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comparison consensus.xml @ 3:8dacd75ca8f1 draft

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planemo upload for repository https://github.com/phac-nml/quasitools commit 68f3866f4ee926abe3ec1b936e5d6166f94fed6c
author nml
date Mon, 26 Mar 2018 15:38:19 -0400
parents a7093d5933a8
children 8cdffc02d2e2
comparison
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2:a7093d5933a8 3:8dacd75ca8f1
7 7
8 ln -f -s ${input_bam.metadata.bam_index} ${input_bam}.bai && 8 ln -f -s ${input_bam.metadata.bam_index} ${input_bam}.bai &&
9 quasitools consensus $input_bam $ref_file 9 quasitools consensus $input_bam $ref_file
10 10
11 #if $fasta_id.type == 'default': 11 #if $fasta_id.type == 'default':
12 -i $input_bam.name 12 -i '${input_bam.element_identifier}'
13 #elif $fasta_id.type == 'custom': 13 #elif $fasta_id.type == 'custom':
14 -i $fasta_id.custom_id 14 -i '${fasta_id.custom_id}'
15 #end if 15 #end if
16 16
17 #if $base_type.type == 'mixed': 17 #if $base_type.type == 'mixed':
18 -p $base_type.percentage 18 -p $base_type.percentage
19 #end if 19 #end if