Mercurial > repos > nml > quasitools
diff drmutations.xml @ 5:b69e898b8109 draft
planemo upload for repository https://github.com/phac-nml/quasitools commit e30c0687f755a46c5b3bd265a1478a1abf5dc9f1
| author | nml |
|---|---|
| date | Fri, 24 Aug 2018 16:50:28 -0400 |
| parents | 8cdffc02d2e2 |
| children | dcd43b402eb3 |
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--- a/drmutations.xml Wed Apr 25 10:38:00 2018 -0400 +++ b/drmutations.xml Fri Aug 24 16:50:28 2018 -0400 @@ -1,15 +1,15 @@ -<tool id="drmutations" name="Drug Resistance Mutations" version="0.1.0"> +<tool id="drmutations" name="Drug Resistance Mutations" version="0.4.2"> <description></description> <requirements> - <requirement type="package" version="0.3.1">quasitools</requirement> + <requirement type="package" version="0.4.2">quasitools</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ ln -f -s ${input_bam.metadata.bam_index} ${input_bam}.bai && - quasitools drmutations $input_bam $ref_file $var_file $input_genes - + quasitools drmutations $input_bam $ref_file $var_file $input_genes + #if $mutation_db: - $mutation_db + $mutation_db #end if #if $min_freq: @@ -17,11 +17,11 @@ #end if #if $reporting_thres: - -t $reporting_thres + -t $reporting_thres #end if -o output.csv - + ]]></command> <inputs> <param name="input_bam" type="data" format="bam" optional="false" label="Bam file" />