comparison distance.xml @ 9:18aad692772a draft default tip

planemo upload for repository https://github.com/phac-nml/quasitools commit 5a9e4c9a582828654893166caf20576f5e0c418e

8:9def47f3c1e4

<tool id="distance" name="Quasispecies Distance" version="0.7.0">
    <description>Calculate the evolutionary distance between viral quasispecies.</description>
    <requirements>
          <requirement type="package" version="0.7.0">quasitools</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[

        #for $bam_file in $bam_files
        ln -s $bam_file '${bam_file.name}' &&
        ln -s $bam_file.metadata.bam_index '${bam_file.name}.bai' &&

-------

A CSV file containing a matrix of similarities or distances, as requested by the user.

    ]]></help>
    <citations>
        <citation type="bibtex">
            @misc{GitHubquasitoolsdistance,
            title = {quasitools distance},
            publisher = {phac-nml},
            journal = {GitHub repository},
            url = {https://github.com/phac-nml/quasitools},
            }
        </citation>
    </citations>
</tool>

9:18aad692772a

<tool id="distance" name="Quasispecies Distance" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
    <description>Calculate the evolutionary distance between viral quasispecies.</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements"/>
    <command detect_errors="exit_code"><![CDATA[

        #for $bam_file in $bam_files
        ln -s $bam_file '${bam_file.name}' &&
        ln -s $bam_file.metadata.bam_index '${bam_file.name}.bai' &&

-------

A CSV file containing a matrix of similarities or distances, as requested by the user.

    ]]></help>
    <expand macro="citations" />
</tool>