Mercurial > repos > nml > quasitools
diff test-data/nt_variants.vcf @ 0:71976cfc9022 draft
planemo upload for repository https://github.com/phac-nml/quasitools commit 8a264400a75945e2e0fdd5a08c007a8b1b7a2f0f
author | nml |
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date | Mon, 04 Dec 2017 10:25:26 -0500 |
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children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/nt_variants.vcf Mon Dec 04 10:25:26 2017 -0500 @@ -0,0 +1,1237 @@ +##fileformat=VCFv4.2 +##fileDate=20170330 +##source=HyDRA +##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth"> +##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele Count"> +##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency"> +##FILTER=<ID=q30,Description="Quality below 30"> +##FILTER=<ID=dp100,Description="Read depth below 100"> +##FILTER=<ID=ac5,Description="Allele count below 5"> +#CHROM POS ID REF ALT QUAL FILTER INFO +hxb2_pol 237 . t c 3.000000000000000000000000 q30;ac5 DP=315;AC=1;AF=0.0032 +hxb2_pol 238 . a t 3.000000000000000000000000 q30;ac5 DP=317;AC=1;AF=0.0032 +hxb2_pol 239 . c a 3.000000000000000000000000 q30;ac5 DP=321;AC=1;AF=0.0031 +hxb2_pol 240 . a c 3.000000000000000000000000 q30;ac5 DP=323;AC=1;AF=0.0031 +hxb2_pol 241 . c a 3.000000000000000000000000 q30;ac5 DP=325;AC=1;AF=0.0031 +hxb2_pol 291 . a t 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