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comparison dnds.xml @ 9:18aad692772a draft default tip

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planemo upload for repository https://github.com/phac-nml/quasitools commit 5a9e4c9a582828654893166caf20576f5e0c418e
author nml
date Mon, 20 Jun 2022 20:06:36 +0000
parents 9def47f3c1e4
children
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8:9def47f3c1e4 9:18aad692772a
1 <tool id="dnds" name="dNdS Report" version="0.7.0"> 1 <tool id="dnds" name="dNdS Report" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
2 <description>Calculate the dN/dS value for each region in a bed file</description> 2 <description>Calculate the dN/dS value for each region in a bed file</description>
3 <requirements> 3 <macros>
4 <requirement type="package" version="0.7.0">quasitools</requirement> 4 <import>macros.xml</import>
5 </requirements> 5 </macros>
6 <expand macro="requirements"/>
6 <command detect_errors="exit_code"><![CDATA[ 7 <command detect_errors="exit_code"><![CDATA[
7 8
8 quasitools dnds $csv_file $ref_file $offset -o output.csv 9 quasitools dnds $csv_file $ref_file $offset -o output.csv
9 10
10 ]]></command> 11 ]]></command>
34 =================== 35 ===================
35 36
36 Determines the dNdS ratio for each codon variant in a supplied csv file (codon variants). 37 Determines the dNdS ratio for each codon variant in a supplied csv file (codon variants).
37 38
38 ]]></help> 39 ]]></help>
39 <citations> 40 <expand macro="citations" />
40 <citation type="bibtex">
41 @misc{GitHubquasitoolsdnds,
42 title = {quasitools dnds},
43 publisher = {phac-nml},
44 journal = {GitHub repository},
45 url = {https://github.com/phac-nml/quasitools},
46 }
47 </citation>
48 </citations>
49 </tool> 41 </tool>