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diff consensus.xml @ 5:b69e898b8109 draft

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planemo upload for repository https://github.com/phac-nml/quasitools commit e30c0687f755a46c5b3bd265a1478a1abf5dc9f1
author nml
date Fri, 24 Aug 2018 16:50:28 -0400
parents 8cdffc02d2e2
children dcd43b402eb3
line wrap: on
line diff
--- a/consensus.xml	Wed Apr 25 10:38:00 2018 -0400
+++ b/consensus.xml	Fri Aug 24 16:50:28 2018 -0400
@@ -1,21 +1,21 @@
-<tool id="consensus" name="Consensus Sequence" version="0.2.0">
+<tool id="consensus" name="Consensus Sequence" version="0.4.2">
     <description>Generate a consensus sequence from a BAM file</description>
     <requirements>
-          <requirement type="package" version="0.3.1">quasitools</requirement>
+          <requirement type="package" version="0.4.2">quasitools</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
 
         ln -f -s ${input_bam.metadata.bam_index} ${input_bam}.bai &&
-        quasitools consensus $input_bam $ref_file 
+        quasitools consensus $input_bam $ref_file
 
         #if $fasta_id.type == 'default':
-            -i '${input_bam.element_identifier}' 
+            -i '${input_bam.element_identifier}'
         #elif $fasta_id.type == 'custom':
             -i '${fasta_id.custom_id}'
         #end if
 
         #if $base_type.type == 'mixed':
-            -p $base_type.percentage 
+            -p $base_type.percentage
         #end if
 
         -o output.fasta