Mercurial > repos > nml > quasitools
comparison hydra.xml @ 8:9def47f3c1e4 draft
planemo upload for repository https://github.com/phac-nml/quasitools commit 940b463cac33438233bc7a8a1695ca6d34b31a35
| author | nml |
|---|---|
| date | Tue, 06 Aug 2019 08:50:28 -0400 |
| parents | dcd43b402eb3 |
| children | 18aad692772a |
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| 7:dcd43b402eb3 | 8:9def47f3c1e4 |
|---|---|
| 224 <has_text_matching expression="#CHROM\sGENE\sTYPE\sWILDTYPE\sPOS\sMUTANT\sFILTER\sMUTANT_FREQ\sCOVERAGE\sINFO"/> | 224 <has_text_matching expression="#CHROM\sGENE\sTYPE\sWILDTYPE\sPOS\sMUTANT\sFILTER\sMUTANT_FREQ\sCOVERAGE\sINFO"/> |
| 225 <has_text_matching expression="hxb2_pol\sRT\smutation\sK\s101\sP\sPASS\s0.1423\s1574\sWC=aaa;MC=CCa;MCF=0.1423;CAT=NNRTI;SRVL=Yes" /> | 225 <has_text_matching expression="hxb2_pol\sRT\smutation\sK\s101\sP\sPASS\s0.1423\s1574\sWC=aaa;MC=CCa;MCF=0.1423;CAT=NNRTI;SRVL=Yes" /> |
| 226 <has_text_matching expression="hxb2_pol\sRT\smutation\sH\s221\sN\sPASS\s0.0113\s2475\sWC=cat;MC=Aat;MCF=0.0113;CAT=.;SRVL=." /> | 226 <has_text_matching expression="hxb2_pol\sRT\smutation\sH\s221\sN\sPASS\s0.0113\s2475\sWC=cat;MC=Aat;MCF=0.0113;CAT=.;SRVL=." /> |
| 227 </assert_contents> | 227 </assert_contents> |
| 228 </output> | 228 </output> |
| 229 | |
| 229 <output name="output_stats"> | 230 <output name="output_stats"> |
| 230 <assert_contents> | 231 <assert_contents> |
| 231 <has_text text="Input Size: 25000"/> | 232 <has_text text="Input Size: 25000"/> |
| 232 <has_text text="Number of reads filtered due to length: 15074"/> | 233 <has_text text="Number of reads filtered due to length: 15074"/> |
| 233 <has_text text="Number of reads filtered due to average quality score: 501"/> | 234 <has_text text="Number of reads filtered due to average quality score: 501"/> |