1;AF=0.0027
hxb2_pol	545	.	g	a	2.000000000000000000000000	q30;ac5	DP=366;AC=1;AF=0.0027
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hxb2_pol	592	.	g	a	2.000000000000000000000000	q30;ac5	DP=399;AC=1;AF=0.0025
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hxb2_pol	604	.	a	g	24.00000000000000000000000	q30;ac5	DP=148;AC=3;AF=0.0203
hxb2_pol	606	.	a	c	100.0000000000000000000000	PASS	DP=157;AC=12;AF=0.0764
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hxb2_pol	641	.	a	t	3.000000000000000000000000	q30;ac5	DP=287;AC=1;AF=0.0035
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hxb2_pol	665	.	a	g	7.000000000000000000000000	q30;ac5	DP=384;AC=2;AF=0.0052
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hxb2_pol	666	.	c	t	2.000000000000000000000000	q30;ac5	DP=388;AC=1;AF=0.0026
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hxb2_pol	687	.	t	a	2.000000000000000000000000	q30;ac5	DP=436;AC=1;AF=0.0023
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hxb2_pol	691	.	a	t	6.000000000000000000000000	q30;ac5	DP=440;AC=2;AF=0.0045
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hxb2_pol	693	.	a	c	2.000000000000000000000000	q30;ac5	DP=446;AC=1;AF=0.0022
hxb2_pol	693	.	a	t	2.000000000000000000000000	q30;ac5	DP=446;AC=1;AF=0.0022
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hxb2_pol	695	.	c	t	2.000000000000000000000000	q30;ac5	DP=457;AC=1;AF=0.0022
hxb2_pol	696	.	t	c	2.000000000000000000000000	q30;ac5	DP=457;AC=1;AF=0.0022
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hxb2_pol	698	.	g	a	11.00000000000000000000000	q30;ac5	DP=459;AC=3;AF=0.0065
hxb2_pol	699	.	t	g	11.00000000000000000000000	q30;ac5	DP=460;AC=3;AF=0.0065
hxb2_pol	700	.	a	t	11.00000000000000000000000	q30;ac5	DP=464;AC=3;AF=0.0065
hxb2_pol	701	.	t	a	24.00000000000000000000000	q30	DP=465;AC=5;AF=0.0108
hxb2_pol	702	.	a	t	17.00000000000000000000000	q30;ac5	DP=461;AC=4;AF=0.0087
hxb2_pol	704	.	a	c	1.000000000000000000000000	q30;ac5	DP=475;AC=1;AF=0.0021
hxb2_pol	705	.	c	a	10.00000000000000000000000	q30;ac5	DP=476;AC=3;AF=0.0063
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hxb2_pol	707	.	a	t	5.000000000000000000000000	q30;ac5	DP=480;AC=2;AF=0.0042
hxb2_pol	708	.	t	g	5.000000000000000000000000	q30;ac5	DP=482;AC=2;AF=0.0041
hxb2_pol	710	.	a	g	1.000000000000000000000000	q30;ac5	DP=486;AC=1;AF=0.0021
hxb2_pol	711	.	g	a	1.000000000000000000000000	q30;ac5	DP=487;AC=1;AF=0.0021
hxb2_pol	712	.	a	c	5.000000000000000000000000	q30;ac5	DP=489;AC=2;AF=0.0041
hxb2_pol	713	.	c	a	5.000000000000000000000000	q30;ac5	DP=488;AC=2;AF=0.0041
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hxb2_pol	716	.	c	a	16.00000000000000000000000	q30;ac5	DP=494;AC=4;AF=0.0081
hxb2_pol	717	.	a	g	16.00000000000000000000000	q30;ac5	DP=497;AC=4;AF=0.0080
hxb2_pol	720	.	g	a	10.00000000000000000000000	q30;ac5	DP=504;AC=3;AF=0.0060
hxb2_pol	721	.	a	t	5.000000000000000000000000	q30;ac5	DP=504;AC=2;AF=0.0040
hxb2_pol	722	.	t	a	1.000000000000000000000000	q30;ac5	DP=504;AC=1;AF=0.0020
hxb2_pol	723	.	t	a	1.000000000000000000000000	q30;ac5	DP=509;AC=1;AF=0.0020
hxb2_pol	724	.	a	g	1.000000000000000000000000	q30;ac5	DP=508;AC=1;AF=0.0020
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hxb2_pol	726	.	a	t	1.000000000000000000000000	q30;ac5	DP=514;AC=1;AF=0.0019
hxb2_pol	744	.	t	c	5.000000000000000000000000	q30;ac5	DP=540;AC=2;AF=0.0037
hxb2_pol	745	.	c	a	1.000000000000000000000000	q30;ac5	DP=535;AC=1;AF=0.0019
hxb2_pol	745	.	c	t	5.000000000000000000000000	q30;ac5	DP=535;AC=2;AF=0.0037
hxb2_pol	746	.	c	a	4.000000000000000000000000	q30;ac5	DP=545;AC=2;AF=0.0037
hxb2_pol	747	.	a	c	29.00000000000000000000000	q30	DP=544;AC=6;AF=0.0110
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hxb2_pol	749	.	a	g	4.000000000000000000000000	q30;ac5	DP=547;AC=2;AF=0.0037
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hxb2_pol	753	.	a	t	9.000000000000000000000000	q30;ac5	DP=551;AC=3;AF=0.0054
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hxb2_pol	811	.	a	g	19.00000000000000000000000	q30	DP=634;AC=5;AF=0.0079
hxb2_pol	811	.	a	t	13.00000000000000000000000	q30;ac5	DP=634;AC=4;AF=0.0063
hxb2_pol	812	.	g	a	58.00000000000000000000000	PASS	DP=634;AC=10;AF=0.0158
hxb2_pol	813	.	a	g	20.00000000000000000000000	q30	DP=609;AC=5;AF=0.0082
hxb2_pol	816	.	a	c	18.00000000000000000000000	q30	DP=652;AC=5;AF=0.0077
hxb2_pol	817	.	c	a	40.00000000000000000000000	PASS	DP=655;AC=8;AF=0.0122
hxb2_pol	818	.	a	c	19.00000000000000000000000	q30	DP=642;AC=5;AF=0.0078
hxb2_pol	821	.	a	t	12.00000000000000000000000	q30;ac5	DP=698;AC=4;AF=0.0057
hxb2_pol	822	.	t	c	6.000000000000000000000000	q30;ac5	DP=748;AC=3;AF=0.0040
hxb2_pol	830	.	t	a	2.000000000000000000000000	q30;ac5	DP=868;AC=2;AF=0.0023
hxb2_pol	834	.	t	a	2.000000000000000000000000	q30;ac5	DP=890;AC=2;AF=0.0022
hxb2_pol	835	.	a	t	2.000000000000000000000000	q30;ac5	DP=891;AC=2;AF=0.0022
hxb2_pol	837	.	c	t	2.000000000000000000000000	q30;ac5	DP=895;AC=2;AF=0.0022
hxb2_pol	839	.	a	t	5.000000000000000000000000	q30;ac5	DP=896;AC=3;AF=0.0033
hxb2_pol	840	.	t	c	2.000000000000000000000000	q30;ac5	DP=905;AC=2;AF=0.0022
hxb2_pol	841	.	c	a	2.000000000000000000000000	q30;ac5	DP=911;AC=2;AF=0.0022
hxb2_pol	844	.	t	a	2.000000000000000000000000	q30;ac5	DP=921;AC=2;AF=0.0022
hxb2_pol	853	.	g	t	2.000000000000000000000000	q30;ac5	DP=945;AC=2;AF=0.0021
hxb2_pol	854	.	a	g	2.000000000000000000000000	q30;ac5	DP=951;AC=2;AF=0.0021
hxb2_pol	855	.	t	a	2.000000000000000000000000	q30;ac5	DP=939;AC=2;AF=0.0021
hxb2_pol	858	.	g	t	2.000000000000000000000000	q30;ac5	DP=967;AC=2;AF=0.0021
hxb2_pol	874	.	t	c	2.000000000000000000000000	q30;ac5	DP=989;AC=2;AF=0.0020
hxb2_pol	875	.	t	a	4.000000000000000000000000	q30;ac5	DP=1002;AC=3;AF=0.0030
hxb2_pol	876	.	a	g	4.000000000000000000000000	q30;ac5	DP=1003;AC=3;AF=0.0030
hxb2_pol	876	.	a	t	4.000000000000000000000000	q30;ac5	DP=1003;AC=3;AF=0.0030
hxb2_pol	877	.	g	a	16.00000000000000000000000	q30	DP=1003;AC=6;AF=0.0060
hxb2_pol	878	.	a	g	8.000000000000000000000000	q30;ac5	DP=987;AC=4;AF=0.0041
hxb2_pol	881	.	t	a	4.000000000000000000000000	q30;ac5	DP=1011;AC=3;AF=0.0030
hxb2_pol	882	.	a	t	4.000000000000000000000000	q30;ac5	DP=1011;AC=3;AF=0.0030
hxb2_pol	883	.	g	a	2.000000000000000000000000	q30;ac5	DP=988;AC=2;AF=0.0020
hxb2_pol	891	.	t	a	1.000000000000000000000000	q30;ac5	DP=1022;AC=2;AF=0.0020
hxb2_pol	892	.	a	g	1.000000000000000000000000	q30;ac5	DP=1020;AC=2;AF=0.0020
hxb2_pol	893	.	g	a	7.000000000000000000000000	q30;ac5	DP=1017;AC=4;AF=0.0039
hxb2_pol	894	.	a	g	2.000000000000000000000000	q30;ac5	DP=1000;AC=2;AF=0.0020
hxb2_pol	895	.	a	c	7.000000000000000000000000	q30;ac5	DP=1008;AC=4;AF=0.0040
hxb2_pol	896	.	c	a	28.00000000000000000000000	q30	DP=1006;AC=8;AF=0.0080
hxb2_pol	897	.	a	c	18.00000000000000000000000	q30	DP=918;AC=6;AF=0.0065
hxb2_pol	901	.	a	t	7.000000000000000000000000	q30;ac5	DP=1020;AC=4;AF=0.0039
hxb2_pol	902	.	t	a	16.00000000000000000000000	q30	DP=1026;AC=6;AF=0.0058
hxb2_pol	903	.	a	g	7.000000000000000000000000	q30;ac5	DP=1043;AC=4;AF=0.0038
hxb2_pol	903	.	a	t	1.000000000000000000000000	q30;ac5	DP=1043;AC=2;AF=0.0019
hxb2_pol	904	.	g	a	4.000000000000000000000000	q30;ac5	DP=1054;AC=3;AF=0.0028
hxb2_pol	905	.	a	g	4.000000000000000000000000	q30;ac5	DP=1062;AC=3;AF=0.0028
hxb2_pol	913	.	a	g	1.000000000000000000000000	q30;ac5	DP=1099;AC=2;AF=0.0018
hxb2_pol	914	.	g	a	1.000000000000000000000000	q30;ac5	DP=1099;AC=2;AF=0.0018
hxb2_pol	924	.	g	t	1.000000000000000000000000	q30;ac5	DP=1120;AC=2;AF=0.0018
hxb2_pol	925	.	t	g	1.000000000000000000000000	q30;ac5	DP=1116;AC=2;AF=0.0018
hxb2_pol	926	.	t	g	3.000000000000000000000000	q30;ac5	DP=1131;AC=3;AF=0.0027
hxb2_pol	927	.	g	a	6.000000000000000000000000	q30;ac5	DP=1132;AC=4;AF=0.0035
hxb2_pol	927	.	g	t	3.000000000000000000000000	q30;ac5	DP=1132;AC=3;AF=0.0027
hxb2_pol	928	.	a	g	25.00000000000000000000000	q30	DP=1131;AC=8;AF=0.0071
hxb2_pol	929	.	g	a	3.000000000000000000000000	q30;ac5	DP=1120;AC=3;AF=0.0027
hxb2_pol	930	.	g	t	14.00000000000000000000000	q30	DP=1134;AC=6;AF=0.0053
hxb2_pol	931	.	t	g	37.00000000000000000000000	PASS	DP=1132;AC=10;AF=0.0088
hxb2_pol	932	.	g	t	10.00000000000000000000000	q30	DP=1078;AC=5;AF=0.0046
hxb2_pol	935	.	g	a	3.000000000000000000000000	q30;ac5	DP=1141;AC=3;AF=0.0026
hxb2_pol	936	.	a	c	3.000000000000000000000000	q30;ac5	DP=1140;AC=3;AF=0.0026
hxb2_pol	936	.	a	g	6.000000000000000000000000	q30;ac5	DP=1140;AC=4;AF=0.0035
hxb2_pol	937	.	c	a	3.000000000000000000000000	q30;ac5	DP=1138;AC=3;AF=0.0026
hxb2_pol	937	.	c	t	3.000000000000000000000000	q30;ac5	DP=1138;AC=3;AF=0.0026
hxb2_pol	938	.	t	c	3.000000000000000000000000	q30;ac5	DP=1136;AC=3;AF=0.0026
hxb2_pol	940	.	a	t	6.000000000000000000000000	q30;ac5	DP=1148;AC=4;AF=0.0035
hxb2_pol	941	.	c	a	14.00000000000000000000000	q30	DP=1149;AC=6;AF=0.0052
hxb2_pol	946	.	c	a	3.000000000000000000000000	q30;ac5	DP=1146;AC=3;AF=0.0026
hxb2_pol	948	.	a	c	6.000000000000000000000000	q30;ac5	DP=1156;AC=4;AF=0.0035
hxb2_pol	949	.	g	a	6.000000000000000000000000	q30;ac5	DP=1131;AC=4;AF=0.0035
hxb2_pol	950	.	a	g	6.000000000000000000000000	q30;ac5	DP=1101;AC=4;AF=0.0036
hxb2_pol	951	.	c	a	6.000000000000000000000000	q30;ac5	DP=1093;AC=4;AF=0.0037
hxb2_pol	952	.	a	c	8.000000000000000000000000	q30;ac5	DP=967;AC=4;AF=0.0041
hxb2_pol	957	.	a	c	15.00000000000000000000000	q30	DP=1105;AC=6;AF=0.0054
hxb2_pol	958	.	c	a	10.00000000000000000000000	q30	DP=1110;AC=5;AF=0.0045
hxb2_pol	959	.	a	t	10.00000000000000000000000	q30	DP=1123;AC=5;AF=0.0045
hxb2_pol	960	.	t	c	6.000000000000000000000000	q30;ac5	DP=1155;AC=4;AF=0.0035
hxb2_pol	961	.	c	a	3.000000000000000000000000	q30;ac5	DP=1198;AC=3;AF=0.0025
hxb2_pol	962	.	a	g	3.000000000000000000000000	q30;ac5	DP=1214;AC=3;AF=0.0025
hxb2_pol	963	.	g	a	3.000000000000000000000000	q30;ac5	DP=1217;AC=3;AF=0.0025
hxb2_pol	966	.	a	g	3.000000000000000000000000	q30;ac5	DP=1237;AC=3;AF=0.0024
hxb2_pol	967	.	g	a	9.000000000000000000000000	q30	DP=1239;AC=5;AF=0.0040
hxb2_pol	968	.	a	g	1.000000000000000000000000	q30;ac5	DP=1239;AC=2;AF=0.0016
hxb2_pol	969	.	a	c	5.000000000000000000000000	q30;ac5	DP=1251;AC=4;AF=0.0032
hxb2_pol	970	.	c	a	8.000000000000000000000000	q30	DP=1255;AC=5;AF=0.0040
hxb2_pol	971	.	c	t	3.000000000000000000000000	q30;ac5	DP=1268;AC=3;AF=0.0024
hxb2_pol	972	.	t	c	27.00000000000000000000000	q30	DP=1270;AC=9;AF=0.0071
hxb2_pol	973	.	c	t	12.00000000000000000000000	q30	DP=1268;AC=6;AF=0.0047
hxb2_pol	974	.	c	a	16.00000000000000000000000	q30	DP=1279;AC=7;AF=0.0055
hxb2_pol	975	.	a	c	8.000000000000000000000000	q30	DP=1282;AC=5;AF=0.0039
hxb2_pol	975	.	a	t	16.00000000000000000000000	q30	DP=1282;AC=7;AF=0.0055
hxb2_pol	976	.	t	a	12.00000000000000000000000	q30	DP=1274;AC=6;AF=0.0047
hxb2_pol	977	.	t	c	27.00000000000000000000000	q30	DP=1287;AC=9;AF=0.0070
hxb2_pol	978	.	c	t	5.000000000000000000000000	q30;ac5	DP=1275;AC=4;AF=0.0031
hxb2_pol	979	.	c	t	21.00000000000000000000000	q30	DP=1290;AC=8;AF=0.0062
hxb2_pol	980	.	t	c	12.00000000000000000000000	q30	DP=1262;AC=6;AF=0.0048
hxb2_pol	982	.	t	g	16.00000000000000000000000	q30	DP=1295;AC=7;AF=0.0054
hxb2_pol	983	.	g	t	2.000000000000000000000000	q30;ac5	DP=1284;AC=3;AF=0.0023
hxb2_pol	984	.	g	a	8.000000000000000000000000	q30	DP=1312;AC=5;AF=0.0038
hxb2_pol	985	.	a	g	2.000000000000000000000000	q30;ac5	DP=1316;AC=3;AF=0.0023
hxb2_pol	985	.	a	t	8.000000000000000000000000	q30	DP=1316;AC=5;AF=0.0038
hxb2_pol	986	.	t	a	2.000000000000000000000000	q30;ac5	DP=1320;AC=3;AF=0.0023
hxb2_pol	986	.	t	g	5.000000000000000000000000	q30;ac5	DP=1320;AC=4;AF=0.0030
hxb2_pol	987	.	g	t	2.000000000000000000000000	q30;ac5	DP=1296;AC=3;AF=0.0023
hxb2_pol	989	.	g	t	2.000000000000000000000000	q30;ac5	DP=1334;AC=3;AF=0.0022
hxb2_pol	990	.	t	g	5.000000000000000000000000	q30;ac5	DP=1324;AC=4;AF=0.0030
hxb2_pol	991	.	t	a	2.000000000000000000000000	q30;ac5	DP=1347;AC=3;AF=0.0022
hxb2_pol	992	.	a	t	15.00000000000000000000000	q30	DP=1351;AC=7;AF=0.0052
hxb2_pol	993	.	t	a	2.000000000000000000000000	q30;ac5	DP=1357;AC=3;AF=0.0022
hxb2_pol	993	.	t	g	1.000000000000000000000000	q30;ac5	DP=1357;AC=2;AF=0.0015
hxb2_pol	994	.	g	a	1.000000000000000000000000	q30;ac5	DP=1361;AC=2;AF=0.0015
hxb2_pol	994	.	g	t	2.000000000000000000000000	q30;ac5	DP=1361;AC=3;AF=0.0022
hxb2_pol	995	.	a	g	2.000000000000000000000000	q30;ac5	DP=1343;AC=3;AF=0.0022
hxb2_pol	997	.	c	a	1.000000000000000000000000	q30;ac5	DP=1366;AC=2;AF=0.0015
hxb2_pol	998	.	t	c	1.000000000000000000000000	q30;ac5	DP=1370;AC=2;AF=0.0015
hxb2_pol	999	.	c	t	1.000000000000000000000000	q30;ac5	DP=1365;AC=2;AF=0.0015
hxb2_pol	1002	.	t	a	1.000000000000000000000000	q30;ac5	DP=1380;AC=2;AF=0.0014
hxb2_pol	1003	.	c	t	1.000000000000000000000000	q30;ac5	DP=1366;AC=2;AF=0.0015
hxb2_pol	1004	.	c	t	1.000000000000000000000000	q30;ac5	DP=1391;AC=2;AF=0.0014
hxb2_pol	1005	.	t	g	1.000000000000000000000000	q30;ac5	DP=1393;AC=2;AF=0.0014
hxb2_pol	1006	.	g	a	1.000000000000000000000000	q30;ac5	DP=1395;AC=2;AF=0.0014
hxb2_pol	1007	.	a	t	1.000000000000000000000000	q30;ac5	DP=1394;AC=2;AF=0.0014
hxb2_pol	1008	.	t	a	7.000000000000000000000000	q30	DP=1393;AC=5;AF=0.0036
hxb2_pol	1009	.	a	t	1.000000000000000000000000	q30;ac5	DP=1358;AC=2;AF=0.0015
hxb2_pol	1013	.	g	t	4.000000000000000000000000	q30;ac5	DP=1395;AC=4;AF=0.0029
hxb2_pol	1014	.	g	a	2.000000000000000000000000	q30;ac5	DP=1401;AC=3;AF=0.0021
hxb2_pol	1015	.	a	c	4.000000000000000000000000	q30;ac5	DP=1401;AC=4;AF=0.0029
hxb2_pol	1015	.	a	g	1.000000000000000000000000	q30;ac5	DP=1401;AC=2;AF=0.0014
hxb2_pol	1016	.	c	a	15.00000000000000000000000	q30	DP=1409;AC=7;AF=0.0050
hxb2_pol	1017	.	a	g	4.000000000000000000000000	q30;ac5	DP=1414;AC=4;AF=0.0028
hxb2_pol	1018	.	g	t	2.000000000000000000000000	q30;ac5	DP=1411;AC=3;AF=0.0021
hxb2_pol	1027	.	a	t	4.000000000000000000000000	q30;ac5	DP=1426;AC=4;AF=0.0028
hxb2_pol	1028	.	t	a	2.000000000000000000000000	q30;ac5	DP=1427;AC=3;AF=0.0021
hxb2_pol	1031	.	t	g	4.000000000000000000000000	q30;ac5	DP=1428;AC=4;AF=0.0028
hxb2_pol	1033	.	c	g	2.000000000000000000000000	q30;ac5	DP=1434;AC=3;AF=0.0021
hxb2_pol	1035	.	g	t	4.000000000000000000000000	q30;ac5	DP=1427;AC=4;AF=0.0028
hxb2_pol	1036	.	c	g	7.000000000000000000000000	q30	DP=1397;AC=5;AF=0.0036
hxb2_pol	1037	.	c	a	1.000000000000000000000000	q30;ac5	DP=1393;AC=2;AF=0.0014
hxb2_pol	1038	.	a	c	19.00000000000000000000000	q30	DP=1393;AC=8;AF=0.0057
hxb2_pol	1038	.	a	g	2.000000000000000000000000	q30;ac5	DP=1393;AC=3;AF=0.0022
hxb2_pol	1039	.	g	a	55.00000000000000000000000	PASS	DP=1394;AC=14;AF=0.0100
hxb2_pol	1040	.	a	g	46.00000000000000000000000	PASS	DP=1277;AC=12;AF=0.0094
hxb2_pol	1047	.	c	a	2.000000000000000000000000	q30;ac5	DP=1439;AC=3;AF=0.0021
hxb2_pol	1054	.	a	g	2.000000000000000000000000	q30;ac5	DP=1457;AC=3;AF=0.0021
hxb2_pol	1055	.	c	a	2.000000000000000000000000	q30;ac5	DP=1457;AC=3;AF=0.0021
hxb2_pol	1056	.	t	c	2.000000000000000000000000	q30;ac5	DP=1461;AC=3;AF=0.0021
hxb2_pol	1057	.	g	t	2.000000000000000000000000	q30;ac5	DP=1460;AC=3;AF=0.0021
hxb2_pol	1059	.	c	t	2.000000000000000000000000	q30;ac5	DP=1468;AC=3;AF=0.0020
hxb2_pol	1072	.	a	g	2.000000000000000000000000	q30;ac5	DP=1448;AC=3;AF=0.0021
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hxb2_pol	1075	.	t	g	4.000000000000000000000000	q30;ac5	DP=1452;AC=4;AF=0.0028
hxb2_pol	1077	.	a	t	4.000000000000000000000000	q30;ac5	DP=1438;AC=4;AF=0.0028
hxb2_pol	1078	.	g	a	2.000000000000000000000000	q30;ac5	DP=1429;AC=3;AF=0.0021
hxb2_pol	1078	.	g	t	2.000000000000000000000000	q30;ac5	DP=1429;AC=3;AF=0.0021
hxb2_pol	1079	.	t	g	10.00000000000000000000000	q30	DP=1410;AC=6;AF=0.0043
hxb2_pol	1080	.	g	t	5.000000000000000000000000	q30;ac5	DP=1329;AC=4;AF=0.0030
hxb2_pol	1083	.	g	a	1.000000000000000000000000	q30;ac5	DP=1379;AC=2;AF=0.0015
hxb2_pol	1084	.	a	g	20.00000000000000000000000	q30	DP=1357;AC=8;AF=0.0059
hxb2_pol	1086	.	a	t	1.000000000000000000000000	q30;ac5	DP=1390;AC=2;AF=0.0014
hxb2_pol	1087	.	t	a	7.000000000000000000000000	q30	DP=1376;AC=5;AF=0.0036
hxb2_pol	1088	.	t	g	2.000000000000000000000000	q30;ac5	DP=1403;AC=3;AF=0.0021
hxb2_pol	1089	.	g	a	2.000000000000000000000000	q30;ac5	DP=1418;AC=3;AF=0.0021
hxb2_pol	1091	.	a	t	2.000000000000000000000000	q30;ac5	DP=1441;AC=3;AF=0.0021
hxb2_pol	1097	.	c	g	2.000000000000000000000000	q30;ac5	DP=1457;AC=3;AF=0.0021
hxb2_pol	1098	.	a	c	7.000000000000000000000000	q30	DP=1448;AC=5;AF=0.0035
hxb2_pol	1099	.	a	g	2.000000000000000000000000	q30;ac5	DP=1469;AC=3;AF=0.0020
hxb2_pol	1100	.	g	t	2.000000000000000000000000	q30;ac5	DP=1473;AC=3;AF=0.0020
hxb2_pol	1101	.	t	c	2.000000000000000000000000	q30;ac5	DP=1470;AC=3;AF=0.0020
hxb2_pol	1102	.	c	a	2.000000000000000000000000	q30;ac5	DP=1475;AC=3;AF=0.0020
hxb2_pol	1104	.	g	a	4.000000000000000000000000	q30;ac5	DP=1475;AC=4;AF=0.0027
hxb2_pol	1108	.	t	a	4.000000000000000000000000	q30;ac5	DP=1476;AC=4;AF=0.0027
hxb2_pol	1109	.	a	c	4.000000000000000000000000	q30;ac5	DP=1479;AC=4;AF=0.0027
hxb2_pol	1109	.	a	t	2.000000000000000000000000	q30;ac5	DP=1479;AC=3;AF=0.0020
hxb2_pol	1110	.	c	a	7.000000000000000000000000	q30	DP=1453;AC=5;AF=0.0034
hxb2_pol	1112	.	c	a	28.00000000000000000000000	q30	DP=1484;AC=10;AF=0.0067
hxb2_pol	1113	.	a	c	10.00000000000000000000000	q30	DP=1485;AC=6;AF=0.0040
hxb2_pol	1113	.	a	g	33.00000000000000000000000	PASS	DP=1485;AC=11;AF=0.0074
hxb2_pol	1114	.	g	a	14.00000000000000000000000	q30	DP=1456;AC=7;AF=0.0048
hxb2_pol	1116	.	g	a	10.00000000000000000000000	q30	DP=1498;AC=6;AF=0.0040
hxb2_pol	1117	.	a	g	22.00000000000000000000000	q30	DP=1499;AC=9;AF=0.0060
hxb2_pol	1117	.	a	t	13.00000000000000000000000	q30	DP=1499;AC=7;AF=0.0047
hxb2_pol	1118	.	t	a	33.00000000000000000000000	PASS	DP=1492;AC=11;AF=0.0074
hxb2_pol	1119	.	t	a	13.00000000000000000000000	q30	DP=1507;AC=7;AF=0.0046
hxb2_pol	1120	.	a	t	28.00000000000000000000000	q30	DP=1474;AC=10;AF=0.0068
hxb2_pol	1122	.	a	g	4.000000000000000000000000	q30;ac5	DP=1516;AC=4;AF=0.0026
hxb2_pol	1123	.	g	a	17.00000000000000000000000	q30	DP=1528;AC=8;AF=0.0052
hxb2_pol	1123	.	g	t	3.000000000000000000000000	q30;ac5	DP=1528;AC=4;AF=0.0026
hxb2_pol	1124	.	t	g	13.00000000000000000000000	q30	DP=1530;AC=7;AF=0.0046
hxb2_pol	1125	.	a	t	13.00000000000000000000000	q30	DP=1526;AC=7;AF=0.0046
hxb2_pol	1127	.	g	a	9.000000000000000000000000	q30	DP=1522;AC=6;AF=0.0039
hxb2_pol	1129	.	c	g	3.000000000000000000000000	q30;ac5	DP=1551;AC=4;AF=0.0026
hxb2_pol	1130	.	a	c	3.000000000000000000000000	q30;ac5	DP=1537;AC=4;AF=0.0026
hxb2_pol	1131	.	a	t	1.000000000000000000000000	q30;ac5	DP=1552;AC=3;AF=0.0019
hxb2_pol	1132	.	t	a	3.000000000000000000000000	q30;ac5	DP=1534;AC=4;AF=0.0026
hxb2_pol	1134	.	a	t	1.000000000000000000000000	q30;ac5	DP=1555;AC=3;AF=0.0019
hxb2_pol	1136	.	g	t	6.000000000000000000000000	q30	DP=1554;AC=5;AF=0.0032
hxb2_pol	1141	.	c	a	1.000000000000000000000000	q30;ac5	DP=1550;AC=3;AF=0.0019
hxb2_pol	1141	.	c	t	1.000000000000000000000000	q30;ac5	DP=1550;AC=3;AF=0.0019
hxb2_pol	1142	.	t	c	13.00000000000000000000000	q30	DP=1554;AC=7;AF=0.0045
hxb2_pol	1143	.	c	t	2.000000000000000000000000	q30;ac5	DP=1547;AC=3;AF=0.0019
hxb2_pol	1144	.	c	t	1.000000000000000000000000	q30;ac5	DP=1556;AC=3;AF=0.0019
hxb2_pol	1145	.	t	c	2.000000000000000000000000	q30;ac5	DP=1538;AC=3;AF=0.0020
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hxb2_pol	1454	.	c	t	9.000000000000000000000000	q30	DP=1230;AC=5;AF=0.0041
hxb2_pol	1455	.	t	c	17.00000000000000000000000	q30	DP=1234;AC=7;AF=0.0057
hxb2_pol	1456	.	c	t	3.000000000000000000000000	q30;ac5	DP=1236;AC=3;AF=0.0024
hxb2_pol	1458	.	t	a	1.000000000000000000000000	q30;ac5	DP=1233;AC=2;AF=0.0016
hxb2_pol	1461	.	a	t	9.000000000000000000000000	q30	DP=1226;AC=5;AF=0.0041
hxb2_pol	1462	.	t	a	1.000000000000000000000000	q30;ac5	DP=1210;AC=2;AF=0.0017
hxb2_pol	1464	.	t	a	13.00000000000000000000000	q30	DP=1229;AC=6;AF=0.0049
hxb2_pol	1467	.	a	c	1.000000000000000000000000	q30;ac5	DP=1249;AC=2;AF=0.0016
hxb2_pol	1468	.	c	a	3.000000000000000000000000	q30;ac5	DP=1262;AC=3;AF=0.0024
hxb2_pol	1469	.	t	c	3.000000000000000000000000	q30;ac5	DP=1269;AC=3;AF=0.0024
hxb2_pol	1470	.	g	t	3.000000000000000000000000	q30;ac5	DP=1270;AC=3;AF=0.0024
hxb2_pol	1471	.	c	g	5.000000000000000000000000	q30;ac5	DP=1256;AC=4;AF=0.0032
hxb2_pol	1474	.	a	c	2.000000000000000000000000	q30;ac5	DP=1279;AC=3;AF=0.0023
hxb2_pol	1475	.	t	a	17.00000000000000000000000	q30	DP=1277;AC=7;AF=0.0055
hxb2_pol	1476	.	a	t	5.000000000000000000000000	q30;ac5	DP=1276;AC=4;AF=0.0031
hxb2_pol	1477	.	c	a	8.000000000000000000000000	q30	DP=1272;AC=5;AF=0.0039
hxb2_pol	1478	.	a	c	3.000000000000000000000000	q30;ac5	DP=1214;AC=3;AF=0.0025
hxb2_pol	1481	.	a	g	17.00000000000000000000000	q30	DP=1264;AC=7;AF=0.0055
hxb2_pol	1482	.	g	a	3.000000000000000000000000	q30;ac5	DP=1257;AC=3;AF=0.0024
hxb2_pol	1483	.	g	a	27.00000000000000000000000	q30	DP=1267;AC=9;AF=0.0071
hxb2_pol	1484	.	a	g	5.000000000000000000000000	q30;ac5	DP=1237;AC=4;AF=0.0032
hxb2_pol	1486	.	a	c	16.00000000000000000000000	q30	DP=1288;AC=7;AF=0.0054
hxb2_pol	1487	.	c	a	21.00000000000000000000000	q30	DP=1312;AC=8;AF=0.0061
hxb2_pol	1488	.	a	t	16.00000000000000000000000	q30	DP=1324;AC=7;AF=0.0053
hxb2_pol	1489	.	t	g	16.00000000000000000000000	q30	DP=1329;AC=7;AF=0.0053
hxb2_pol	1492	.	g	a	11.00000000000000000000000	q30	DP=1335;AC=6;AF=0.0045
hxb2_pol	1496	.	c	a	11.00000000000000000000000	q30	DP=1355;AC=6;AF=0.0044
hxb2_pol	1497	.	a	c	7.000000000000000000000000	q30	DP=1357;AC=5;AF=0.0037
hxb2_pol	1498	.	t	a	7.000000000000000000000000	q30	DP=1360;AC=5;AF=0.0037
hxb2_pol	1499	.	g	t	7.000000000000000000000000	q30	DP=1353;AC=5;AF=0.0037
hxb2_pol	1500	.	g	t	1.000000000000000000000000	q30;ac5	DP=1371;AC=2;AF=0.0015
hxb2_pol	1501	.	t	g	7.000000000000000000000000	q30	DP=1368;AC=5;AF=0.0037
hxb2_pol	1502	.	g	t	2.000000000000000000000000	q30;ac5	DP=1362;AC=3;AF=0.0022
hxb2_pol	1508	.	a	g	1.000000000000000000000000	q30;ac5	DP=1378;AC=2;AF=0.0015
hxb2_pol	1509	.	g	a	1.000000000000000000000000	q30;ac5	DP=1376;AC=2;AF=0.0015
hxb2_pol	1509	.	g	t	2.000000000000000000000000	q30;ac5	DP=1376;AC=3;AF=0.0022
hxb2_pol	1510	.	t	a	2.000000000000000000000000	q30;ac5	DP=1376;AC=3;AF=0.0022
hxb2_pol	1510	.	t	g	1.000000000000000000000000	q30;ac5	DP=1376;AC=2;AF=0.0015
hxb2_pol	1511	.	a	t	7.000000000000000000000000	q30	DP=1380;AC=5;AF=0.0036
hxb2_pol	1512	.	t	a	1.000000000000000000000000	q30;ac5	DP=1376;AC=2;AF=0.0015
hxb2_pol	1513	.	t	g	1.000000000000000000000000	q30;ac5	DP=1386;AC=2;AF=0.0014
hxb2_pol	1514	.	g	t	2.000000000000000000000000	q30;ac5	DP=1369;AC=3;AF=0.0022
hxb2_pol	1515	.	g	c	1.000000000000000000000000	q30;ac5	DP=1391;AC=2;AF=0.0014
hxb2_pol	1516	.	c	g	1.000000000000000000000000	q30;ac5	DP=1389;AC=2;AF=0.0014
hxb2_pol	1517	.	a	c	2.000000000000000000000000	q30;ac5	DP=1380;AC=3;AF=0.0022
hxb2_pol	1518	.	a	g	1.000000000000000000000000	q30;ac5	DP=1393;AC=2;AF=0.0014
hxb2_pol	1519	.	g	a	1.000000000000000000000000	q30;ac5	DP=1393;AC=2;AF=0.0014
hxb2_pol	1519	.	g	c	2.000000000000000000000000	q30;ac5	DP=1393;AC=3;AF=0.0022
hxb2_pol	1520	.	c	g	2.000000000000000000000000	q30;ac5	DP=1384;AC=3;AF=0.0022
hxb2_pol	1522	.	a	c	2.000000000000000000000000	q30;ac5	DP=1391;AC=3;AF=0.0022
hxb2_pol	1523	.	c	a	2.000000000000000000000000	q30;ac5	DP=1386;AC=3;AF=0.0022
hxb2_pol	1524	.	c	t	1.000000000000000000000000	q30;ac5	DP=1393;AC=2;AF=0.0014
hxb2_pol	1525	.	t	c	1.000000000000000000000000	q30;ac5	DP=1392;AC=2;AF=0.0014
hxb2_pol	1525	.	t	g	2.000000000000000000000000	q30;ac5	DP=1392;AC=3;AF=0.0022
hxb2_pol	1526	.	g	t	1.000000000000000000000000	q30;ac5	DP=1385;AC=2;AF=0.0014
hxb2_pol	1527	.	g	a	1.000000000000000000000000	q30;ac5	DP=1393;AC=2;AF=0.0014
hxb2_pol	1528	.	a	g	1.000000000000000000000000	q30;ac5	DP=1396;AC=2;AF=0.0014
hxb2_pol	1528	.	a	t	1.000000000000000000000000	q30;ac5	DP=1396;AC=2;AF=0.0014
hxb2_pol	1529	.	t	a	2.000000000000000000000000	q30;ac5	DP=1383;AC=3;AF=0.0022
hxb2_pol	1530	.	t	c	1.000000000000000000000000	q30;ac5	DP=1397;AC=2;AF=0.0014
hxb2_pol	1531	.	c	t	1.000000000000000000000000	q30;ac5	DP=1384;AC=2;AF=0.0014
hxb2_pol	1532	.	c	t	1.000000000000000000000000	q30;ac5	DP=1392;AC=2;AF=0.0014
hxb2_pol	1534	.	g	t	1.000000000000000000000000	q30;ac5	DP=1392;AC=2;AF=0.0014
hxb2_pol	1535	.	a	g	1.000000000000000000000000	q30;ac5	DP=1393;AC=2;AF=0.0014
hxb2_pol	1537	.	t	g	1.000000000000000000000000	q30;ac5	DP=1391;AC=2;AF=0.0014
hxb2_pol	1538	.	g	t	1.000000000000000000000000	q30;ac5	DP=1357;AC=2;AF=0.0015
hxb2_pol	1540	.	g	a	1.000000000000000000000000	q30;ac5	DP=1385;AC=2;AF=0.0014
hxb2_pol	1541	.	a	g	20.00000000000000000000000	q30	DP=1378;AC=8;AF=0.0058
hxb2_pol	1542	.	g	a	25.00000000000000000000000	q30	DP=1386;AC=9;AF=0.0065
hxb2_pol	1542	.	g	t	2.000000000000000000000000	q30;ac5	DP=1386;AC=3;AF=0.0022
hxb2_pol	1543	.	t	g	25.00000000000000000000000	q30	DP=1365;AC=9;AF=0.0066
hxb2_pol	1545	.	t	g	2.000000000000000000000000	q30;ac5	DP=1389;AC=3;AF=0.0022
hxb2_pol	1546	.	g	t	42.00000000000000000000000	PASS	DP=1388;AC=12;AF=0.0086
hxb2_pol	1547	.	t	g	25.00000000000000000000000	q30	DP=1376;AC=9;AF=0.0065
hxb2_pol	1548	.	t	a	4.000000000000000000000000	q30;ac5	DP=1388;AC=4;AF=0.0029
hxb2_pol	1549	.	a	t	15.00000000000000000000000	q30	DP=1377;AC=7;AF=0.0051
hxb2_pol	1550	.	a	t	1.000000000000000000000000	q30;ac5	DP=1381;AC=2;AF=0.0014
hxb2_pol	1551	.	t	a	25.00000000000000000000000	q30	DP=1379;AC=9;AF=0.0065
hxb2_pol	1552	.	a	c	1.000000000000000000000000	q30;ac5	DP=1378;AC=2;AF=0.0015
hxb2_pol	1552	.	a	t	20.00000000000000000000000	q30	DP=1378;AC=8;AF=0.0058
hxb2_pol	1553	.	c	a	21.00000000000000000000000	q30	DP=1310;AC=8;AF=0.0061
hxb2_pol	1556	.	c	t	25.00000000000000000000000	q30	DP=1365;AC=9;AF=0.0066
hxb2_pol	1557	.	t	c	57.00000000000000000000000	PASS	DP=1362;AC=14;AF=0.0103
hxb2_pol	1558	.	c	t	16.00000000000000000000000	q30	DP=1338;AC=7;AF=0.0052
hxb2_pol	1560	.	c	t	15.00000000000000000000000	q30	DP=1369;AC=7;AF=0.0051
hxb2_pol	1561	.	t	c	11.00000000000000000000000	q30	DP=1366;AC=6;AF=0.0044
hxb2_pol	1562	.	t	a	7.000000000000000000000000	q30	DP=1397;AC=5;AF=0.0036
hxb2_pol	1563	.	a	g	7.000000000000000000000000	q30	DP=1408;AC=5;AF=0.0036
hxb2_pol	1563	.	a	t	4.000000000000000000000000	q30;ac5	DP=1408;AC=4;AF=0.0028
hxb2_pol	1564	.	g	a	2.000000000000000000000000	q30;ac5	DP=1408;AC=3;AF=0.0021
hxb2_pol	1564	.	g	t	1.000000000000000000000000	q30;ac5	DP=1408;AC=2;AF=0.0014
hxb2_pol	1565	.	t	g	7.000000000000000000000000	q30	DP=1413;AC=5;AF=0.0035
hxb2_pol	1566	.	g	a	2.000000000000000000000000	q30;ac5	DP=1413;AC=3;AF=0.0021
hxb2_pol	1566	.	g	t	4.000000000000000000000000	q30;ac5	DP=1413;AC=4;AF=0.0028
hxb2_pol	1567	.	a	g	4.000000000000000000000000	q30;ac5	DP=1378;AC=4;AF=0.0029
hxb2_pol	1569	.	a	t	4.000000000000000000000000	q30;ac5	DP=1424;AC=4;AF=0.0028
hxb2_pol	1570	.	t	a	10.00000000000000000000000	q30	DP=1419;AC=6;AF=0.0042
hxb2_pol	1572	.	a	t	19.00000000000000000000000	q30	DP=1435;AC=8;AF=0.0056
hxb2_pol	1573	.	t	a	7.000000000000000000000000	q30	DP=1440;AC=5;AF=0.0035
hxb2_pol	1573	.	t	g	2.000000000000000000000000	q30;ac5	DP=1440;AC=3;AF=0.0021
hxb2_pol	1574	.	g	t	14.00000000000000000000000	q30	DP=1419;AC=7;AF=0.0049
hxb2_pol	1576	.	t	g	7.000000000000000000000000	q30	DP=1438;AC=5;AF=0.0035
hxb2_pol	1577	.	a	t	7.000000000000000000000000	q30	DP=1436;AC=5;AF=0.0035
hxb2_pol	1578	.	c	a	4.000000000000000000000000	q30;ac5	DP=1428;AC=4;AF=0.0028
hxb2_pol	1580	.	a	g	2.000000000000000000000000	q30;ac5	DP=1443;AC=3;AF=0.0021
hxb2_pol	1586	.	a	g	4.000000000000000000000000	q30;ac5	DP=1447;AC=4;AF=0.0028
hxb2_pol	1587	.	g	a	2.000000000000000000000000	q30;ac5	DP=1442;AC=3;AF=0.0021
hxb2_pol	1590	.	a	g	19.00000000000000000000000	q30	DP=1437;AC=8;AF=0.0056
hxb2_pol	1591	.	g	a	41.00000000000000000000000	PASS	DP=1434;AC=12;AF=0.0084
hxb2_pol	1592	.	a	g	2.000000000000000000000000	q30;ac5	DP=1422;AC=3;AF=0.0021
hxb2_pol	1593	.	a	c	19.00000000000000000000000	q30	DP=1434;AC=8;AF=0.0056
hxb2_pol	1594	.	c	a	7.000000000000000000000000	q30	DP=1398;AC=5;AF=0.0036
hxb2_pol	1596	.	c	a	10.00000000000000000000000	q30	DP=1438;AC=6;AF=0.0042
hxb2_pol	1597	.	a	t	2.000000000000000000000000	q30;ac5	DP=1442;AC=3;AF=0.0021
hxb2_pol	1598	.	t	a	7.000000000000000000000000	q30	DP=1444;AC=5;AF=0.0035
hxb2_pol	1600	.	g	a	2.000000000000000000000000	q30;ac5	DP=1452;AC=3;AF=0.0021
hxb2_pol	1608	.	a	c	2.000000000000000000000000	q30;ac5	DP=1452;AC=3;AF=0.0021
hxb2_pol	1609	.	g	a	14.00000000000000000000000	q30	DP=1448;AC=7;AF=0.0048
hxb2_pol	1610	.	a	g	7.000000000000000000000000	q30	DP=1411;AC=5;AF=0.0035
hxb2_pol	1612	.	a	c	4.000000000000000000000000	q30;ac5	DP=1453;AC=4;AF=0.0028
hxb2_pol	1613	.	c	a	4.000000000000000000000000	q30;ac5	DP=1441;AC=4;AF=0.0028
hxb2_pol	1614	.	c	t	14.00000000000000000000000	q30	DP=1454;AC=7;AF=0.0048
hxb2_pol	1615	.	t	c	2.000000000000000000000000	q30;ac5	DP=1443;AC=3;AF=0.0021
hxb2_pol	1616	.	t	c	2.000000000000000000000000	q30;ac5	DP=1456;AC=3;AF=0.0021
hxb2_pol	1617	.	c	t	18.00000000000000000000000	q30	DP=1456;AC=8;AF=0.0055
hxb2_pol	1618	.	t	a	2.000000000000000000000000	q30;ac5	DP=1455;AC=3;AF=0.0021
hxb2_pol	1618	.	t	c	2.000000000000000000000000	q30;ac5	DP=1455;AC=3;AF=0.0021
hxb2_pol	1619	.	a	t	4.000000000000000000000000	q30;ac5	DP=1457;AC=4;AF=0.0027
hxb2_pol	1624	.	g	a	4.000000000000000000000000	q30;ac5	DP=1444;AC=4;AF=0.0028
hxb2_pol	1625	.	a	g	2.000000000000000000000000	q30;ac5	DP=1447;AC=3;AF=0.0021
hxb2_pol	1626	.	t	a	2.000000000000000000000000	q30;ac5	DP=1447;AC=3;AF=0.0021
hxb2_pol	1627	.	g	t	4.000000000000000000000000	q30;ac5	DP=1381;AC=4;AF=0.0029
hxb2_pol	1630	.	g	c	4.000000000000000000000000	q30;ac5	DP=1442;AC=4;AF=0.0028
hxb2_pol	1631	.	c	a	4.000000000000000000000000	q30;ac5	DP=1438;AC=4;AF=0.0028
hxb2_pol	1632	.	a	g	4.000000000000000000000000	q30;ac5	DP=1441;AC=4;AF=0.0028
hxb2_pol	1633	.	g	c	2.000000000000000000000000	q30;ac5	DP=1439;AC=3;AF=0.0021
hxb2_pol	1638	.	c	a	4.000000000000000000000000	q30;ac5	DP=1439;AC=4;AF=0.0028
hxb2_pol	1640	.	g	a	2.000000000000000000000000	q30;ac5	DP=1396;AC=3;AF=0.0021
hxb2_pol	1643	.	a	g	2.000000000000000000000000	q30;ac5	DP=1428;AC=3;AF=0.0021
hxb2_pol	1644	.	g	a	4.000000000000000000000000	q30;ac5	DP=1425;AC=4;AF=0.0028
hxb2_pol	1645	.	a	g	2.000000000000000000000000	q30;ac5	DP=1426;AC=3;AF=0.0021
hxb2_pol	1646	.	c	a	4.000000000000000000000000	q30;ac5	DP=1427;AC=4;AF=0.0028
hxb2_pol	1647	.	t	c	2.000000000000000000000000	q30;ac5	DP=1420;AC=3;AF=0.0021
hxb2_pol	1648	.	a	t	1.000000000000000000000000	q30;ac5	DP=1390;AC=2;AF=0.0014
hxb2_pol	1650	.	a	t	4.000000000000000000000000	q30;ac5	DP=1410;AC=4;AF=0.0028
hxb2_pol	1651	.	t	a	2.000000000000000000000000	q30;ac5	DP=1387;AC=3;AF=0.0022
hxb2_pol	1652	.	t	a	1.000000000000000000000000	q30;ac5	DP=1397;AC=2;AF=0.0014
hxb2_pol	1653	.	a	g	1.000000000000000000000000	q30;ac5	DP=1391;AC=2;AF=0.0014
hxb2_pol	1653	.	a	t	1.000000000000000000000000	q30;ac5	DP=1391;AC=2;AF=0.0014
hxb2_pol	1654	.	g	a	1.000000000000000000000000	q30;ac5	DP=1387;AC=2;AF=0.0014
hxb2_pol	1655	.	g	a	4.000000000000000000000000	q30;ac5	DP=1393;AC=4;AF=0.0029
hxb2_pol	1656	.	a	g	2.000000000000000000000000	q30;ac5	DP=1331;AC=3;AF=0.0023
hxb2_pol	1659	.	a	g	1.000000000000000000000000	q30;ac5	DP=1399;AC=2;AF=0.0014
hxb2_pol	1660	.	g	a	1.000000000000000000000000	q30;ac5	DP=1406;AC=2;AF=0.0014
hxb2_pol	1661	.	c	g	1.000000000000000000000000	q30;ac5	DP=1405;AC=2;AF=0.0014
hxb2_pol	1662	.	a	c	1.000000000000000000000000	q30;ac5	DP=1407;AC=2;AF=0.0014
hxb2_pol	1663	.	g	a	2.000000000000000000000000	q30;ac5	DP=1399;AC=3;AF=0.0021
hxb2_pol	1669	.	g	t	1.000000000000000000000000	q30;ac5	DP=1402;AC=2;AF=0.0014
hxb2_pol	1673	.	c	t	1.000000000000000000000000	q30;ac5	DP=1404;AC=2;AF=0.0014
hxb2_pol	1680	.	a	g	2.000000000000000000000000	q30;ac5	DP=1404;AC=3;AF=0.0021
hxb2_pol	1682	.	g	a	2.000000000000000000000000	q30;ac5	DP=1404;AC=3;AF=0.0021
hxb2_pol	1683	.	a	g	2.000000000000000000000000	q30;ac5	DP=1386;AC=3;AF=0.0022
hxb2_pol	1685	.	g	a	4.000000000000000000000000	q30;ac5	DP=1379;AC=4;AF=0.0029
hxb2_pol	1686	.	a	g	11.00000000000000000000000	q30	DP=1375;AC=6;AF=0.0044
hxb2_pol	1687	.	c	a	7.000000000000000000000000	q30	DP=1362;AC=5;AF=0.0037
hxb2_pol	1688	.	a	c	12.00000000000000000000000	q30	DP=1265;AC=6;AF=0.0047
hxb2_pol	1692	.	a	g	7.000000000000000000000000	q30	DP=1361;AC=5;AF=0.0037
hxb2_pol	1693	.	g	a	4.000000000000000000000000	q30;ac5	DP=1362;AC=4;AF=0.0029
hxb2_pol	1693	.	g	t	11.00000000000000000000000	q30	DP=1362;AC=6;AF=0.0044
hxb2_pol	1694	.	t	g	15.00000000000000000000000	q30	DP=1361;AC=7;AF=0.0051
hxb2_pol	1695	.	t	g	11.00000000000000000000000	q30	DP=1368;AC=6;AF=0.0044
hxb2_pol	1696	.	g	t	25.00000000000000000000000	q30	DP=1370;AC=9;AF=0.0066
hxb2_pol	1697	.	t	c	11.00000000000000000000000	q30	DP=1377;AC=6;AF=0.0044
hxb2_pol	1697	.	t	g	4.000000000000000000000000	q30;ac5	DP=1377;AC=4;AF=0.0029
hxb2_pol	1698	.	c	a	11.00000000000000000000000	q30	DP=1384;AC=6;AF=0.0043
hxb2_pol	1698	.	c	t	7.000000000000000000000000	q30	DP=1384;AC=5;AF=0.0036
hxb2_pol	1699	.	a	c	30.00000000000000000000000	PASS	DP=1380;AC=10;AF=0.0072
hxb2_pol	1700	.	c	a	7.000000000000000000000000	q30	DP=1354;AC=5;AF=0.0037
hxb2_pol	1702	.	c	t	4.000000000000000000000000	q30;ac5	DP=1385;AC=4;AF=0.0029
hxb2_pol	1703	.	t	a	11.00000000000000000000000	q30	DP=1379;AC=6;AF=0.0044
hxb2_pol	1703	.	t	c	2.000000000000000000000000	q30;ac5	DP=1379;AC=3;AF=0.0022
hxb2_pol	1704	.	a	t	4.000000000000000000000000	q30;ac5	DP=1373;AC=4;AF=0.0029
hxb2_pol	1705	.	a	c	1.000000000000000000000000	q30;ac5	DP=1388;AC=2;AF=0.0014
hxb2_pol	1706	.	c	a	1.000000000000000000000000	q30;ac5	DP=1388;AC=2;AF=0.0014
hxb2_pol	1711	.	a	c	1.000000000000000000000000	q30;ac5	DP=1392;AC=2;AF=0.0014
hxb2_pol	1712	.	c	a	2.000000000000000000000000	q30;ac5	DP=1393;AC=3;AF=0.0022
hxb2_pol	1713	.	a	c	1.000000000000000000000000	q30;ac5	DP=1384;AC=2;AF=0.0014
hxb2_pol	1714	.	a	c	2.000000000000000000000000	q30;ac5	DP=1396;AC=3;AF=0.0021
hxb2_pol	1715	.	c	a	11.00000000000000000000000	q30	DP=1396;AC=6;AF=0.0043
hxb2_pol	1718	.	a	t	4.000000000000000000000000	q30;ac5	DP=1396;AC=4;AF=0.0029
hxb2_pol	1719	.	t	c	7.000000000000000000000000	q30	DP=1391;AC=5;AF=0.0036
hxb2_pol	1720	.	c	a	2.000000000000000000000000	q30;ac5	DP=1392;AC=3;AF=0.0022
hxb2_pol	1721	.	a	g	1.000000000000000000000000	q30;ac5	DP=1391;AC=2;AF=0.0014
hxb2_pol	1722	.	g	a	4.000000000000000000000000	q30;ac5	DP=1389;AC=4;AF=0.0029
hxb2_pol	1733	.	t	a	1.000000000000000000000000	q30;ac5	DP=1388;AC=2;AF=0.0014
hxb2_pol	1734	.	a	c	2.000000000000000000000000	q30;ac5	DP=1386;AC=3;AF=0.0022
hxb2_pol	1734	.	a	t	7.000000000000000000000000	q30	DP=1386;AC=5;AF=0.0036
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hxb2_pol	1744	.	t	a	1.000000000000000000000000	q30;ac5	DP=1387;AC=2;AF=0.0014
hxb2_pol	1752	.	t	c	1.000000000000000000000000	q30;ac5	DP=1340;AC=2;AF=0.0015
hxb2_pol	1754	.	t	g	2.000000000000000000000000	q30;ac5	DP=1372;AC=3;AF=0.0022
hxb2_pol	1755	.	g	c	1.000000000000000000000000	q30;ac5	DP=1372;AC=2;AF=0.0015
hxb2_pol	1755	.	g	t	4.000000000000000000000000	q30;ac5	DP=1372;AC=4;AF=0.0029
hxb2_pol	1756	.	c	g	2.000000000000000000000000	q30;ac5	DP=1372;AC=3;AF=0.0022
hxb2_pol	1757	.	a	c	4.000000000000000000000000	q30;ac5	DP=1372;AC=4;AF=0.0029
hxb2_pol	1758	.	g	a	4.000000000000000000000000	q30;ac5	DP=1359;AC=4;AF=0.0029
hxb2_pol	1759	.	g	a	2.000000000000000000000000	q30;ac5	DP=1372;AC=3;AF=0.0022
hxb2_pol	1760	.	a	g	2.000000000000000000000000	q30;ac5	DP=1369;AC=3;AF=0.0022
hxb2_pol	1760	.	a	t	2.000000000000000000000000	q30;ac5	DP=1369;AC=3;AF=0.0022
hxb2_pol	1761	.	t	a	4.000000000000000000000000	q30;ac5	DP=1353;AC=4;AF=0.0030
hxb2_pol	1762	.	t	c	1.000000000000000000000000	q30;ac5	DP=1365;AC=2;AF=0.0015
hxb2_pol	1763	.	c	g	2.000000000000000000000000	q30;ac5	DP=1361;AC=3;AF=0.0022
hxb2_pol	1763	.	c	t	2.000000000000000000000000	q30;ac5	DP=1361;AC=3;AF=0.0022
hxb2_pol	1764	.	g	c	2.000000000000000000000000	q30;ac5	DP=1329;AC=3;AF=0.0023
hxb2_pol	1766	.	g	a	4.000000000000000000000000	q30;ac5	DP=1362;AC=4;AF=0.0029
hxb2_pol	1767	.	a	g	2.000000000000000000000000	q30;ac5	DP=1363;AC=3;AF=0.0022
hxb2_pol	1767	.	a	t	2.000000000000000000000000	q30;ac5	DP=1363;AC=3;AF=0.0022
hxb2_pol	1768	.	t	a	4.000000000000000000000000	q30;ac5	DP=1352;AC=4;AF=0.0030
hxb2_pol	1769	.	t	a	7.000000000000000000000000	q30	DP=1366;AC=5;AF=0.0037
hxb2_pol	1770	.	a	g	4.000000000000000000000000	q30;ac5	DP=1361;AC=4;AF=0.0029
hxb2_pol	1770	.	a	t	1.000000000000000000000000	q30;ac5	DP=1361;AC=2;AF=0.0015
hxb2_pol	1771	.	g	a	20.00000000000000000000000	q30	DP=1360;AC=8;AF=0.0059
hxb2_pol	1773	.	a	g	4.000000000000000000000000	q30;ac5	DP=1360;AC=4;AF=0.0029
hxb2_pol	1774	.	g	t	2.000000000000000000000000	q30;ac5	DP=1358;AC=3;AF=0.0022
hxb2_pol	1775	.	t	a	2.000000000000000000000000	q30;ac5	DP=1352;AC=3;AF=0.0022
hxb2_pol	1775	.	t	g	1.000000000000000000000000	q30;ac5	DP=1352;AC=2;AF=0.0015
hxb2_pol	1776	.	a	t	2.000000000000000000000000	q30;ac5	DP=1333;AC=3;AF=0.0023
hxb2_pol	1778	.	a	c	7.000000000000000000000000	q30	DP=1357;AC=5;AF=0.0037
hxb2_pol	1779	.	c	a	11.00000000000000000000000	q30	DP=1350;AC=6;AF=0.0044
hxb2_pol	1780	.	a	c	2.000000000000000000000000	q30;ac5	DP=1359;AC=3;AF=0.0022
hxb2_pol	1780	.	a	t	1.000000000000000000000000	q30;ac5	DP=1359;AC=2;AF=0.0015
hxb2_pol	1781	.	t	a	7.000000000000000000000000	q30	DP=1356;AC=5;AF=0.0037
hxb2_pol	1782	.	a	g	1.000000000000000000000000	q30;ac5	DP=1352;AC=2;AF=0.0015
hxb2_pol	1782	.	a	t	1.000000000000000000000000	q30;ac5	DP=1352;AC=2;AF=0.0015
hxb2_pol	1783	.	g	a	1.000000000000000000000000	q30;ac5	DP=1354;AC=2;AF=0.0015
hxb2_pol	1783	.	g	t	1.000000000000000000000000	q30;ac5	DP=1354;AC=2;AF=0.0015
hxb2_pol	1784	.	t	a	1.000000000000000000000000	q30;ac5	DP=1354;AC=2;AF=0.0015
hxb2_pol	1786	.	a	c	1.000000000000000000000000	q30;ac5	DP=1356;AC=2;AF=0.0015
hxb2_pol	1787	.	c	a	1.000000000000000000000000	q30;ac5	DP=1356;AC=2;AF=0.0015
hxb2_pol	1790	.	a	c	1.000000000000000000000000	q30;ac5	DP=1349;AC=2;AF=0.0015
hxb2_pol	1791	.	c	t	2.000000000000000000000000	q30;ac5	DP=1349;AC=3;AF=0.0022
hxb2_pol	1792	.	t	c	8.000000000000000000000000	q30	DP=1349;AC=5;AF=0.0037
hxb2_pol	1793	.	c	a	2.000000000000000000000000	q30;ac5	DP=1352;AC=3;AF=0.0022
hxb2_pol	1793	.	c	t	1.000000000000000000000000	q30;ac5	DP=1352;AC=2;AF=0.0015
hxb2_pol	1794	.	a	c	5.000000000000000000000000	q30;ac5	DP=1350;AC=4;AF=0.0030
hxb2_pol	1795	.	c	a	11.00000000000000000000000	q30	DP=1346;AC=6;AF=0.0045
hxb2_pol	1796	.	a	c	1.000000000000000000000000	q30;ac5	DP=1330;AC=2;AF=0.0015
hxb2_pol	1797	.	a	t	1.000000000000000000000000	q30;ac5	DP=1352;AC=2;AF=0.0015
hxb2_pol	1798	.	t	a	5.000000000000000000000000	q30;ac5	DP=1344;AC=4;AF=0.0030
hxb2_pol	1799	.	a	t	2.000000000000000000000000	q30;ac5	DP=1347;AC=3;AF=0.0022
hxb2_pol	1801	.	g	t	1.000000000000000000000000	q30;ac5	DP=1340;AC=2;AF=0.0015
hxb2_pol	1802	.	c	g	1.000000000000000000000000	q30;ac5	DP=1337;AC=2;AF=0.0015
hxb2_pol	1803	.	a	c	1.000000000000000000000000	q30;ac5	DP=1334;AC=2;AF=0.0015
hxb2_pol	1804	.	t	a	1.000000000000000000000000	q30;ac5	DP=1323;AC=2;AF=0.0015
hxb2_pol	1805	.	t	a	2.000000000000000000000000	q30;ac5	DP=1332;AC=3;AF=0.0023
hxb2_pol	1806	.	a	g	2.000000000000000000000000	q30;ac5	DP=1328;AC=3;AF=0.0023
hxb2_pol	1806	.	a	t	2.000000000000000000000000	q30;ac5	DP=1328;AC=3;AF=0.0023
hxb2_pol	1807	.	g	a	1.000000000000000000000000	q30;ac5	DP=1316;AC=2;AF=0.0015
hxb2_pol	1808	.	g	a	2.000000000000000000000000	q30;ac5	DP=1327;AC=3;AF=0.0023
hxb2_pol	1809	.	a	g	2.000000000000000000000000	q30;ac5	DP=1311;AC=3;AF=0.0023
hxb2_pol	1810	.	a	t	8.000000000000000000000000	q30	DP=1325;AC=5;AF=0.0038
hxb2_pol	1811	.	t	a	2.000000000000000000000000	q30;ac5	DP=1324;AC=3;AF=0.0023
hxb2_pol	1811	.	t	c	8.000000000000000000000000	q30	DP=1324;AC=5;AF=0.0038
hxb2_pol	1812	.	c	a	2.000000000000000000000000	q30;ac5	DP=1326;AC=3;AF=0.0023
hxb2_pol	1812	.	c	t	2.000000000000000000000000	q30;ac5	DP=1326;AC=3;AF=0.0023
hxb2_pol	1813	.	a	c	2.000000000000000000000000	q30;ac5	DP=1325;AC=3;AF=0.0023
hxb2_pol	1813	.	a	t	1.000000000000000000000000	q30;ac5	DP=1325;AC=2;AF=0.0015
hxb2_pol	1814	.	t	a	5.000000000000000000000000	q30;ac5	DP=1304;AC=4;AF=0.0031
hxb2_pol	1815	.	t	c	5.000000000000000000000000	q30;ac5	DP=1320;AC=4;AF=0.0030
hxb2_pol	1816	.	c	a	5.000000000000000000000000	q30;ac5	DP=1319;AC=4;AF=0.0030
hxb2_pol	1817	.	a	c	2.000000000000000000000000	q30;ac5	DP=1300;AC=3;AF=0.0023
hxb2_pol	1818	.	a	g	5.000000000000000000000000	q30;ac5	DP=1319;AC=4;AF=0.0030
hxb2_pol	1819	.	g	a	8.000000000000000000000000	q30	DP=1318;AC=5;AF=0.0038
hxb2_pol	1819	.	g	c	8.000000000000000000000000	q30	DP=1318;AC=5;AF=0.0038
hxb2_pol	1820	.	c	a	2.000000000000000000000000	q30;ac5	DP=1315;AC=3;AF=0.0023
hxb2_pol	1820	.	c	g	8.000000000000000000000000	q30	DP=1315;AC=5;AF=0.0038
hxb2_pol	1821	.	a	c	38.00000000000000000000000	PASS	DP=1312;AC=11;AF=0.0084
hxb2_pol	1822	.	c	a	26.00000000000000000000000	q30	DP=1305;AC=9;AF=0.0069
hxb2_pol	1823	.	a	c	12.00000000000000000000000	q30	DP=1300;AC=6;AF=0.0046
hxb2_pol	1825	.	c	a	8.000000000000000000000000	q30	DP=1293;AC=5;AF=0.0039
hxb2_pol	1828	.	g	a	5.000000000000000000000000	q30;ac5	DP=1303;AC=4;AF=0.0031
hxb2_pol	1832	.	a	c	5.000000000000000000000000	q30;ac5	DP=1268;AC=4;AF=0.0032
hxb2_pol	1835	.	g	a	1.000000000000000000000000	q30;ac5	DP=1286;AC=2;AF=0.0016
hxb2_pol	1835	.	g	t	2.000000000000000000000000	q30;ac5	DP=1286;AC=3;AF=0.0023
hxb2_pol	1836	.	t	g	8.000000000000000000000000	q30	DP=1283;AC=5;AF=0.0039
hxb2_pol	1837	.	g	t	2.000000000000000000000000	q30;ac5	DP=1290;AC=3;AF=0.0023
hxb2_pol	1838	.	a	g	3.000000000000000000000000	q30;ac5	DP=1275;AC=3;AF=0.0024
hxb2_pol	1839	.	a	t	5.000000000000000000000000	q30;ac5	DP=1286;AC=4;AF=0.0031
hxb2_pol	1840	.	t	a	1.000000000000000000000000	q30;ac5	DP=1288;AC=2;AF=0.0016
hxb2_pol	1840	.	t	c	5.000000000000000000000000	q30;ac5	DP=1288;AC=4;AF=0.0031
hxb2_pol	1841	.	c	a	5.000000000000000000000000	q30;ac5	DP=1288;AC=4;AF=0.0031
hxb2_pol	1841	.	c	t	2.000000000000000000000000	q30;ac5	DP=1288;AC=3;AF=0.0023
hxb2_pol	1842	.	a	c	8.000000000000000000000000	q30	DP=1288;AC=5;AF=0.0039
hxb2_pol	1842	.	a	g	2.000000000000000000000000	q30;ac5	DP=1288;AC=3;AF=0.0023
hxb2_pol	1843	.	g	a	16.00000000000000000000000	q30	DP=1285;AC=7;AF=0.0054
hxb2_pol	1844	.	a	g	12.00000000000000000000000	q30	DP=1285;AC=6;AF=0.0047
hxb2_pol	1845	.	g	a	2.000000000000000000000000	q30;ac5	DP=1280;AC=3;AF=0.0023
hxb2_pol	1845	.	g	t	1.000000000000000000000000	q30;ac5	DP=1280;AC=2;AF=0.0016
hxb2_pol	1853	.	a	t	1.000000000000000000000000	q30	DP=3009;AC=5;AF=0.0017
hxb2_pol	1854	.	t	c	2.000000000000000000000000	q30	DP=3002;AC=6;AF=0.0020
hxb2_pol	1856	.	a	c	2.000000000000000000000000	q30	DP=2978;AC=6;AF=0.0020
hxb2_pol	1880	.	a	g	8.000000000000000000000000	q30	DP=2387;AC=8;AF=0.0034
hxb2_pol	1882	.	g	a	18.00000000000000000000000	q30	DP=2386;AC=11;AF=0.0046
hxb2_pol	1883	.	a	g	6.000000000000000000000000	q30	DP=2344;AC=7;AF=0.0030
hxb2_pol	1917	.	a	g	4.000000000000000000000000	q30	DP=2780;AC=7;AF=0.0025
hxb2_pol	1918	.	g	a	2.000000000000000000000000	q30	DP=2773;AC=6;AF=0.0022
hxb2_pol	1919	.	g	a	6.000000000000000000000000	q30	DP=2779;AC=8;AF=0.0029
hxb2_pol	1920	.	a	g	6.000000000000000000000000	q30	DP=2767;AC=8;AF=0.0029
hxb2_pol	1921	.	a	t	6.000000000000000000000000	q30	DP=2781;AC=8;AF=0.0029
hxb2_pol	1922	.	t	a	11.00000000000000000000000	q30	DP=2768;AC=10;AF=0.0036
hxb2_pol	1923	.	t	g	2.000000000000000000000000	q30	DP=2778;AC=6;AF=0.0022
hxb2_pol	1924	.	g	t	4.000000000000000000000000	q30	DP=2759;AC=7;AF=0.0025
hxb2_pol	1925	.	g	a	2.000000000000000000000000	q30	DP=2784;AC=6;AF=0.0022
hxb2_pol	1926	.	a	g	17.00000000000000000000000	q30	DP=2782;AC=12;AF=0.0043
hxb2_pol	1927	.	g	a	6.000000000000000000000000	q30	DP=2776;AC=8;AF=0.0029
hxb2_pol	1929	.	a	g	4.000000000000000000000000	q30	DP=2744;AC=7;AF=0.0026
hxb2_pol	1933	.	g	a	1.000000000000000000000000	q30	DP=2787;AC=5;AF=0.0018
hxb2_pol	1944	.	t	a	1.000000000000000000000000	q30	DP=2790;AC=5;AF=0.0018
hxb2_pol	1949	.	t	a	1.000000000000000000000000	q30	DP=2787;AC=5;AF=0.0018
hxb2_pol	1972	.	g	a	4.000000000000000000000000	q30	DP=2765;AC=7;AF=0.0025
hxb2_pol	1973	.	t	g	4.000000000000000000000000	q30	DP=2767;AC=7;AF=0.0025
hxb2_pol	1974	.	a	t	2.000000000000000000000000	q30	DP=2768;AC=6;AF=0.0022
hxb2_pol	1975	.	c	a	1.000000000000000000000000	q30	DP=2766;AC=5;AF=0.0018
hxb2_pol	1976	.	t	c	1.000000000000000000000000	q30	DP=2767;AC=5;AF=0.0018
hxb2_pol	1977	.	a	t	2.000000000000000000000000	q30	DP=2763;AC=6;AF=0.0022
hxb2_pol	1978	.	t	a	1.000000000000000000000000	q30;ac5	DP=2564;AC=4;AF=0.0016
hxb2_pol	1982	.	t	a	4.000000000000000000000000	q30	DP=2758;AC=7;AF=0.0025
hxb2_pol	1983	.	a	g	2.000000000000000000000000	q30	DP=2759;AC=6;AF=0.0022
hxb2_pol	1984	.	g	a	8.000000000000000000000000	q30	DP=2764;AC=9;AF=0.0033
hxb2_pol	1985	.	a	t	1.000000000000000000000000	q30	DP=2770;AC=5;AF=0.0018
hxb2_pol	1986	.	t	g	1.000000000000000000000000	q30	DP=2776;AC=5;AF=0.0018
hxb2_pol	1988	.	g	a	1.000000000000000000000000	q30	DP=2785;AC=5;AF=0.0018
hxb2_pol	1990	.	a	t	2.000000000000000000000000	q30	DP=2787;AC=6;AF=0.0022
hxb2_pol	1991	.	t	a	2.000000000000000000000000	q30	DP=2786;AC=6;AF=0.0022
hxb2_pol	1998	.	g	a	1.000000000000000000000000	q30	DP=2779;AC=5;AF=0.0018
hxb2_pol	2000	.	c	g	1.000000000000000000000000	q30	DP=2737;AC=5;AF=0.0018
hxb2_pol	2003	.	a	c	2.000000000000000000000000	q30	DP=2769;AC=6;AF=0.0022
hxb2_pol	2005	.	g	a	2.000000000000000000000000	q30	DP=2786;AC=6;AF=0.0022
hxb2_pol	2011	.	c	a	1.000000000000000000000000	q30	DP=2789;AC=5;AF=0.0018
hxb2_pol	2028	.	t	a	1.000000000000000000000000	q30	DP=2768;AC=5;AF=0.0018
hxb2_pol	2029	.	a	t	1.000000000000000000000000	q30	DP=2763;AC=5;AF=0.0018
hxb2_pol	2031	.	t	a	1.000000000000000000000000	q30	DP=2754;AC=5;AF=0.0018
hxb2_pol	2052	.	t	a	1.000000000000000000000000	q30;ac5	DP=2588;AC=4;AF=0.0015
hxb2_pol	2055	.	t	a	6.000000000000000000000000	q30	DP=2716;AC=8;AF=0.0029
hxb2_pol	2056	.	a	t	6.000000000000000000000000	q30	DP=2691;AC=8;AF=0.0030
hxb2_pol	2057	.	a	c	9.000000000000000000000000	q30	DP=2715;AC=9;AF=0.0033
hxb2_pol	2058	.	c	a	9.000000000000000000000000	q30	DP=2700;AC=9;AF=0.0033
hxb2_pol	2059	.	c	t	15.00000000000000000000000	q30	DP=2715;AC=11;AF=0.0041
hxb2_pol	2060	.	t	g	14.00000000000000000000000	q30	DP=2720;AC=11;AF=0.0040
hxb2_pol	2061	.	g	c	6.000000000000000000000000	q30	DP=2723;AC=8;AF=0.0029
hxb2_pol	2063	.	c	a	1.000000000000000000000000	q30	DP=2723;AC=5;AF=0.0018
hxb2_pol	2064	.	a	c	6.000000000000000000000000	q30	DP=2721;AC=8;AF=0.0029
hxb2_pol	2072	.	t	a	2.000000000000000000000000	q30	DP=2717;AC=6;AF=0.0022
hxb2_pol	2076	.	a	c	1.000000000000000000000000	q30;ac5	DP=2551;AC=4;AF=0.0016
hxb2_pol	2079	.	a	g	12.00000000000000000000000	q30	DP=2674;AC=10;AF=0.0037
hxb2_pol	2080	.	g	a	46.00000000000000000000000	PASS	DP=2668;AC=18;AF=0.0067
hxb2_pol	2081	.	a	g	19.00000000000000000000000	q30	DP=2614;AC=12;AF=0.0046
hxb2_pol	2083	.	a	t	3.000000000000000000000000	q30	DP=2675;AC=6;AF=0.0022
hxb2_pol	2084	.	t	a	22.00000000000000000000000	q30	DP=2676;AC=13;AF=0.0049
hxb2_pol	2085	.	a	g	3.000000000000000000000000	q30	DP=2690;AC=6;AF=0.0022
hxb2_pol	2085	.	a	t	4.000000000000000000000000	q30	DP=2690;AC=7;AF=0.0026
hxb2_pol	2086	.	g	a	3.000000000000000000000000	q30	DP=2692;AC=6;AF=0.0022
hxb2_pol	2086	.	g	t	1.000000000000000000000000	q30	DP=2692;AC=5;AF=0.0019
hxb2_pol	2087	.	t	a	1.000000000000000000000000	q30	DP=2693;AC=5;AF=0.0019
hxb2_pol	2088	.	a	g	1.000000000000000000000000	q30	DP=2690;AC=5;AF=0.0019
hxb2_pol	2103	.	a	t	1.000000000000000000000000	q30	DP=2683;AC=5;AF=0.0019
hxb2_pol	2104	.	t	g	1.000000000000000000000000	q30	DP=2680;AC=5;AF=0.0019
hxb2_pol	2105	.	g	t	6.000000000000000000000000	q30	DP=2675;AC=8;AF=0.0030
hxb2_pol	2106	.	t	c	1.000000000000000000000000	q30	DP=2668;AC=5;AF=0.0019
hxb2_pol	2111	.	t	c	3.000000000000000000000000	q30	DP=2653;AC=6;AF=0.0023
hxb2_pol	2112	.	a	t	7.000000000000000000000000	q30	DP=2527;AC=8;AF=0.0032
hxb2_pol	2115	.	a	g	7.000000000000000000000000	q30	DP=2649;AC=8;AF=0.0030
hxb2_pol	2116	.	g	a	19.00000000000000000000000	q30	DP=2618;AC=12;AF=0.0046
hxb2_pol	2117	.	g	a	9.000000000000000000000000	q30	DP=2650;AC=9;AF=0.0034
hxb2_pol	2118	.	a	g	69.00000000000000000000000	PASS	DP=2645;AC=22;AF=0.0083
hxb2_pol	2119	.	g	a	69.00000000000000000000000	PASS	DP=2644;AC=22;AF=0.0083
hxb2_pol	2120	.	a	g	9.000000000000000000000000	q30	DP=2615;AC=9;AF=0.0034
hxb2_pol	2121	.	a	g	3.000000000000000000000000	q30	DP=2658;AC=6;AF=0.0023
hxb2_pol	2122	.	g	a	3.000000000000000000000000	q30	DP=2661;AC=6;AF=0.0023
hxb2_pol	2122	.	g	c	1.000000000000000000000000	q30	DP=2661;AC=5;AF=0.0019
hxb2_pol	2123	.	c	g	7.000000000000000000000000	q30	DP=2629;AC=8;AF=0.0030
hxb2_pol	2134	.	c	a	3.000000000000000000000000	q30	DP=2644;AC=6;AF=0.0023
hxb2_pol	2149	.	c	t	1.000000000000000000000000	q30;ac5	DP=2587;AC=4;AF=0.0015
hxb2_pol	2150	.	c	a	7.000000000000000000000000	q30	DP=2615;AC=8;AF=0.0031
hxb2_pol	2151	.	a	g	7.000000000000000000000000	q30	DP=2615;AC=8;AF=0.0031
hxb2_pol	2152	.	g	a	1.000000000000000000000000	q30;ac5	DP=2583;AC=4;AF=0.0015
hxb2_pol	2153	.	g	a	3.000000000000000000000000	q30	DP=2610;AC=6;AF=0.0023
hxb2_pol	2154	.	a	g	5.000000000000000000000000	q30	DP=2574;AC=7;AF=0.0027
hxb2_pol	2155	.	a	t	12.00000000000000000000000	q30	DP=2606;AC=10;AF=0.0038
hxb2_pol	2156	.	t	a	42.00000000000000000000000	PASS	DP=2598;AC=17;AF=0.0065
hxb2_pol	2157	.	a	t	28.00000000000000000000000	q30	DP=2593;AC=14;AF=0.0054
hxb2_pol	2158	.	t	a	3.000000000000000000000000	q30	DP=2602;AC=6;AF=0.0023
hxb2_pol	2158	.	t	g	7.000000000000000000000000	q30	DP=2602;AC=8;AF=0.0031
hxb2_pol	2159	.	g	t	5.000000000000000000000000	q30	DP=2557;AC=7;AF=0.0027
hxb2_pol	2160	.	g	c	3.000000000000000000000000	q30	DP=2596;AC=6;AF=0.0023
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hxb2_pol	2161	.	c	g	1.000000000000000000000000	q30	DP=2595;AC=5;AF=0.0019
hxb2_pol	2162	.	a	c	7.000000000000000000000000	q30	DP=2566;AC=8;AF=0.0031
hxb2_pol	2163	.	a	c	5.000000000000000000000000	q30	DP=2591;AC=7;AF=0.0027
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hxb2_pol	2164	.	c	t	7.000000000000000000000000	q30	DP=2578;AC=8;AF=0.0031
hxb2_pol	2165	.	t	a	5.000000000000000000000000	q30	DP=2576;AC=7;AF=0.0027
hxb2_pol	2165	.	t	c	1.000000000000000000000000	q30;ac5	DP=2576;AC=4;AF=0.0016
hxb2_pol	2166	.	a	g	1.000000000000000000000000	q30;ac5	DP=2575;AC=4;AF=0.0016
hxb2_pol	2167	.	g	a	3.000000000000000000000000	q30	DP=2573;AC=6;AF=0.0023
hxb2_pol	2168	.	a	t	1.000000000000000000000000	q30;ac5	DP=2582;AC=4;AF=0.0015
hxb2_pol	2171	.	g	t	1.000000000000000000000000	q30;ac5	DP=2565;AC=4;AF=0.0016
hxb2_pol	2174	.	c	a	1.000000000000000000000000	q30;ac5	DP=2560;AC=4;AF=0.0016
hxb2_pol	2175	.	a	c	3.000000000000000000000000	q30	DP=2553;AC=6;AF=0.0024
hxb2_pol	2176	.	c	a	1.000000000000000000000000	q30;ac5	DP=2544;AC=4;AF=0.0016
hxb2_pol	2177	.	a	c	1.000000000000000000000000	q30;ac5	DP=2545;AC=4;AF=0.0016
hxb2_pol	2178	.	t	a	2.000000000000000000000000	q30	DP=2455;AC=5;AF=0.0020
hxb2_pol	2180	.	t	a	13.00000000000000000000000	q30	DP=2524;AC=10;AF=0.0040
hxb2_pol	2181	.	a	g	25.00000000000000000000000	q30	DP=2500;AC=13;AF=0.0052
hxb2_pol	2181	.	a	t	44.00000000000000000000000	PASS	DP=2500;AC=17;AF=0.0068
hxb2_pol	2182	.	g	a	100.0000000000000000000000	PASS	DP=2498;AC=34;AF=0.0136
hxb2_pol	2183	.	a	g	75.00000000000000000000000	PASS	DP=2448;AC=22;AF=0.0090
hxb2_pol	2184	.	a	g	45.00000000000000000000000	PASS	DP=2453;AC=17;AF=0.0069
hxb2_pol	2185	.	g	a	83.00000000000000000000000	PASS	DP=2403;AC=23;AF=0.0096
hxb2_pol	2186	.	g	a	96.00000000000000000000000	PASS	DP=2419;AC=25;AF=0.0103
hxb2_pol	2187	.	a	g	100	PASS	DP=2283;AC=25;AF=0.0110
hxb2_pol	2190	.	a	g	76.00000000000000000000000	PASS	DP=2411;AC=22;AF=0.0091
hxb2_pol	2191	.	g	a	52.00000000000000000000000	PASS	DP=2398;AC=18;AF=0.0075
hxb2_pol	2191	.	g	t	76.00000000000000000000000	PASS	DP=2398;AC=22;AF=0.0092
hxb2_pol	2192	.	t	g	47.00000000000000000000000	PASS	DP=2371;AC=17;AF=0.0072
hxb2_pol	2193	.	t	a	52.00000000000000000000000	PASS	DP=2406;AC=18;AF=0.0075
hxb2_pol	2194	.	a	t	100	PASS	DP=2401;AC=26;AF=0.0108
hxb2_pol	2195	.	t	a	8.000000000000000000000000	q30	DP=2409;AC=8;AF=0.0033
hxb2_pol	2195	.	t	c	46.00000000000000000000000	PASS	DP=2409;AC=17;AF=0.0071
hxb2_pol	2196	.	c	t	14.00000000000000000000000	q30	DP=2385;AC=10;AF=0.0042
hxb2_pol	2197	.	c	t	18.00000000000000000000000	q30	DP=2409;AC=11;AF=0.0046
hxb2_pol	2198	.	t	g	8.000000000000000000000000	q30	DP=2405;AC=8;AF=0.0033
hxb2_pol	2199	.	g	t	1.000000000000000000000000	q30;ac5	DP=2361;AC=4;AF=0.0017
hxb2_pol	2200	.	g	t	22.00000000000000000000000	q30	DP=2403;AC=12;AF=0.0050
hxb2_pol	2201	.	t	a	8.000000000000000000000000	q30	DP=2391;AC=8;AF=0.0033
hxb2_pol	2202	.	a	g	14.00000000000000000000000	q30	DP=2386;AC=10;AF=0.0042
hxb2_pol	2203	.	g	c	8.000000000000000000000000	q30	DP=2402;AC=8;AF=0.0033
hxb2_pol	2204	.	c	a	8.000000000000000000000000	q30	DP=2401;AC=8;AF=0.0033
hxb2_pol	2205	.	a	g	4.000000000000000000000000	q30	DP=2399;AC=6;AF=0.0025
hxb2_pol	2206	.	g	t	4.000000000000000000000000	q30	DP=2385;AC=6;AF=0.0025
hxb2_pol	2212	.	g	t	11.00000000000000000000000	q30	DP=2371;AC=9;AF=0.0038
hxb2_pol	2213	.	t	g	1.000000000000000000000000	q30;ac5	DP=2374;AC=4;AF=0.0017
hxb2_pol	2214	.	a	t	4.000000000000000000000000	q30	DP=2362;AC=6;AF=0.0025
hxb2_pol	2215	.	g	a	1.000000000000000000000000	q30;ac5	DP=2381;AC=4;AF=0.0017
hxb2_pol	2216	.	c	g	1.000000000000000000000000	q30;ac5	DP=2334;AC=4;AF=0.0017
hxb2_pol	2219	.	g	a	4.000000000000000000000000	q30	DP=2357;AC=6;AF=0.0025
hxb2_pol	2220	.	t	g	6.000000000000000000000000	q30	DP=2352;AC=7;AF=0.0030
hxb2_pol	2221	.	g	t	1.000000000000000000000000	q30;ac5	DP=2324;AC=4;AF=0.0017
hxb2_pol	2222	.	g	a	8.000000000000000000000000	q30	DP=2367;AC=8;AF=0.0034
hxb2_pol	2223	.	a	g	1.000000000000000000000000	q30;ac5	DP=2365;AC=4;AF=0.0017
hxb2_pol	2223	.	a	t	4.000000000000000000000000	q30	DP=2365;AC=6;AF=0.0025
hxb2_pol	2224	.	t	a	27.00000000000000000000000	q30	DP=2347;AC=13;AF=0.0055
hxb2_pol	2225	.	a	t	8.000000000000000000000000	q30	DP=2348;AC=8;AF=0.0034
hxb2_pol	2226	.	t	a	11.00000000000000000000000	q30	DP=2350;AC=9;AF=0.0038
hxb2_pol	2227	.	a	t	19.00000000000000000000000	q30	DP=2342;AC=11;AF=0.0047
hxb2_pol	2228	.	t	a	15.00000000000000000000000	q30	DP=2337;AC=10;AF=0.0043
hxb2_pol	2229	.	a	g	9.000000000000000000000000	q30	DP=2334;AC=8;AF=0.0034
hxb2_pol	2230	.	g	a	12.00000000000000000000000	q30	DP=2335;AC=9;AF=0.0039
hxb2_pol	2232	.	a	g	15.00000000000000000000000	q30	DP=2343;AC=10;AF=0.0043
hxb2_pol	2233	.	g	c	19.00000000000000000000000	q30	DP=2338;AC=11;AF=0.0047
hxb2_pol	2234	.	c	a	6.000000000000000000000000	q30	DP=2333;AC=7;AF=0.0030
hxb2_pol	2234	.	c	g	4.000000000000000000000000	q30	DP=2333;AC=6;AF=0.0026
hxb2_pol	2235	.	a	c	9.000000000000000000000000	q30	DP=2331;AC=8;AF=0.0034
hxb2_pol	2235	.	a	g	12.00000000000000000000000	q30	DP=2331;AC=9;AF=0.0039
hxb2_pol	2236	.	g	a	79.00000000000000000000000	PASS	DP=2313;AC=22;AF=0.0095
hxb2_pol	2237	.	a	g	23.00000000000000000000000	q30	DP=2287;AC=12;AF=0.0052
hxb2_pol	2238	.	a	g	23.00000000000000000000000	q30	DP=2317;AC=12;AF=0.0052
hxb2_pol	2239	.	g	a	54.00000000000000000000000	PASS	DP=2298;AC=18;AF=0.0078
hxb2_pol	2239	.	g	t	28.00000000000000000000000	q30	DP=2298;AC=13;AF=0.0057
hxb2_pol	2240	.	t	g	67.00000000000000000000000	PASS	DP=2274;AC=20;AF=0.0088
hxb2_pol	2241	.	t	a	9.000000000000000000000000	q30	DP=2290;AC=8;AF=0.0035
hxb2_pol	2242	.	a	t	81.00000000000000000000000	PASS	DP=2267;AC=22;AF=0.0097
hxb2_pol	2243	.	t	a	24.00000000000000000000000	q30	DP=2246;AC=12;AF=0.0053
hxb2_pol	2244	.	t	c	12.00000000000000000000000	q30	DP=2278;AC=9;AF=0.0040
hxb2_pol	2245	.	c	t	34.00000000000000000000000	PASS	DP=2237;AC=14;AF=0.0063
hxb2_pol	2246	.	c	a	12.00000000000000000000000	q30	DP=2268;AC=9;AF=0.0040
hxb2_pol	2247	.	a	g	6.000000000000000000000000	q30	DP=2260;AC=7;AF=0.0031
hxb2_pol	2248	.	g	a	1.000000000000000000000000	q30;ac5	DP=2249;AC=4;AF=0.0018
hxb2_pol	2249	.	c	g	2.000000000000000000000000	q30	DP=2243;AC=5;AF=0.0022
hxb2_pol	2250	.	a	c	7.000000000000000000000000	q30	DP=2225;AC=7;AF=0.0031
hxb2_pol	2250	.	a	g	1.000000000000000000000000	q30;ac5	DP=2225;AC=4;AF=0.0018
hxb2_pol	2251	.	g	a	91.00000000000000000000000	PASS	DP=2181;AC=23;AF=0.0105
hxb2_pol	2252	.	a	g	66.00000000000000000000000	PASS	DP=2088;AC=19;AF=0.0091
hxb2_pol	2254	.	a	c	17.00000000000000000000000	q30	DP=2121;AC=10;AF=0.0047
hxb2_pol	2255	.	c	a	100	PASS	DP=2094;AC=24;AF=0.0115
hxb2_pol	2256	.	a	c	37.00000000000000000000000	PASS	DP=2093;AC=14;AF=0.0067
hxb2_pol	2256	.	a	g	14.00000000000000000000000	q30	DP=2093;AC=9;AF=0.0043
hxb2_pol	2257	.	g	a	62.00000000000000000000000	PASS	DP=2019;AC=18;AF=0.0089
hxb2_pol	2259	.	g	c	19.00000000000000000000000	q30	DP=1987;AC=10;AF=0.0050
hxb2_pol	2260	.	c	a	19.00000000000000000000000	q30	DP=1977;AC=10;AF=0.0051
hxb2_pol	2260	.	c	g	8.000000000000000000000000	q30	DP=1977;AC=7;AF=0.0035
hxb2_pol	2261	.	a	c	19.00000000000000000000000	q30	DP=1973;AC=10;AF=0.0051
hxb2_pol	2261	.	a	g	19.00000000000000000000000	q30	DP=1973;AC=10;AF=0.0051
hxb2_pol	2262	.	g	a	20.00000000000000000000000	q30	DP=1954;AC=10;AF=0.0051
hxb2_pol	2263	.	g	a	100	PASS	DP=1960;AC=29;AF=0.0148
hxb2_pol	2264	.	a	g	100.0000000000000000000000	PASS	DP=1943;AC=32;AF=0.0165
hxb2_pol	2266	.	a	c	13.00000000000000000000000	q30	DP=1865;AC=8;AF=0.0043
hxb2_pol	2267	.	c	a	2.000000000000000000000000	q30;ac5	DP=1753;AC=4;AF=0.0023
hxb2_pol	2273	.	a	t	3.000000000000000000000000	q30;ac5	DP=1255;AC=3;AF=0.0024
hxb2_pol	2274	.	t	a	9.000000000000000000000000	q30;ac5	DP=894;AC=4;AF=0.0045
hxb2_pol	2277	.	t	c	9.000000000000000000000000	q30;ac5	DP=573;AC=3;AF=0.0052
hxb2_pol	2278	.	c	t	54.00000000000000000000000	PASS	DP=557;AC=9;AF=0.0162
hxb2_pol	2279	.	t	c	22.00000000000000000000000	q30	DP=534;AC=5;AF=0.0094
hxb2_pol	2282	.	t	a	29.00000000000000000000000	q30	DP=534;AC=6;AF=0.0112
hxb2_pol	2283	.	a	t	15.00000000000000000000000	q30;ac5	DP=532;AC=4;AF=0.0075
hxb2_pol	2286	.	a	t	8.000000000000000000000000	q30;ac5	DP=586;AC=3;AF=0.0051
hxb2_pol	2287	.	t	a	1.000000000000000000000000	q30;ac5	DP=592;AC=1;AF=0.0017
hxb2_pol	2288	.	t	a	8.000000000000000000000000	q30;ac5	DP=626;AC=3;AF=0.0048
hxb2_pol	2289	.	a	g	8.000000000000000000000000	q30;ac5	DP=646;AC=3;AF=0.0046
hxb2_pol	2290	.	g	c	8.000000000000000000000000	q30;ac5	DP=650;AC=3;AF=0.0046
hxb2_pol	2291	.	c	a	8.000000000000000000000000	q30;ac5	DP=649;AC=3;AF=0.0046
hxb2_pol	2292	.	a	g	4.000000000000000000000000	q30;ac5	DP=646;AC=2;AF=0.0031
hxb2_pol	2297	.	g	a	1.000000000000000000000000	q30;ac5	DP=639;AC=1;AF=0.0016
hxb2_pol	2298	.	a	g	1.000000000000000000000000	q30;ac5	DP=638;AC=1;AF=0.0016
hxb2_pol	2300	.	g	t	4.000000000000000000000000	q30;ac5	DP=631;AC=2;AF=0.0032
hxb2_pol	2302	.	c	g	4.000000000000000000000000	q30;ac5	DP=621;AC=2;AF=0.0032
hxb2_pol	2304	.	a	c	8.000000000000000000000000	q30;ac5	DP=609;AC=3;AF=0.0049
hxb2_pol	2305	.	g	a	8.000000000000000000000000	q30;ac5	DP=606;AC=3;AF=0.0050
hxb2_pol	2306	.	t	g	8.000000000000000000000000	q30;ac5	DP=603;AC=3;AF=0.0050
hxb2_pol	2307	.	a	t	4.000000000000000000000000	q30;ac5	DP=563;AC=2;AF=0.0036
hxb2_pol	2312	.	c	a	4.000000000000000000000000	q30;ac5	DP=597;AC=2;AF=0.0034
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hxb2_pol	2315	.	t	a	4.000000000000000000000000	q30;ac5	DP=603;AC=2;AF=0.0033
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hxb2_pol	2347	.	g	c	1.000000000000000000000000	q30;ac5	DP=553;AC=1;AF=0.0018
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hxb2_pol	2349	.	t	a	1.000000000000000000000000	q30;ac5	DP=549;AC=1;AF=0.0018
hxb2_pol	2350	.	a	c	1.000000000000000000000000	q30;ac5	DP=547;AC=1;AF=0.0018
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hxb2_pol	2355	.	t	a	1.000000000000000000000000	q30;ac5	DP=538;AC=1;AF=0.0019
hxb2_pol	2356	.	a	g	1.000000000000000000000000	q30;ac5	DP=535;AC=1;AF=0.0019
hxb2_pol	2356	.	a	t	1.000000000000000000000000	q30;ac5	DP=535;AC=1;AF=0.0019
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hxb2_pol	2359	.	g	c	1.000000000000000000000000	q30;ac5	DP=525;AC=1;AF=0.0019
hxb2_pol	2365	.	t	c	1.000000000000000000000000	q30;ac5	DP=507;AC=1;AF=0.0020
hxb2_pol	2366	.	g	t	1.000000000000000000000000	q30;ac5	DP=506;AC=1;AF=0.0020
hxb2_pol	2367	.	t	g	1.000000000000000000000000	q30;ac5	DP=502;AC=1;AF=0.0020
hxb2_pol	2369	.	g	t	1.000000000000000000000000	q30;ac5	DP=500;AC=1;AF=0.0020
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hxb2_pol	2391	.	a	t	5.000000000000000000000000	q30;ac5	DP=468;AC=2;AF=0.0043
hxb2_pol	2394	.	t	g	2.000000000000000000000000	q30;ac5	DP=462;AC=1;AF=0.0022
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hxb2_pol	2410	.	c	t	2.000000000000000000000000	q30;ac5	DP=424;AC=1;AF=0.0024
hxb2_pol	2413	.	c	a	2.000000000000000000000000	q30;ac5	DP=432;AC=1;AF=0.0023
hxb2_pol	2414	.	a	c	2.000000000000000000000000	q30;ac5	DP=423;AC=1;AF=0.0024
hxb2_pol	2416	.	a	g	2.000000000000000000000000	q30;ac5	DP=428;AC=1;AF=0.0023
hxb2_pol	2417	.	g	a	2.000000000000000000000000	q30;ac5	DP=426;AC=1;AF=0.0023
hxb2_pol	2417	.	g	t	2.000000000000000000000000	q30;ac5	DP=426;AC=1;AF=0.0023
hxb2_pol	2418	.	t	c	2.000000000000000000000000	q30;ac5	DP=425;AC=1;AF=0.0024
hxb2_pol	2419	.	c	a	2.000000000000000000000000	q30;ac5	DP=423;AC=1;AF=0.0024
hxb2_pol	2421	.	a	g	2.000000000000000000000000	q30;ac5	DP=419;AC=1;AF=0.0024
hxb2_pol	2451	.	a	t	7.000000000000000000000000	q30;ac5	DP=367;AC=2;AF=0.0054
hxb2_pol	2454	.	g	a	2.000000000000000000000000	q30;ac5	DP=365;AC=1;AF=0.0027
hxb2_pol	2455	.	a	g	2.000000000000000000000000	q30;ac5	DP=355;AC=1;AF=0.0028
hxb2_pol	2533	.	a	t	10.00000000000000000000000	q30;ac5	DP=235;AC=2;AF=0.0085
hxb2_pol	2536	.	a	g	4.000000000000000000000000	q30;ac5	DP=230;AC=1;AF=0.0043
hxb2_pol	2537	.	g	a	19.00000000000000000000000	q30;ac5	DP=226;AC=3;AF=0.0133
hxb2_pol	2538	.	a	g	28.00000000000000000000000	q30;ac5	DP=223;AC=4;AF=0.0179
hxb2_pol	2541	.	a	g	11.00000000000000000000000	q30;ac5	DP=220;AC=2;AF=0.0091
hxb2_pol	2542	.	g	a	40.00000000000000000000000	PASS	DP=204;AC=5;AF=0.0245
hxb2_pol	2547	.	g	a	28.00000000000000000000000	q30;ac5	DP=229;AC=4;AF=0.0175
hxb2_pol	2548	.	a	g	3.000000000000000000000000	q30;ac5	DP=262;AC=1;AF=0.0038
hxb2_pol	2548	.	a	t	35.00000000000000000000000	PASS	DP=262;AC=5;AF=0.0191
hxb2_pol	2549	.	t	a	33.00000000000000000000000	PASS	DP=294;AC=5;AF=0.0170
hxb2_pol	2550	.	t	g	24.00000000000000000000000	q30;ac5	DP=298;AC=4;AF=0.0134
hxb2_pol	2551	.	g	t	32.00000000000000000000000	PASS	DP=304;AC=5;AF=0.0164
hxb2_pol	2569	.	g	a	12.00000000000000000000000	q30;ac5	DP=411;AC=3;AF=0.0073
hxb2_pol	2570	.	a	g	2.000000000000000000000000	q30;ac5	DP=404;AC=1;AF=0.0025
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hxb2_pol	2573	.	g	a	2.000000000000000000000000	q30;ac5	DP=407;AC=1;AF=0.0025
hxb2_pol	2588	.	t	a	2.000000000000000000000000	q30;ac5	DP=385;AC=1;AF=0.0026
hxb2_pol	2589	.	a	t	2.000000000000000000000000	q30;ac5	DP=382;AC=1;AF=0.0026
hxb2_pol	2590	.	g	a	2.000000000000000000000000	q30;ac5	DP=380;AC=1;AF=0.0026
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hxb2_pol	2592	.	a	c	2.000000000000000000000000	q30;ac5	DP=377;AC=1;AF=0.0027
hxb2_pol	2594	.	c	a	2.000000000000000000000000	q30;ac5	DP=378;AC=1;AF=0.0026
hxb2_pol	2605	.	a	c	2.000000000000000000000000	q30;ac5	DP=363;AC=1;AF=0.0028
hxb2_pol	2606	.	c	t	2.000000000000000000000000	q30;ac5	DP=362;AC=1;AF=0.0028
hxb2_pol	2607	.	t	a	2.000000000000000000000000	q30;ac5	DP=362;AC=1;AF=0.0028
hxb2_pol	2622	.	a	c	7.000000000000000000000000	q30;ac5	DP=346;AC=2;AF=0.0058
hxb2_pol	2623	.	c	a	21.00000000000000000000000	q30;ac5	DP=346;AC=4;AF=0.0116
hxb2_pol	2624	.	a	c	22.00000000000000000000000	q30;ac5	DP=342;AC=4;AF=0.0117
hxb2_pol	2626	.	a	t	7.000000000000000000000000	q30;ac5	DP=344;AC=2;AF=0.0058
hxb2_pol	2627	.	t	a	14.00000000000000000000000	q30;ac5	DP=347;AC=3;AF=0.0086
hxb2_pol	2628	.	t	a	7.000000000000000000000000	q30;ac5	DP=350;AC=2;AF=0.0057
hxb2_pol	2629	.	a	c	7.000000000000000000000000	q30;ac5	DP=349;AC=2;AF=0.0057
hxb2_pol	2629	.	a	t	14.00000000000000000000000	q30;ac5	DP=349;AC=3;AF=0.0086
hxb2_pol	2630	.	c	a	30.00000000000000000000000	PASS	DP=348;AC=5;AF=0.0144
hxb2_pol	2631	.	a	c	14.00000000000000000000000	q30;ac5	DP=327;AC=3;AF=0.0092
hxb2_pol	2635	.	a	t	7.000000000000000000000000	q30;ac5	DP=344;AC=2;AF=0.0058
hxb2_pol	2636	.	t	a	2.000000000000000000000000	q30;ac5	DP=343;AC=1;AF=0.0029
hxb2_pol	2637	.	t	c	7.000000000000000000000000	q30;ac5	DP=344;AC=2;AF=0.0058
hxb2_pol	2638	.	c	a	7.000000000000000000000000	q30;ac5	DP=344;AC=2;AF=0.0058
hxb2_pol	2638	.	c	t	7.000000000000000000000000	q30;ac5	DP=344;AC=2;AF=0.0058
hxb2_pol	2639	.	a	c	8.000000000000000000000000	q30;ac5	DP=333;AC=2;AF=0.0060
hxb2_pol	2642	.	a	t	14.00000000000000000000000	q30;ac5	DP=342;AC=3;AF=0.0088
hxb2_pol	2650	.	g	t	2.000000000000000000000000	q30;ac5	DP=338;AC=1;AF=0.0030
hxb2_pol	2651	.	t	g	2.000000000000000000000000	q30;ac5	DP=335;AC=1;AF=0.0030
hxb2_pol	2654	.	a	t	8.000000000000000000000000	q30;ac5	DP=332;AC=2;AF=0.0060
hxb2_pol	2655	.	t	a	2.000000000000000000000000	q30;ac5	DP=332;AC=1;AF=0.0030
hxb2_pol	2657	.	a	t	3.000000000000000000000000	q30;ac5	DP=331;AC=1;AF=0.0030
hxb2_pol	2658	.	c	a	3.000000000000000000000000	q30;ac5	DP=330;AC=1;AF=0.0030
hxb2_pol	2659	.	a	c	3.000000000000000000000000	q30;ac5	DP=329;AC=1;AF=0.0030
hxb2_pol	2660	.	g	a	3.000000000000000000000000	q30;ac5	DP=323;AC=1;AF=0.0031
hxb2_pol	2792	.	g	a	7.000000000000000000000000	q30;dp100;ac5	DP=93;AC=1;AF=0.0108