Mercurial > repos > nml > quasitools
view test-data/test.vcf @ 6:9fb9fed71486 draft
planemo upload for repository https://github.com/phac-nml/quasitools commit 59e7cd4a6042f14a07488489a1dc3b05ee3bc15c
| author | nml |
|---|---|
| date | Fri, 12 Oct 2018 09:16:03 -0400 |
| parents | 71976cfc9022 |
| children |
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##fileformat=VCFv4.2 ##fileDate=20170925 ##source=quasitools ##contig=<ID=SIVmac239M5SpXplasmid_reference_1269-10407,length=9139> ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth"> ##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele Count"> ##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency"> ##FILTER=<ID=q30,Description="Set if True; QUAL<30"> ##FILTER=<ID=ac5,Description="Set if True; AC<5"> ##FILTER=<ID=dp100,Description="Set if True; DP<100"> #CHROM POS ID REF ALT QUAL FILTER INFO SIVmac239M5SpXplasmid_reference_1269-10407 13 . a t 3 q30;ac5 DP=394;AC=2;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 14 . g t 9 q30;ac5 DP=467;AC=4;AF=0.0086 SIVmac239M5SpXplasmid_reference_1269-10407 15 . g t 5 q30;ac5 DP=483;AC=3;AF=0.0062 SIVmac239M5SpXplasmid_reference_1269-10407 16 . a c 2 q30;ac5 DP=486;AC=2;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 16 . a t 2 q30;ac5 DP=486;AC=2;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 17 . a c 2 q30;ac5 DP=490;AC=2;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 18 . g a 1 q30;ac5 DP=602;AC=2;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 18 . g t 3 q30;ac5 DP=602;AC=3;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 19 . g t 16 q30 DP=870;AC=8;AF=0.0092 SIVmac239M5SpXplasmid_reference_1269-10407 25 . t a 4 q30 DP=1799;AC=8;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 25 . t g 10 q30 DP=1799;AC=11;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 28 . g t 3 q30 DP=2225;AC=9;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 30 . t a 3 q30 DP=2274;AC=9;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 30 . t g 5 q30 DP=2274;AC=11;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 32 . g t 1 q30 DP=2587;AC=8;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 33 . a t 1 q30 DP=2624;AC=8;AF=0.0030 SIVmac239M5SpXplasmid_reference_1269-10407 35 . t g 10 q30 DP=2708;AC=15;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 36 . g t 19 q30 DP=2750;AC=19;AF=0.0069 SIVmac239M5SpXplasmid_reference_1269-10407 42 . t a 1 q30 DP=2953;AC=10;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 46 . c a 6 q30 DP=3128;AC=15;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 49 . g t 5 q30 DP=3303;AC=15;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 51 . g t 2 q30 DP=3345;AC=13;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 54 . a g 1 q30 DP=3463;AC=11;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 56 . t a 3 q30 DP=3502;AC=14;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 56 . t g 17 q30 DP=3502;AC=22;AF=0.0063 SIVmac239M5SpXplasmid_reference_1269-10407 57 . c a 4 q30 DP=3533;AC=15;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 58 . c a 1 q30 DP=3543;AC=12;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 61 . c a 1 q30 DP=3630;AC=12;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 62 . t g 3 q30 DP=3647;AC=15;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 66 . c a 3 q30 DP=3772;AC=15;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 69 . g a 2 q30 DP=3853;AC=14;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 86 . t g 19 q30 DP=4543;AC=28;AF=0.0062 SIVmac239M5SpXplasmid_reference_1269-10407 87 . t g 3 q30 DP=4545;AC=18;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 96 . t g 43 PASS DP=4838;AC=38;AF=0.0079 SIVmac239M5SpXplasmid_reference_1269-10407 101 . c a 4 q30 DP=5025;AC=21;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 102 . t a 1 q30 DP=5015;AC=16;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 102 . t g 1 q30 DP=5015;AC=17;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 107 . c a 11 q30 DP=5234;AC=27;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 108 . c a 3 q30 DP=5190;AC=21;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 109 . c a 17 q30 DP=5197;AC=30;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 125 . t g 1 q30 DP=5724;AC=19;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 132 . t a 2 q30 DP=6127;AC=23;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 132 . t g 11 q30 DP=6127;AC=31;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 133 . g t 1 q30 DP=6169;AC=22;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 135 . a g 1 q30 DP=6353;AC=22;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 137 . c a 1 q30 DP=6476;AC=23;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 144 . t g 1 q30 DP=7588;AC=27;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 148 . g t 17 q30 DP=7351;AC=40;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 150 . c a 5 q30 DP=7268;AC=31;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 161 . t g 15 q30 DP=7616;AC=40;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 162 . t g 3 q30 DP=7613;AC=30;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 166 . t g 2 q30 DP=7734;AC=28;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 170 . t a 4 q30 DP=7906;AC=32;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 170 . t g 28 q30 DP=7906;AC=48;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 171 . t a 35 PASS DP=7910;AC=51;AF=0.0064 SIVmac239M5SpXplasmid_reference_1269-10407 171 . t g 5 q30 DP=7910;AC=34;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 172 . t a 9 q30 DP=7869;AC=37;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 172 . t g 2 q30 DP=7869;AC=29;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 173 . g t 4 q30 DP=7915;AC=33;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 187 . c a 13 q30 DP=8100;AC=41;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 188 . c a 5 q30 DP=8089;AC=34;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 194 . g t 8 q30 DP=8140;AC=37;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 206 . g t 7 q30 DP=8076;AC=36;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 207 . g t 2 q30 DP=7991;AC=29;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 209 . t g 2 q30 DP=7707;AC=28;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 212 . c a 4 q30 DP=7710;AC=32;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 224 . t a 1 q30 DP=7242;AC=25;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 226 . g t 9 q30 DP=7172;AC=34;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 234 . c a 1 q30 DP=7199;AC=25;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 236 . c a 5 q30 DP=7034;AC=30;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 237 . c a 10 q30 DP=6921;AC=34;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 239 . t g 1 q30 DP=6920;AC=23;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 245 . c a 2 q30 DP=6591;AC=24;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 246 . c a 6 q30 DP=6551;AC=29;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 253 . c a 1 q30 DP=6375;AC=21;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 254 . t g 4 q30 DP=6347;AC=26;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 255 . c a 6 q30 DP=6334;AC=28;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 262 . t g 18 q30 DP=6333;AC=36;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 263 . t g 2 q30 DP=6342;AC=24;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 271 . c a 4 q30 DP=6400;AC=26;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 272 . c a 12 q30 DP=6432;AC=33;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 273 . t g 2 q30 DP=6406;AC=24;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 274 . t g 5 q30 DP=7290;AC=31;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 285 . t a 2 q30 DP=5824;AC=21;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 285 . t g 45 PASS DP=5824;AC=44;AF=0.0076 SIVmac239M5SpXplasmid_reference_1269-10407 287 . t g 3 q30 DP=5804;AC=23;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 288 . g t 1 q30 DP=5810;AC=19;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 289 . c a 17 q30 DP=5802;AC=33;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 291 . t g 4 q30 DP=5788;AC=24;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 294 . t a 4 q30 DP=5703;AC=24;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 294 . t g 4 q30 DP=5703;AC=24;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 297 . g t 2 q30 DP=5570;AC=20;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 303 . t a 1 q30 DP=5494;AC=19;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 303 . t g 41 PASS DP=5494;AC=41;AF=0.0075 SIVmac239M5SpXplasmid_reference_1269-10407 305 . c a 8 q30 DP=5472;AC=26;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 309 . c a 1 q30 DP=5455;AC=19;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 314 . g t 1 q30 DP=5559;AC=18;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 315 . a g 2 q30 DP=5532;AC=20;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 321 . t a 2 q30 DP=5481;AC=21;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 328 . c a 3 q30 DP=5479;AC=22;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 330 . c a 10 q30 DP=5334;AC=27;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 331 . t a 4 q30 DP=5255;AC=22;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 331 . t c 1 q30 DP=5255;AC=18;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 334 . g a 6 q30 DP=5260;AC=24;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 339 . c a 36 PASS DP=5090;AC=37;AF=0.0073 SIVmac239M5SpXplasmid_reference_1269-10407 342 . a c 1 q30 DP=4942;AC=17;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 351 . t g 1 q30 DP=5106;AC=17;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 359 . c a 7 q30 DP=4729;AC=22;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 361 . c a 9 q30 DP=4767;AC=24;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 362 . c a 8 q30 DP=4741;AC=23;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 363 . t g 10 q30 DP=4725;AC=24;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 366 . t g 2 q30 DP=4686;AC=18;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 367 . g a 10 q30 DP=4715;AC=24;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 370 . g a 2 q30 DP=4605;AC=17;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 370 . g t 6 q30 DP=4605;AC=21;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 390 . c a 5 q30 DP=4756;AC=21;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 391 . t a 2 q30 DP=4662;AC=17;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 391 . t g 40 PASS DP=4662;AC=36;AF=0.0077 SIVmac239M5SpXplasmid_reference_1269-10407 393 . t a 9 q30 DP=4581;AC=23;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 393 . t g 6 q30 DP=4581;AC=21;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 395 . c a 35 PASS DP=4607;AC=34;AF=0.0074 SIVmac239M5SpXplasmid_reference_1269-10407 396 . c a 39 PASS DP=4694;AC=36;AF=0.0077 SIVmac239M5SpXplasmid_reference_1269-10407 400 . a c 3 q30 DP=4732;AC=19;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 404 . a c 2 q30 DP=4809;AC=18;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 406 . t a 1 q30 DP=4838;AC=17;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 406 . t g 2 q30 DP=4838;AC=18;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 408 . g t 6 q30 DP=4850;AC=22;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 410 . c a 4 q30 DP=4847;AC=20;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 411 . c a 9 q30 DP=4868;AC=24;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 413 . a g 1 q30 DP=4856;AC=16;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 414 . c a 3 q30 DP=4909;AC=19;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 417 . c a 12 q30 DP=4893;AC=26;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 419 . c a 7 q30 DP=4912;AC=23;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 420 . c a 35 PASS DP=4743;AC=35;AF=0.0074 SIVmac239M5SpXplasmid_reference_1269-10407 422 . t a 31 PASS DP=4848;AC=34;AF=0.0070 SIVmac239M5SpXplasmid_reference_1269-10407 422 . t g 99 PASS DP=4848;AC=52;AF=0.0107 SIVmac239M5SpXplasmid_reference_1269-10407 424 . t a 6 q30 DP=4846;AC=22;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 426 . g a 1 q30 DP=4787;AC=16;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 426 . g t 5 q30 DP=4787;AC=21;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 427 . c a 1 q30 DP=4753;AC=16;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 428 . g t 13 q30 DP=4729;AC=26;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 430 . c a 27 q30 DP=4702;AC=32;AF=0.0068 SIVmac239M5SpXplasmid_reference_1269-10407 433 . a c 7 q30 DP=4671;AC=22;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 434 . g t 4 q30 DP=4739;AC=20;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 435 . g t 4 q30 DP=4747;AC=20;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 436 . a c 1 q30 DP=4721;AC=16;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 437 . g t 1 q30 DP=4762;AC=16;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 438 . g t 4 q30 DP=4769;AC=20;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 440 . a c 3 q30 DP=4904;AC=19;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 441 . a c 2 q30 DP=4871;AC=18;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 442 . t a 2 q30 DP=4884;AC=18;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 442 . t g 14 q30 DP=4884;AC=27;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 443 . t g 7 q30 DP=4845;AC=23;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 445 . c a 15 q30 DP=4960;AC=28;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 446 . c a 92 PASS DP=4931;AC=51;AF=0.0103 SIVmac239M5SpXplasmid_reference_1269-10407 447 . c a 17 q30 DP=4971;AC=29;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 450 . t a 3 q30 DP=5188;AC=21;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 450 . t g 10 q30 DP=5188;AC=26;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 452 . c a 8 q30 DP=5257;AC=25;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 453 . a g 1 q30 DP=5215;AC=17;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 455 . c a 8 q30 DP=5415;AC=26;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 458 . a g 1 q30 DP=5151;AC=17;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 459 . t a 2 q30 DP=5136;AC=19;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 459 . t g 44 PASS DP=5136;AC=40;AF=0.0078 SIVmac239M5SpXplasmid_reference_1269-10407 461 . g t 1 q30 DP=5215;AC=17;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 462 . g t 1 q30 DP=5273;AC=17;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 463 . t a 9 q30 DP=5192;AC=26;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 464 . g t 17 q30 DP=5177;AC=30;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 470 . t g 4 q30 DP=5319;AC=22;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 472 . t a 6 q30 DP=5267;AC=24;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 472 . t g 1 q30 DP=5267;AC=18;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 474 . t g 9 q30 DP=5085;AC=25;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 475 . c a 18 q30 DP=5082;AC=30;AF=0.0059 SIVmac239M5SpXplasmid_reference_1269-10407 476 . c a 13 q30 DP=5000;AC=27;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 478 . c a 57 PASS DP=5010;AC=43;AF=0.0086 SIVmac239M5SpXplasmid_reference_1269-10407 479 . c a 12 q30 DP=4915;AC=26;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 480 . t g 1 q30 DP=4891;AC=17;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 482 . c a 21 q30 DP=5011;AC=31;AF=0.0062 SIVmac239M5SpXplasmid_reference_1269-10407 483 . c a 4 q30 DP=5036;AC=21;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 485 . t g 21 q30 DP=5035;AC=31;AF=0.0062 SIVmac239M5SpXplasmid_reference_1269-10407 486 . t g 1 q30 DP=5048;AC=17;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 488 . a c 1 q30 DP=5035;AC=17;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 490 . c a 71 PASS DP=5067;AC=47;AF=0.0093 SIVmac239M5SpXplasmid_reference_1269-10407 491 . c a 72 PASS DP=5057;AC=47;AF=0.0093 SIVmac239M5SpXplasmid_reference_1269-10407 492 . c a 26 q30 DP=5013;AC=33;AF=0.0066 SIVmac239M5SpXplasmid_reference_1269-10407 493 . g t 1 q30 DP=5001;AC=16;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 494 . a c 1 q30 DP=5007;AC=17;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 495 . g t 6 q30 DP=5032;AC=23;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 500 . t a 5 q30 DP=5330;AC=23;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 500 . t g 51 PASS DP=5330;AC=43;AF=0.0081 SIVmac239M5SpXplasmid_reference_1269-10407 501 . t g 7 q30 DP=5323;AC=25;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 507 . c a 16 q30 DP=5260;AC=30;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 508 . c a 14 q30 DP=5249;AC=29;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 510 . g t 1 q30 DP=5272;AC=18;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 511 . g a 5 q30 DP=5253;AC=23;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 513 . t g 2 q30 DP=5274;AC=19;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 516 . a c 7 q30 DP=5337;AC=25;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 518 . t g 27 q30 DP=5333;AC=35;AF=0.0066 SIVmac239M5SpXplasmid_reference_1269-10407 521 . a c 4 q30 DP=5244;AC=22;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 522 . t g 16 q30 DP=5225;AC=30;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 523 . a c 3 q30 DP=5223;AC=21;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 525 . a c 1 q30 DP=5191;AC=18;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 526 . g t 7 q30 DP=5188;AC=24;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 527 . g t 19 q30 DP=5187;AC=31;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 528 . a c 3 q30 DP=5159;AC=20;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 534 . a g 1 q30 DP=5192;AC=17;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 536 . t g 90 PASS DP=5141;AC=52;AF=0.0101 SIVmac239M5SpXplasmid_reference_1269-10407 537 . t a 1 q30 DP=5144;AC=17;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 537 . t g 48 PASS DP=5144;AC=41;AF=0.0080 SIVmac239M5SpXplasmid_reference_1269-10407 540 . g t 3 q30 DP=5125;AC=20;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 543 . c a 5 q30 DP=5115;AC=22;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 554 . c a 17 q30 DP=4780;AC=28;AF=0.0059 SIVmac239M5SpXplasmid_reference_1269-10407 555 . c a 22 q30 DP=4757;AC=30;AF=0.0063 SIVmac239M5SpXplasmid_reference_1269-10407 558 . g a 1 q30 DP=4740;AC=15;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 558 . g t 6 q30 DP=4740;AC=22;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 562 . t g 25 q30 DP=4664;AC=31;AF=0.0066 SIVmac239M5SpXplasmid_reference_1269-10407 566 . g t 1 q30 DP=4633;AC=16;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 567 . c a 9 q30 DP=4585;AC=23;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 573 . c a 5 q30 DP=4694;AC=21;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 581 . t g 4 q30 DP=4271;AC=18;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 585 . c a 1 q30 DP=4278;AC=15;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 586 . c a 56 PASS DP=4233;AC=38;AF=0.0090 SIVmac239M5SpXplasmid_reference_1269-10407 587 . c a 28 q30 DP=4474;AC=31;AF=0.0069 SIVmac239M5SpXplasmid_reference_1269-10407 588 . c a 66 PASS DP=4451;AC=42;AF=0.0094 SIVmac239M5SpXplasmid_reference_1269-10407 589 . c a 5 q30 DP=4496;AC=20;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 590 . t g 3 q30 DP=4494;AC=18;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 597 . t g 1 q30 DP=4158;AC=14;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 598 . t g 1 q30 DP=4069;AC=13;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 605 . a c 1 q30 DP=3963;AC=13;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 606 . t g 3 q30 DP=3986;AC=16;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 614 . t g 5 q30 DP=3847;AC=17;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 620 . g t 4 q30 DP=3845;AC=16;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 621 . g t 4 q30 DP=3836;AC=16;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 622 . a t 1 q30 DP=3788;AC=13;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 623 . g t 1 q30 DP=3783;AC=13;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 624 . a g 1 q30 DP=3688;AC=12;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 625 . c a 2 q30 DP=3719;AC=14;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 626 . c a 11 q30 DP=3654;AC=20;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 628 . t c 1 q30 DP=3683;AC=13;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 628 . t g 2 q30 DP=3683;AC=14;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 631 . a c 2 q30 DP=3644;AC=14;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 632 . g t 1 q30 DP=3644;AC=12;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 637 . t g 9 q30 DP=3691;AC=19;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 646 . t g 3 q30 DP=3635;AC=15;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 655 . t g 1 q30 DP=3455;AC=12;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 657 . t a 3 q30 DP=3499;AC=14;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 657 . t g 3 q30 DP=3499;AC=14;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 658 . t g 2 q30 DP=3494;AC=13;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 668 . g t 2 q30 DP=3100;AC=11;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 670 . g t 2 q30 DP=3102;AC=11;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 673 . t g 1 q30 DP=3066;AC=10;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 676 . a g 2 q30 DP=3082;AC=12;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 679 . t g 2 q30 DP=3109;AC=12;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 681 . g t 8 q30 DP=3118;AC=16;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 682 . g t 5 q30 DP=3110;AC=14;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 683 . g t 2 q30 DP=3124;AC=12;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 685 . c a 3 q30 DP=3131;AC=13;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 686 . t a 2 q30 DP=3086;AC=11;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 686 . t g 20 q30 DP=3086;AC=21;AF=0.0068 SIVmac239M5SpXplasmid_reference_1269-10407 687 . t g 17 q30 DP=3101;AC=20;AF=0.0064 SIVmac239M5SpXplasmid_reference_1269-10407 688 . g t 1 q30 DP=3107;AC=10;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 692 . c a 2 q30 DP=3111;AC=12;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 694 . c a 17 q30 DP=3267;AC=21;AF=0.0064 SIVmac239M5SpXplasmid_reference_1269-10407 695 . c a 1 q30 DP=3268;AC=11;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 696 . c a 17 q30 DP=3271;AC=21;AF=0.0064 SIVmac239M5SpXplasmid_reference_1269-10407 702 . c a 3 q30 DP=3271;AC=13;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 705 . c a 5 q30 DP=3275;AC=15;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 706 . t a 13 q30 DP=3266;AC=19;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 706 . t c 3 q30 DP=3266;AC=13;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 706 . t g 26 q30 DP=3266;AC=24;AF=0.0073 SIVmac239M5SpXplasmid_reference_1269-10407 707 . c a 2 q30 DP=3274;AC=12;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 708 . c a 23 q30 DP=3274;AC=23;AF=0.0070 SIVmac239M5SpXplasmid_reference_1269-10407 710 . c a 1 q30 DP=3316;AC=11;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 713 . c a 5 q30 DP=3323;AC=15;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 716 . g t 5 q30 DP=3312;AC=15;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 719 . c a 12 q30 DP=3328;AC=19;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 723 . t g 11 q30 DP=3596;AC=20;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 724 . t g 10 q30 DP=3595;AC=19;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 728 . g t 1 q30 DP=3560;AC=12;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 729 . a t 1 q30 DP=3530;AC=12;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 730 . g t 1 q30 DP=3460;AC=11;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 731 . c a 11 q30 DP=3456;AC=19;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 732 . c a 32 PASS DP=3452;AC=27;AF=0.0078 SIVmac239M5SpXplasmid_reference_1269-10407 734 . t a 4 q30 DP=3562;AC=15;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 734 . t g 3 q30 DP=3562;AC=14;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 735 . c a 2 q30 DP=3558;AC=13;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 737 . g t 2 q30 DP=3723;AC=14;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 738 . g t 2 q30 DP=3800;AC=14;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 739 . a c 5 q30 DP=3878;AC=17;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 740 . t a 6 q30 DP=3883;AC=18;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 740 . t c 1 q30 DP=3883;AC=13;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 743 . g t 3 q30 DP=4009;AC=16;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 745 . t g 4 q30 DP=4037;AC=17;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 746 . a c 2 q30 DP=3977;AC=15;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 747 . t g 8 q30 DP=4015;AC=20;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 748 . t g 4 q30 DP=4020;AC=17;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 750 . c a 4 q30 DP=4030;AC=17;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 752 . g t 2 q30 DP=4054;AC=15;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 753 . g t 8 q30 DP=4053;AC=20;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 760 . t g 28 q30 DP=4247;AC=30;AF=0.0071 SIVmac239M5SpXplasmid_reference_1269-10407 764 . t a 1 q30 DP=4354;AC=14;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 764 . t g 4 q30 DP=4354;AC=18;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 765 . c a 9 q30 DP=4374;AC=22;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 767 . g t 2 q30 DP=4456;AC=16;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 772 . t a 1 q30 DP=4398;AC=14;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 773 . g t 1 q30 DP=4488;AC=16;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 776 . c a 5 q30 DP=4601;AC=20;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 779 . a c 6 q30 DP=4629;AC=21;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 780 . t a 1 q30 DP=4642;AC=15;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 780 . t g 28 q30 DP=4642;AC=32;AF=0.0069 SIVmac239M5SpXplasmid_reference_1269-10407 781 . c a 7 q30 DP=4672;AC=22;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 782 . c a 14 q30 DP=4667;AC=26;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 784 . g t 4 q30 DP=4708;AC=20;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 786 . g a 6 q30 DP=4754;AC=22;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 787 . g a 2 q30 DP=4740;AC=18;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 789 . t g 4 q30 DP=4830;AC=20;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 791 . t g 1 q30 DP=4904;AC=16;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 793 . c a 2 q30 DP=5005;AC=18;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 797 . c a 27 q30 DP=5110;AC=34;AF=0.0067 SIVmac239M5SpXplasmid_reference_1269-10407 804 . a g 3 q30 DP=5265;AC=21;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 805 . c a 4 q30 DP=5522;AC=23;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 806 . c a 25 q30 DP=5494;AC=35;AF=0.0064 SIVmac239M5SpXplasmid_reference_1269-10407 807 . c a 13 q30 DP=5592;AC=30;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 808 . c a 13 q30 DP=5574;AC=30;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 810 . t a 27 q30 DP=5690;AC=37;AF=0.0065 SIVmac239M5SpXplasmid_reference_1269-10407 810 . t g 30 PASS DP=5690;AC=38;AF=0.0067 SIVmac239M5SpXplasmid_reference_1269-10407 812 . c a 17 q30 DP=5773;AC=33;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 813 . c a 11 q30 DP=5729;AC=29;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 815 . g t 11 q30 DP=5594;AC=29;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 816 . t a 7 q30 DP=5540;AC=26;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 816 . t g 12 q30 DP=5540;AC=29;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 818 . g t 3 q30 DP=5544;AC=22;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 819 . g t 7 q30 DP=5540;AC=26;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 820 . c a 32 PASS DP=5545;AC=38;AF=0.0069 SIVmac239M5SpXplasmid_reference_1269-10407 823 . c a 2 q30 DP=5725;AC=21;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 825 . t a 3 q30 DP=5905;AC=24;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 825 . t g 64 PASS DP=5905;AC=50;AF=0.0085 SIVmac239M5SpXplasmid_reference_1269-10407 826 . t a 9 q30 DP=5927;AC=29;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 826 . t g 25 q30 DP=5927;AC=37;AF=0.0062 SIVmac239M5SpXplasmid_reference_1269-10407 827 . t g 14 q30 DP=5962;AC=32;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 831 . g t 2 q30 DP=6042;AC=23;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 832 . g t 12 q30 DP=6013;AC=31;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 833 . a c 1 q30 DP=5993;AC=21;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 834 . g a 1 q30 DP=6012;AC=21;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 834 . g t 2 q30 DP=6012;AC=22;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 837 . g t 4 q30 DP=5992;AC=25;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 838 . g a 6 q30 DP=6033;AC=27;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 838 . g t 13 q30 DP=6033;AC=32;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 840 . t a 13 q30 DP=6132;AC=32;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 840 . t g 7 q30 DP=6132;AC=28;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 841 . c a 35 PASS DP=6139;AC=42;AF=0.0068 SIVmac239M5SpXplasmid_reference_1269-10407 842 . c a 57 PASS DP=6234;AC=50;AF=0.0080 SIVmac239M5SpXplasmid_reference_1269-10407 845 . c a 2 q30 DP=6281;AC=24;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 846 . t a 7 q30 DP=6259;AC=29;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 846 . t g 17 q30 DP=6259;AC=35;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 847 . g t 12 q30 DP=6220;AC=32;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 848 . g a 1 q30 DP=6223;AC=21;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 848 . g t 21 q30 DP=6223;AC=37;AF=0.0059 SIVmac239M5SpXplasmid_reference_1269-10407 849 . g a 21 q30 DP=6276;AC=37;AF=0.0059 SIVmac239M5SpXplasmid_reference_1269-10407 849 . g t 47 PASS DP=6276;AC=47;AF=0.0075 SIVmac239M5SpXplasmid_reference_1269-10407 850 . g t 1 q30 DP=6285;AC=21;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 851 . t a 2 q30 DP=6242;AC=23;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 852 . t a 1 q30 DP=6230;AC=22;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 854 . c a 18 q30 DP=6340;AC=36;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 857 . a c 1 q30 DP=6310;AC=21;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 858 . a c 1 q30 DP=6316;AC=21;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 860 . t g 13 q30 DP=6340;AC=33;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 864 . t a 3 q30 DP=6495;AC=26;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 865 . c a 4 q30 DP=6522;AC=27;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 878 . c a 25 q30 DP=7157;AC=43;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 879 . c a 32 PASS DP=7138;AC=46;AF=0.0064 SIVmac239M5SpXplasmid_reference_1269-10407 885 . a c 1 q30 DP=6931;AC=23;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 885 . a t 1 q30 DP=6931;AC=24;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 886 . c a 1 q30 DP=6978;AC=24;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 888 . t a 7 q30 DP=6991;AC=32;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 888 . t g 39 PASS DP=6991;AC=48;AF=0.0069 SIVmac239M5SpXplasmid_reference_1269-10407 889 . t a 13 q30 DP=6985;AC=36;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 889 . t g 42 PASS DP=6985;AC=49;AF=0.0070 SIVmac239M5SpXplasmid_reference_1269-10407 890 . c a 3 q30 DP=6998;AC=27;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 895 . t g 1 q30 DP=7007;AC=24;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 896 . g t 1 q30 DP=7023;AC=24;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 902 . c a 1 q30 DP=6987;AC=23;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 905 . g a 2 q30 DP=6767;AC=26;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 906 . g a 26 q30 DP=6832;AC=42;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 906 . g t 22 q30 DP=6832;AC=40;AF=0.0059 SIVmac239M5SpXplasmid_reference_1269-10407 907 . g a 16 q30 DP=6846;AC=37;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 907 . g t 4 q30 DP=6846;AC=28;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 908 . c a 88 PASS DP=6836;AC=62;AF=0.0091 SIVmac239M5SpXplasmid_reference_1269-10407 909 . c a 16 q30 DP=6843;AC=37;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 914 . g t 5 q30 DP=6834;AC=29;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 915 . a g 5 q30 DP=6753;AC=29;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 917 . c a 2 q30 DP=6774;AC=25;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 918 . c a 27 q30 DP=6770;AC=42;AF=0.0062 SIVmac239M5SpXplasmid_reference_1269-10407 920 . t g 8 q30 DP=7037;AC=33;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 921 . t g 9 q30 DP=6976;AC=33;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 922 . t a 1 q30 DP=6970;AC=25;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 923 . c a 18 q30 DP=6967;AC=39;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 928 . c a 16 q30 DP=7064;AC=38;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 929 . t a 1 q30 DP=6891;AC=24;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 929 . t g 9 q30 DP=6891;AC=33;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 937 . c a 3 q30 DP=7146;AC=28;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 939 . g t 6 q30 DP=6554;AC=29;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 941 . t a 21 q30 DP=6472;AC=38;AF=0.0059 SIVmac239M5SpXplasmid_reference_1269-10407 941 . t c 1 q30 DP=6472;AC=22;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 942 . t a 1 q30 DP=6441;AC=21;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 942 . t g 4 q30 DP=6441;AC=27;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 943 . c a 6 q30 DP=6464;AC=29;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 946 . c a 2 q30 DP=6433;AC=24;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 948 . a c 1 q30 DP=6373;AC=21;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 949 . a c 2 q30 DP=6330;AC=24;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 950 . a c 1 q30 DP=6323;AC=22;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 952 . t a 1 q30 DP=6303;AC=22;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 952 . t g 1 q30 DP=6303;AC=22;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 953 . t a 8 q30 DP=6301;AC=30;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 953 . t g 8 q30 DP=6301;AC=30;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 962 . g t 1 q30 DP=6265;AC=22;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 973 . t a 1 q30 DP=5882;AC=20;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 973 . t g 1 q30 DP=5882;AC=20;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 975 . c a 6 q30 DP=5847;AC=26;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 978 . c a 2 q30 DP=5733;AC=22;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 986 . a c 1 q30 DP=5577;AC=18;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 988 . t g 2 q30 DP=5502;AC=21;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 990 . g a 4 q30 DP=5206;AC=22;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 996 . c a 1 q30 DP=5241;AC=17;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 997 . t g 7 q30 DP=5206;AC=24;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 998 . c a 2 q30 DP=5219;AC=20;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 1004 . c a 18 q30 DP=5057;AC=30;AF=0.0059 SIVmac239M5SpXplasmid_reference_1269-10407 1007 . c a 2 q30 DP=4495;AC=17;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 1008 . t g 2 q30 DP=4400;AC=17;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 1009 . g t 4 q30 DP=4418;AC=19;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 1011 . t a 1 q30 DP=4430;AC=15;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 1011 . t g 1 q30 DP=4430;AC=14;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 1012 . t g 12 q30 DP=4423;AC=24;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 1013 . c a 1 q30 DP=4343;AC=15;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 1018 . t g 8 q30 DP=4293;AC=21;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 1024 . c a 11 q30 DP=4258;AC=23;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 1025 . c a 20 q30 DP=4259;AC=27;AF=0.0063 SIVmac239M5SpXplasmid_reference_1269-10407 1025 . c t 2 q30 DP=4259;AC=16;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 1026 . c a 14 q30 DP=4233;AC=24;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 1030 . t g 39 PASS DP=4185;AC=33;AF=0.0079 SIVmac239M5SpXplasmid_reference_1269-10407 1031 . t g 25 q30 DP=4116;AC=28;AF=0.0068 SIVmac239M5SpXplasmid_reference_1269-10407 1033 . c a 1 q30 DP=4043;AC=13;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 1037 . c a 1 q30 DP=4048;AC=13;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 1038 . t g 39 PASS DP=4009;AC=32;AF=0.0080 SIVmac239M5SpXplasmid_reference_1269-10407 1041 . t c 1 q30 DP=3934;AC=13;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 1041 . t g 19 q30 DP=3934;AC=25;AF=0.0064 SIVmac239M5SpXplasmid_reference_1269-10407 1043 . c a 5 q30 DP=3958;AC=18;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 1044 . t g 11 q30 DP=3907;AC=21;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 1046 . a c 2 q30 DP=3878;AC=15;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 1047 . a c 6 q30 DP=3872;AC=18;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 1047 . a g 7 q30 DP=3872;AC=19;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 1048 . g t 2 q30 DP=3862;AC=14;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 1049 . g t 31 PASS DP=3703;AC=28;AF=0.0076 SIVmac239M5SpXplasmid_reference_1269-10407 1050 . g t 7 q30 DP=3737;AC=18;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 1052 . c a 9 q30 DP=3708;AC=19;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 1053 . t g 1 q30 DP=3677;AC=12;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 1054 . g t 3 q30 DP=3754;AC=15;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 1055 . g a 2 q30 DP=3790;AC=14;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 1055 . g t 4 q30 DP=3790;AC=16;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 1057 . t g 52 PASS DP=3885;AC=35;AF=0.0090 SIVmac239M5SpXplasmid_reference_1269-10407 1059 . t a 1 q30 DP=3850;AC=12;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 1059 . t g 13 q30 DP=3850;AC=22;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 1060 . g t 3 q30 DP=3880;AC=16;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 1063 . t g 100 PASS DP=3854;AC=51;AF=0.0132 SIVmac239M5SpXplasmid_reference_1269-10407 1064 . c a 16 q30 DP=3818;AC=23;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 1064 . c t 1 q30 DP=3818;AC=12;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 1065 . c a 28 q30 DP=3729;AC=27;AF=0.0072 SIVmac239M5SpXplasmid_reference_1269-10407 1066 . c a 11 q30 DP=3700;AC=20;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 1066 . c g 1 q30 DP=3700;AC=13;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 1067 . a g 9 q30 DP=3699;AC=19;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 1068 . c a 11 q30 DP=3835;AC=21;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 1069 . c a 33 PASS DP=3786;AC=29;AF=0.0077 SIVmac239M5SpXplasmid_reference_1269-10407 1070 . c a 4 q30 DP=3769;AC=16;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 1071 . t a 2 q30 DP=3763;AC=14;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 1071 . t g 10 q30 DP=3763;AC=20;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 1074 . a c 2 q30 DP=3831;AC=14;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 1075 . a c 1 q30 DP=3853;AC=13;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 1076 . g t 1 q30 DP=3852;AC=12;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 1077 . a g 1 q30 DP=3701;AC=13;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 1078 . a g 4 q30 DP=3701;AC=16;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 1079 . a c 1 q30 DP=3698;AC=12;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 1080 . t g 12 q30 DP=3709;AC=21;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 1081 . g t 1 q30 DP=3727;AC=12;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 1082 . c a 5 q30 DP=3717;AC=17;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 1083 . t g 38 PASS DP=3695;AC=30;AF=0.0081 SIVmac239M5SpXplasmid_reference_1269-10407 1084 . g t 1 q30 DP=3698;AC=13;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 1085 . a c 2 q30 DP=3690;AC=14;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 1085 . a g 2 q30 DP=3690;AC=14;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 1086 . c a 6 q30 DP=3690;AC=17;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 1089 . c a 12 q30 DP=3709;AC=21;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 1089 . c g 1 q30 DP=3709;AC=12;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 1090 . t g 45 PASS DP=3706;AC=32;AF=0.0086 SIVmac239M5SpXplasmid_reference_1269-10407 1091 . t g 45 PASS DP=3724;AC=32;AF=0.0086 SIVmac239M5SpXplasmid_reference_1269-10407 1093 . t a 16 q30 DP=3821;AC=23;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 1093 . t g 100 PASS DP=3821;AC=53;AF=0.0139 SIVmac239M5SpXplasmid_reference_1269-10407 1094 . c a 12 q30 DP=3799;AC=21;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 1095 . a c 18 q30 DP=3788;AC=24;AF=0.0063 SIVmac239M5SpXplasmid_reference_1269-10407 1096 . a c 36 PASS DP=3782;AC=30;AF=0.0079 SIVmac239M5SpXplasmid_reference_1269-10407 1097 . g t 2 q30 DP=3806;AC=14;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 1099 . a c 32 PASS DP=3833;AC=29;AF=0.0076 SIVmac239M5SpXplasmid_reference_1269-10407 1099 . a g 8 q30 DP=3833;AC=19;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 1101 . t g 90 PASS DP=3783;AC=43;AF=0.0114 SIVmac239M5SpXplasmid_reference_1269-10407 1102 . a c 1 q30 DP=3777;AC=12;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 1104 . g t 14 q30 DP=3785;AC=22;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 1105 . g a 5 q30 DP=3779;AC=17;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 1105 . g t 7 q30 DP=3779;AC=18;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 1106 . g a 4 q30 DP=3743;AC=16;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 1106 . g t 10 q30 DP=3743;AC=20;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 1107 . g a 2 q30 DP=3706;AC=14;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 1107 . g t 5 q30 DP=3706;AC=17;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 1108 . g t 1 q30 DP=3709;AC=12;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 1109 . c a 10 q30 DP=3706;AC=20;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 1109 . c t 1 q30 DP=3706;AC=12;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 1110 . c a 17 q30 DP=3688;AC=23;AF=0.0062 SIVmac239M5SpXplasmid_reference_1269-10407 1111 . g a 2 q30 DP=3694;AC=14;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 1111 . g t 4 q30 DP=3694;AC=16;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 1112 . g a 2 q30 DP=3761;AC=14;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 1112 . g t 10 q30 DP=3761;AC=20;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 1113 . g t 3 q30 DP=3762;AC=15;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 1114 . a c 30 PASS DP=3769;AC=28;AF=0.0074 SIVmac239M5SpXplasmid_reference_1269-10407 1114 . a g 1 q30 DP=3769;AC=12;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 1115 . c a 3 q30 DP=3798;AC=15;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 1118 . a c 8 q30 DP=3777;AC=19;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 1118 . a g 3 q30 DP=3777;AC=15;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 1120 . g t 2 q30 DP=3779;AC=14;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 1122 . c a 34 PASS DP=3739;AC=29;AF=0.0078 SIVmac239M5SpXplasmid_reference_1269-10407 1123 . t a 5 q30 DP=3735;AC=17;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 1123 . t c 3 q30 DP=3735;AC=15;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 1123 . t g 12 q30 DP=3735;AC=21;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 1124 . a c 7 q30 DP=3746;AC=18;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 1124 . a g 1 q30 DP=3746;AC=12;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 1126 . a c 21 q30 DP=3782;AC=25;AF=0.0066 SIVmac239M5SpXplasmid_reference_1269-10407 1127 . t a 7 q30 DP=3759;AC=18;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 1127 . t g 33 PASS DP=3759;AC=29;AF=0.0077 SIVmac239M5SpXplasmid_reference_1269-10407 1128 . t a 2 q30 DP=3747;AC=14;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 1128 . t g 37 PASS DP=3747;AC=30;AF=0.0080 SIVmac239M5SpXplasmid_reference_1269-10407 1129 . a c 4 q30 DP=3699;AC=16;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 1131 . t g 27 q30 DP=3602;AC=26;AF=0.0072 SIVmac239M5SpXplasmid_reference_1269-10407 1132 . g a 2 q30 DP=3612;AC=14;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 1132 . g t 3 q30 DP=3612;AC=15;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 1134 . c a 8 q30 DP=3585;AC=18;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 1135 . a c 1 q30 DP=3546;AC=11;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 1136 . g t 1 q30 DP=3549;AC=12;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 1138 . a c 1 q30 DP=3541;AC=11;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 1140 . c a 39 PASS DP=3622;AC=30;AF=0.0083 SIVmac239M5SpXplasmid_reference_1269-10407 1141 . c a 29 q30 DP=3616;AC=27;AF=0.0075 SIVmac239M5SpXplasmid_reference_1269-10407 1141 . c g 2 q30 DP=3616;AC=14;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 1142 . c a 23 q30 DP=3615;AC=25;AF=0.0069 SIVmac239M5SpXplasmid_reference_1269-10407 1143 . t a 2 q30 DP=3597;AC=13;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 1143 . t g 16 q30 DP=3597;AC=22;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 1144 . g t 7 q30 DP=3632;AC=18;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 1145 . a c 13 q30 DP=3655;AC=21;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 1147 . a c 2 q30 DP=3656;AC=13;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 1148 . g t 1 q30 DP=3633;AC=12;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 1149 . a g 8 q30 DP=3516;AC=18;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 1151 . g t 2 q30 DP=3526;AC=13;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 1152 . c a 8 q30 DP=3538;AC=18;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 1152 . c g 7 q30 DP=3538;AC=17;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 1153 . c a 52 PASS DP=3559;AC=33;AF=0.0093 SIVmac239M5SpXplasmid_reference_1269-10407 1153 . c g 1 q30 DP=3559;AC=11;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 1154 . c a 49 PASS DP=3531;AC=32;AF=0.0091 SIVmac239M5SpXplasmid_reference_1269-10407 1155 . t c 2 q30 DP=3549;AC=13;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 1155 . t g 3 q30 DP=3549;AC=14;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 1156 . c a 1 q30 DP=3567;AC=11;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 1158 . c a 72 PASS DP=3620;AC=38;AF=0.0105 SIVmac239M5SpXplasmid_reference_1269-10407 1159 . a c 5 q30 DP=3622;AC=16;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 1160 . c a 100 PASS DP=3613;AC=46;AF=0.0127 SIVmac239M5SpXplasmid_reference_1269-10407 1161 . c a 6 q30 DP=3593;AC=17;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 1162 . a c 4 q30 DP=3499;AC=15;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 1164 . t a 1 q30 DP=3542;AC=12;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 1164 . t g 22 q30 DP=3542;AC=24;AF=0.0068 SIVmac239M5SpXplasmid_reference_1269-10407 1165 . g t 8 q30 DP=3563;AC=18;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 1166 . c a 24 q30 DP=3565;AC=25;AF=0.0070 SIVmac239M5SpXplasmid_reference_1269-10407 1167 . c a 3 q30 DP=3503;AC=14;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 1168 . a c 5 q30 DP=3510;AC=16;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 1170 . t a 1 q30 DP=3507;AC=12;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 1170 . t g 53 PASS DP=3507;AC=33;AF=0.0094 SIVmac239M5SpXplasmid_reference_1269-10407 1171 . c a 25 q30 DP=3529;AC=25;AF=0.0071 SIVmac239M5SpXplasmid_reference_1269-10407 1171 . c t 7 q30 DP=3529;AC=17;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 1172 . c a 85 PASS DP=3495;AC=40;AF=0.0114 SIVmac239M5SpXplasmid_reference_1269-10407 1173 . c a 15 q30 DP=3486;AC=21;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 1174 . t a 4 q30 DP=3476;AC=15;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 1174 . t c 1 q30 DP=3476;AC=12;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 1174 . t g 100 PASS DP=3476;AC=51;AF=0.0147 SIVmac239M5SpXplasmid_reference_1269-10407 1175 . t g 50 PASS DP=3471;AC=32;AF=0.0092 SIVmac239M5SpXplasmid_reference_1269-10407 1176 . t a 1 q30 DP=3473;AC=12;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 1176 . t g 63 PASS DP=3473;AC=35;AF=0.0101 SIVmac239M5SpXplasmid_reference_1269-10407 1177 . t a 2 q30 DP=3455;AC=13;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 1177 . t g 15 q30 DP=3455;AC=21;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 1178 . g t 7 q30 DP=3457;AC=17;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 1179 . c a 20 q30 DP=3464;AC=23;AF=0.0066 SIVmac239M5SpXplasmid_reference_1269-10407 1180 . a c 7 q30 DP=3407;AC=17;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 1181 . g a 3 q30 DP=3414;AC=14;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 1182 . c a 30 PASS DP=3387;AC=26;AF=0.0077 SIVmac239M5SpXplasmid_reference_1269-10407 1183 . a c 24 q30 DP=3370;AC=24;AF=0.0071 SIVmac239M5SpXplasmid_reference_1269-10407 1184 . g a 3 q30 DP=3470;AC=14;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 1185 . c a 29 q30 DP=3441;AC=26;AF=0.0076 SIVmac239M5SpXplasmid_reference_1269-10407 1185 . c g 11 q30 DP=3441;AC=19;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 1186 . c a 51 PASS DP=3448;AC=32;AF=0.0093 SIVmac239M5SpXplasmid_reference_1269-10407 1187 . c a 53 PASS DP=3516;AC=33;AF=0.0094 SIVmac239M5SpXplasmid_reference_1269-10407 1187 . c g 1 q30 DP=3516;AC=12;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 1188 . a c 17 q30 DP=3517;AC=22;AF=0.0063 SIVmac239M5SpXplasmid_reference_1269-10407 1189 . a c 2 q30 DP=3537;AC=13;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 1190 . c a 3 q30 DP=3539;AC=14;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 1191 . a c 17 q30 DP=3528;AC=22;AF=0.0062 SIVmac239M5SpXplasmid_reference_1269-10407 1193 . a c 8 q30 DP=3392;AC=17;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 1193 . a g 37 PASS DP=3392;AC=28;AF=0.0083 SIVmac239M5SpXplasmid_reference_1269-10407 1194 . g a 3 q30 DP=3387;AC=14;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 1194 . g t 1 q30 DP=3387;AC=11;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 1195 . g t 6 q30 DP=3376;AC=16;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 1196 . g t 5 q30 DP=3266;AC=15;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 1197 . g a 1 q30 DP=3324;AC=11;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 1197 . g t 5 q30 DP=3324;AC=15;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 1198 . a c 10 q30 DP=3301;AC=18;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 1199 . c a 59 PASS DP=3294;AC=33;AF=0.0100 SIVmac239M5SpXplasmid_reference_1269-10407 1200 . c a 23 q30 DP=3291;AC=23;AF=0.0070 SIVmac239M5SpXplasmid_reference_1269-10407 1201 . a c 32 PASS DP=3290;AC=26;AF=0.0079 SIVmac239M5SpXplasmid_reference_1269-10407 1202 . a c 10 q30 DP=3289;AC=18;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 1203 . g t 4 q30 DP=3304;AC=14;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 1204 . a c 15 q30 DP=3282;AC=20;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 1205 . a c 2 q30 DP=3243;AC=12;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 1205 . a t 1 q30 DP=3243;AC=11;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 1206 . a c 11 q30 DP=3238;AC=18;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 1207 . g a 1 q30 DP=3276;AC=11;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 1208 . c a 15 q30 DP=3286;AC=20;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 1208 . c g 3 q30 DP=3286;AC=13;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 1209 . c a 32 PASS DP=3273;AC=26;AF=0.0079 SIVmac239M5SpXplasmid_reference_1269-10407 1210 . a c 32 PASS DP=3272;AC=26;AF=0.0079 SIVmac239M5SpXplasmid_reference_1269-10407 1211 . a c 26 q30 DP=3282;AC=24;AF=0.0073 SIVmac239M5SpXplasmid_reference_1269-10407 1212 . t a 17 q30 DP=3285;AC=21;AF=0.0064 SIVmac239M5SpXplasmid_reference_1269-10407 1212 . t c 5 q30 DP=3285;AC=15;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 1212 . t g 64 PASS DP=3285;AC=34;AF=0.0104 SIVmac239M5SpXplasmid_reference_1269-10407 1213 . t a 20 q30 DP=3292;AC=22;AF=0.0067 SIVmac239M5SpXplasmid_reference_1269-10407 1213 . t c 7 q30 DP=3292;AC=16;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 1213 . t g 51 PASS DP=3292;AC=31;AF=0.0094 SIVmac239M5SpXplasmid_reference_1269-10407 1214 . a c 29 q30 DP=3299;AC=25;AF=0.0076 SIVmac239M5SpXplasmid_reference_1269-10407 1214 . a t 3 q30 DP=3299;AC=13;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 1215 . a c 29 q30 DP=3279;AC=25;AF=0.0076 SIVmac239M5SpXplasmid_reference_1269-10407 1216 . g t 5 q30 DP=3341;AC=15;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 1217 . t a 12 q30 DP=3339;AC=19;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 1217 . t c 4 q30 DP=3339;AC=14;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 1217 . t g 100 PASS DP=3339;AC=42;AF=0.0126 SIVmac239M5SpXplasmid_reference_1269-10407 1218 . g t 1 q30 DP=3348;AC=11;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 1219 . t a 10 q30 DP=3336;AC=18;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 1219 . t c 1 q30 DP=3336;AC=11;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 1219 . t g 38 PASS DP=3336;AC=28;AF=0.0084 SIVmac239M5SpXplasmid_reference_1269-10407 1220 . t c 2 q30 DP=3331;AC=12;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 1220 . t g 10 q30 DP=3331;AC=18;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 1221 . g t 3 q30 DP=3331;AC=13;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 1222 . g a 1 q30 DP=3346;AC=11;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 1222 . g t 6 q30 DP=3346;AC=16;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 1223 . a c 10 q30 DP=3343;AC=18;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 1224 . a c 10 q30 DP=3328;AC=18;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 1225 . t a 20 q30 DP=3299;AC=22;AF=0.0067 SIVmac239M5SpXplasmid_reference_1269-10407 1225 . t c 1 q30 DP=3299;AC=11;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 1225 . t g 92 PASS DP=3299;AC=40;AF=0.0121 SIVmac239M5SpXplasmid_reference_1269-10407 1226 . t g 36 PASS DP=3257;AC=27;AF=0.0083 SIVmac239M5SpXplasmid_reference_1269-10407 1228 . t a 5 q30 DP=3260;AC=15;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 1228 . t c 2 q30 DP=3260;AC=12;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 1228 . t g 47 PASS DP=3260;AC=30;AF=0.0092 SIVmac239M5SpXplasmid_reference_1269-10407 1229 . g a 3 q30 DP=3262;AC=13;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 1229 . g t 20 q30 DP=3262;AC=22;AF=0.0067 SIVmac239M5SpXplasmid_reference_1269-10407 1230 . g t 2 q30 DP=3247;AC=12;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 1232 . a c 7 q30 DP=3240;AC=16;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 1233 . a c 1 q30 DP=3270;AC=10;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 1234 . a c 3 q30 DP=3256;AC=13;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 1236 . a c 4 q30 DP=3285;AC=14;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 1236 . a g 12 q30 DP=3285;AC=19;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 1239 . g t 22 q30 DP=3300;AC=23;AF=0.0070 SIVmac239M5SpXplasmid_reference_1269-10407 1241 . c a 15 q30 DP=3290;AC=20;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 1242 . a c 2 q30 DP=3249;AC=12;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 1242 . a g 1 q30 DP=3249;AC=10;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 1243 . c a 77 PASS DP=3303;AC=37;AF=0.0112 SIVmac239M5SpXplasmid_reference_1269-10407 1244 . t a 26 q30 DP=3240;AC=24;AF=0.0074 SIVmac239M5SpXplasmid_reference_1269-10407 1244 . t c 15 q30 DP=3240;AC=20;AF=0.0062 SIVmac239M5SpXplasmid_reference_1269-10407 1244 . t g 18 q30 DP=3240;AC=21;AF=0.0065 SIVmac239M5SpXplasmid_reference_1269-10407 1245 . c a 15 q30 DP=3480;AC=21;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 1246 . t a 3 q30 DP=3478;AC=14;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 1246 . t g 9 q30 DP=3478;AC=18;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 1248 . c a 62 PASS DP=3486;AC=35;AF=0.0100 SIVmac239M5SpXplasmid_reference_1269-10407 1249 . a c 1 q30 DP=3475;AC=12;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 1252 . g a 1 q30 DP=3533;AC=11;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 1252 . g t 10 q30 DP=3533;AC=19;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 1253 . c a 45 PASS DP=3524;AC=31;AF=0.0088 SIVmac239M5SpXplasmid_reference_1269-10407 1253 . c g 3 q30 DP=3524;AC=14;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 1256 . t g 6 q30 DP=3375;AC=16;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 1258 . c a 9 q30 DP=3419;AC=18;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 1261 . a c 1 q30 DP=3303;AC=11;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 1261 . a g 32 PASS DP=3303;AC=26;AF=0.0079 SIVmac239M5SpXplasmid_reference_1269-10407 1263 . c a 21 q30 DP=3397;AC=23;AF=0.0068 SIVmac239M5SpXplasmid_reference_1269-10407 1263 . c g 5 q30 DP=3397;AC=15;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 1264 . c a 74 PASS DP=3415;AC=37;AF=0.0108 SIVmac239M5SpXplasmid_reference_1269-10407 1264 . c t 1 q30 DP=3415;AC=12;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 1265 . c a 11 q30 DP=3414;AC=19;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 1265 . c t 2 q30 DP=3414;AC=13;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 1266 . c a 39 PASS DP=3465;AC=29;AF=0.0084 SIVmac239M5SpXplasmid_reference_1269-10407 1268 . a c 1 q30 DP=3441;AC=11;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 1269 . g t 2 q30 DP=3479;AC=13;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 1270 . a c 2 q30 DP=3473;AC=13;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 1270 . a g 5 q30 DP=3473;AC=16;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 1271 . a c 1 q30 DP=3409;AC=11;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 1271 . a g 2 q30 DP=3409;AC=13;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 1273 . a g 30 PASS DP=3382;AC=26;AF=0.0077 SIVmac239M5SpXplasmid_reference_1269-10407 1274 . c a 41 PASS DP=3392;AC=29;AF=0.0085 SIVmac239M5SpXplasmid_reference_1269-10407 1276 . g t 6 q30 DP=3349;AC=16;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 1277 . g t 21 q30 DP=3364;AC=23;AF=0.0068 SIVmac239M5SpXplasmid_reference_1269-10407 1279 . a c 1 q30 DP=3354;AC=11;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 1280 . t g 14 q30 DP=3351;AC=20;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 1282 . c a 5 q30 DP=3352;AC=15;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 1283 . t a 2 q30 DP=3356;AC=13;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 1283 . t g 10 q30 DP=3356;AC=18;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 1285 . g t 5 q30 DP=3349;AC=15;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 1286 . a c 6 q30 DP=3354;AC=16;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 1286 . a g 1 q30 DP=3354;AC=11;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 1287 . a c 12 q30 DP=3345;AC=19;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 1289 . t g 42 PASS DP=3310;AC=29;AF=0.0088 SIVmac239M5SpXplasmid_reference_1269-10407 1291 . t a 1 q30 DP=3314;AC=11;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 1291 . t g 10 q30 DP=3314;AC=18;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 1292 . g t 2 q30 DP=3284;AC=12;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 1294 . a t 3 q30 DP=3301;AC=13;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 1295 . a g 1 q30 DP=3346;AC=11;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 1299 . t g 10 q30 DP=3292;AC=18;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 1300 . g t 2 q30 DP=3299;AC=12;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 1303 . c a 5 q30 DP=3342;AC=15;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 1304 . c a 5 q30 DP=3308;AC=15;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 1304 . c g 3 q30 DP=3308;AC=13;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 1305 . a c 5 q30 DP=3353;AC=15;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 1306 . t g 13 q30 DP=3424;AC=20;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 1308 . t c 1 q30 DP=3540;AC=11;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 1308 . t g 4 q30 DP=3540;AC=15;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 1309 . t g 14 q30 DP=3549;AC=21;AF=0.0059 SIVmac239M5SpXplasmid_reference_1269-10407 1311 . t g 1 q30 DP=3522;AC=12;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 1312 . g t 12 q30 DP=3521;AC=20;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 1313 . g a 1 q30 DP=3539;AC=11;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 1313 . g t 1 q30 DP=3539;AC=11;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 1314 . c a 5 q30 DP=3514;AC=16;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 1315 . c a 39 PASS DP=3467;AC=29;AF=0.0084 SIVmac239M5SpXplasmid_reference_1269-10407 1318 . a c 2 q30 DP=3371;AC=13;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 1319 . t g 3 q30 DP=3437;AC=14;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 1321 . c a 12 q30 DP=3493;AC=20;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 1322 . c a 3 q30 DP=3494;AC=14;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 1322 . c t 1 q30 DP=3494;AC=12;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 1323 . c a 3 q30 DP=3504;AC=14;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 1324 . a g 5 q30 DP=3516;AC=16;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 1326 . a c 5 q30 DP=3518;AC=16;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 1326 . a g 3 q30 DP=3518;AC=14;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 1327 . c a 1 q30 DP=3528;AC=11;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 1328 . a c 1 q30 DP=3455;AC=11;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 1328 . a g 1 q30 DP=3455;AC=11;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 1330 . a g 13 q30 DP=3460;AC=20;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 1331 . c a 1 q30 DP=3468;AC=11;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 1332 . a c 1 q30 DP=3455;AC=12;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 1332 . a g 1 q30 DP=3455;AC=12;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 1333 . g t 13 q30 DP=3469;AC=20;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 1334 . g t 7 q30 DP=3461;AC=17;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 1335 . c a 1 q30 DP=3458;AC=12;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 1336 . g t 23 q30 DP=3447;AC=24;AF=0.0070 SIVmac239M5SpXplasmid_reference_1269-10407 1337 . g t 32 PASS DP=3467;AC=27;AF=0.0078 SIVmac239M5SpXplasmid_reference_1269-10407 1338 . g t 17 q30 DP=3475;AC=22;AF=0.0063 SIVmac239M5SpXplasmid_reference_1269-10407 1339 . t a 100 PASS DP=3439;AC=43;AF=0.0125 SIVmac239M5SpXplasmid_reference_1269-10407 1339 . t c 15 q30 DP=3439;AC=21;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 1339 . t g 100 PASS DP=3439;AC=85;AF=0.0247 SIVmac239M5SpXplasmid_reference_1269-10407 1340 . t a 11 q30 DP=3447;AC=19;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 1340 . t g 43 PASS DP=3447;AC=30;AF=0.0087 SIVmac239M5SpXplasmid_reference_1269-10407 1341 . t a 3 q30 DP=3515;AC=14;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 1341 . t g 22 q30 DP=3515;AC=24;AF=0.0068 SIVmac239M5SpXplasmid_reference_1269-10407 1342 . t g 22 q30 DP=3509;AC=24;AF=0.0068 SIVmac239M5SpXplasmid_reference_1269-10407 1343 . t g 31 PASS DP=3517;AC=27;AF=0.0077 SIVmac239M5SpXplasmid_reference_1269-10407 1344 . t g 19 q30 DP=3516;AC=23;AF=0.0065 SIVmac239M5SpXplasmid_reference_1269-10407 1345 . a c 2 q30 DP=3506;AC=13;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 1345 . a t 4 q30 DP=3506;AC=15;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 1346 . g a 38 PASS DP=3504;AC=29;AF=0.0083 SIVmac239M5SpXplasmid_reference_1269-10407 1346 . g c 7 q30 DP=3504;AC=17;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 1346 . g t 22 q30 DP=3504;AC=24;AF=0.0068 SIVmac239M5SpXplasmid_reference_1269-10407 1347 . g a 4 q30 DP=3529;AC=15;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 1347 . g t 41 PASS DP=3529;AC=30;AF=0.0085 SIVmac239M5SpXplasmid_reference_1269-10407 1348 . c a 31 PASS DP=3527;AC=27;AF=0.0077 SIVmac239M5SpXplasmid_reference_1269-10407 1348 . c g 3 q30 DP=3527;AC=14;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 1348 . c t 4 q30 DP=3527;AC=15;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 1349 . c a 8 q30 DP=3525;AC=18;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 1350 . t c 39 PASS DP=3470;AC=29;AF=0.0084 SIVmac239M5SpXplasmid_reference_1269-10407 1350 . t g 39 PASS DP=3470;AC=29;AF=0.0084 SIVmac239M5SpXplasmid_reference_1269-10407 1351 . t g 2 q30 DP=3468;AC=13;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 1352 . g t 100 PASS DP=3506;AC=50;AF=0.0143 SIVmac239M5SpXplasmid_reference_1269-10407 1353 . g t 8 q30 DP=3571;AC=18;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 1354 . t g 78 PASS DP=3571;AC=39;AF=0.0109 SIVmac239M5SpXplasmid_reference_1269-10407 1355 . c a 14 q30 DP=3574;AC=21;AF=0.0059 SIVmac239M5SpXplasmid_reference_1269-10407 1355 . c g 2 q30 DP=3574;AC=13;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 1355 . c t 100 PASS DP=3574;AC=45;AF=0.0126 SIVmac239M5SpXplasmid_reference_1269-10407 1356 . c a 12 q30 DP=3530;AC=20;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 1356 . c g 1 q30 DP=3530;AC=11;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 1356 . c t 3 q30 DP=3530;AC=14;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 1357 . a c 99 PASS DP=3529;AC=43;AF=0.0122 SIVmac239M5SpXplasmid_reference_1269-10407 1357 . a g 2 q30 DP=3529;AC=13;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 1358 . t a 1 q30 DP=3521;AC=11;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 1358 . t g 5 q30 DP=3521;AC=16;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 1359 . g t 65 PASS DP=3551;AC=36;AF=0.0101 SIVmac239M5SpXplasmid_reference_1269-10407 1360 . g t 16 q30 DP=3579;AC=22;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 1361 . g t 3 q30 DP=3584;AC=14;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 1362 . g a 1 q30 DP=3568;AC=11;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 1362 . g t 6 q30 DP=3568;AC=17;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 1363 . a c 65 PASS DP=3543;AC=36;AF=0.0102 SIVmac239M5SpXplasmid_reference_1269-10407 1363 . a g 49 PASS DP=3543;AC=32;AF=0.0090 SIVmac239M5SpXplasmid_reference_1269-10407 1363 . a t 10 q30 DP=3543;AC=19;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 1364 . a c 18 q30 DP=3594;AC=23;AF=0.0064 SIVmac239M5SpXplasmid_reference_1269-10407 1364 . a t 3 q30 DP=3594;AC=14;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 1366 . g a 1 q30 DP=3581;AC=12;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 1367 . a c 12 q30 DP=3567;AC=20;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 1367 . a g 10 q30 DP=3567;AC=19;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 1368 . a c 1 q30 DP=3517;AC=12;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 1368 . a g 8 q30 DP=3517;AC=18;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 1369 . g a 25 q30 DP=3516;AC=25;AF=0.0071 SIVmac239M5SpXplasmid_reference_1269-10407 1369 . g t 8 q30 DP=3516;AC=18;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 1370 . c a 42 PASS DP=3513;AC=30;AF=0.0085 SIVmac239M5SpXplasmid_reference_1269-10407 1370 . c g 1 q30 DP=3513;AC=11;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 1371 . c a 20 q30 DP=3476;AC=23;AF=0.0066 SIVmac239M5SpXplasmid_reference_1269-10407 1372 . c a 54 PASS DP=3476;AC=33;AF=0.0095 SIVmac239M5SpXplasmid_reference_1269-10407 1372 . c t 1 q30 DP=3476;AC=11;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 1373 . c a 15 q30 DP=3454;AC=21;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 1374 . g c 3 q30 DP=3496;AC=14;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 1374 . g t 3 q30 DP=3496;AC=14;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 1375 . c a 12 q30 DP=3531;AC=20;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 1375 . c g 1 q30 DP=3531;AC=12;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 1376 . a c 100 PASS DP=3554;AC=44;AF=0.0124 SIVmac239M5SpXplasmid_reference_1269-10407 1376 . a g 6 q30 DP=3554;AC=17;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 1377 . a c 12 q30 DP=3567;AC=20;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 1378 . t a 12 q30 DP=3566;AC=20;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 1378 . t g 37 PASS DP=3566;AC=29;AF=0.0081 SIVmac239M5SpXplasmid_reference_1269-10407 1379 . t a 3 q30 DP=3570;AC=14;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 1379 . t g 100 PASS DP=3570;AC=48;AF=0.0134 SIVmac239M5SpXplasmid_reference_1269-10407 1380 . t a 4 q30 DP=3574;AC=15;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 1380 . t g 100 PASS DP=3574;AC=50;AF=0.0140 SIVmac239M5SpXplasmid_reference_1269-10407 1381 . c a 6 q30 DP=3594;AC=17;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 1381 . c t 5 q30 DP=3594;AC=16;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 1382 . c a 47 PASS DP=3594;AC=32;AF=0.0089 SIVmac239M5SpXplasmid_reference_1269-10407 1382 . c t 6 q30 DP=3594;AC=17;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 1383 . c a 33 PASS DP=3609;AC=28;AF=0.0078 SIVmac239M5SpXplasmid_reference_1269-10407 1384 . c a 89 PASS DP=3545;AC=41;AF=0.0116 SIVmac239M5SpXplasmid_reference_1269-10407 1384 . c g 1 q30 DP=3545;AC=12;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 1385 . a c 79 PASS DP=3542;AC=39;AF=0.0110 SIVmac239M5SpXplasmid_reference_1269-10407 1385 . a t 1 q30 DP=3542;AC=12;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 1386 . t a 1 q30 DP=3567;AC=12;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 1386 . t g 5 q30 DP=3567;AC=16;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 1387 . g t 60 PASS DP=3574;AC=35;AF=0.0098 SIVmac239M5SpXplasmid_reference_1269-10407 1388 . g t 2 q30 DP=3670;AC=14;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 1389 . c a 9 q30 DP=3665;AC=19;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 1389 . c t 1 q30 DP=3665;AC=12;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 1390 . t a 6 q30 DP=3643;AC=17;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 1390 . t c 100 PASS DP=3643;AC=80;AF=0.0220 SIVmac239M5SpXplasmid_reference_1269-10407 1390 . t g 15 q30 DP=3643;AC=22;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 1391 . c a 23 q30 DP=3655;AC=25;AF=0.0068 SIVmac239M5SpXplasmid_reference_1269-10407 1391 . c g 2 q30 DP=3655;AC=13;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 1392 . a c 94 PASS DP=3662;AC=43;AF=0.0117 SIVmac239M5SpXplasmid_reference_1269-10407 1394 . g a 14 q30 DP=3748;AC=22;AF=0.0059 SIVmac239M5SpXplasmid_reference_1269-10407 1394 . g t 5 q30 DP=3748;AC=17;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 1395 . t c 1 q30 DP=3733;AC=12;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 1395 . t g 44 PASS DP=3733;AC=32;AF=0.0086 SIVmac239M5SpXplasmid_reference_1269-10407 1396 . g t 52 PASS DP=3716;AC=34;AF=0.0091 SIVmac239M5SpXplasmid_reference_1269-10407 1397 . c a 1 q30 DP=3705;AC=13;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 1398 . a c 48 PASS DP=3730;AC=33;AF=0.0088 SIVmac239M5SpXplasmid_reference_1269-10407 1398 . a g 1 q30 DP=3730;AC=13;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 1399 . t a 37 PASS DP=3741;AC=30;AF=0.0080 SIVmac239M5SpXplasmid_reference_1269-10407 1399 . t c 1 q30 DP=3741;AC=13;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 1399 . t g 52 PASS DP=3741;AC=34;AF=0.0091 SIVmac239M5SpXplasmid_reference_1269-10407 1400 . c a 27 q30 DP=3737;AC=27;AF=0.0072 SIVmac239M5SpXplasmid_reference_1269-10407 1400 . c t 8 q30 DP=3737;AC=19;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 1401 . a c 100 PASS DP=3726;AC=56;AF=0.0150 SIVmac239M5SpXplasmid_reference_1269-10407 1401 . a g 1 q30 DP=3726;AC=12;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 1401 . a t 19 q30 DP=3726;AC=24;AF=0.0064 SIVmac239M5SpXplasmid_reference_1269-10407 1402 . g a 9 q30 DP=3723;AC=19;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 1402 . g t 2 q30 DP=3723;AC=14;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 1403 . g t 6 q30 DP=3703;AC=17;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 1404 . g a 14 q30 DP=3732;AC=22;AF=0.0059 SIVmac239M5SpXplasmid_reference_1269-10407 1404 . g t 3 q30 DP=3732;AC=15;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 1405 . g t 3 q30 DP=3811;AC=15;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 1406 . c a 40 PASS DP=3769;AC=31;AF=0.0082 SIVmac239M5SpXplasmid_reference_1269-10407 1407 . t a 6 q30 DP=3705;AC=17;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 1407 . t c 7 q30 DP=3705;AC=18;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 1407 . t g 57 PASS DP=3705;AC=35;AF=0.0094 SIVmac239M5SpXplasmid_reference_1269-10407 1408 . g t 10 q30 DP=3777;AC=20;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 1409 . a c 10 q30 DP=3808;AC=20;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 1409 . a g 1 q30 DP=3808;AC=12;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 1410 . t a 32 PASS DP=3813;AC=29;AF=0.0076 SIVmac239M5SpXplasmid_reference_1269-10407 1410 . t g 16 q30 DP=3813;AC=23;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 1411 . g t 13 q30 DP=3823;AC=22;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 1412 . c a 84 PASS DP=3822;AC=42;AF=0.0110 SIVmac239M5SpXplasmid_reference_1269-10407 1412 . c g 5 q30 DP=3822;AC=17;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 1413 . c a 32 PASS DP=3838;AC=29;AF=0.0076 SIVmac239M5SpXplasmid_reference_1269-10407 1413 . c g 2 q30 DP=3838;AC=14;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 1414 . a c 94 PASS DP=3828;AC=44;AF=0.0115 SIVmac239M5SpXplasmid_reference_1269-10407 1415 . a c 6 q30 DP=3848;AC=18;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 1415 . a g 2 q30 DP=3848;AC=14;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 1416 . c a 28 q30 DP=3874;AC=28;AF=0.0072 SIVmac239M5SpXplasmid_reference_1269-10407 1417 . t c 26 q30 DP=3803;AC=27;AF=0.0071 SIVmac239M5SpXplasmid_reference_1269-10407 1417 . t g 50 PASS DP=3803;AC=34;AF=0.0089 SIVmac239M5SpXplasmid_reference_1269-10407 1418 . g a 1 q30 DP=3840;AC=13;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 1418 . g t 4 q30 DP=3840;AC=16;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 1419 . c a 20 q30 DP=3840;AC=25;AF=0.0065 SIVmac239M5SpXplasmid_reference_1269-10407 1419 . c g 3 q30 DP=3840;AC=15;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 1420 . t a 23 q30 DP=3864;AC=26;AF=0.0067 SIVmac239M5SpXplasmid_reference_1269-10407 1420 . t c 100 PASS DP=3864;AC=63;AF=0.0163 SIVmac239M5SpXplasmid_reference_1269-10407 1420 . t g 100 PASS DP=3864;AC=46;AF=0.0119 SIVmac239M5SpXplasmid_reference_1269-10407 1421 . c a 34 PASS DP=3922;AC=30;AF=0.0076 SIVmac239M5SpXplasmid_reference_1269-10407 1421 . c t 4 q30 DP=3922;AC=17;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 1422 . c a 34 PASS DP=3926;AC=30;AF=0.0076 SIVmac239M5SpXplasmid_reference_1269-10407 1422 . c g 4 q30 DP=3926;AC=17;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 1423 . c a 54 PASS DP=3985;AC=36;AF=0.0090 SIVmac239M5SpXplasmid_reference_1269-10407 1423 . c g 2 q30 DP=3985;AC=15;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 1424 . c a 49 PASS DP=4041;AC=35;AF=0.0087 SIVmac239M5SpXplasmid_reference_1269-10407 1425 . c a 5 q30 DP=4071;AC=18;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 1426 . a c 100 PASS DP=4076;AC=59;AF=0.0145 SIVmac239M5SpXplasmid_reference_1269-10407 1427 . g a 1 q30 DP=4068;AC=13;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 1427 . g c 4 q30 DP=4068;AC=17;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 1427 . g t 8 q30 DP=4068;AC=20;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 1428 . a c 31 PASS DP=4054;AC=30;AF=0.0074 SIVmac239M5SpXplasmid_reference_1269-10407 1428 . a g 1 q30 DP=4054;AC=13;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 1428 . a t 1 q30 DP=4054;AC=14;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 1429 . g a 4 q30 DP=4083;AC=17;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 1429 . g t 4 q30 DP=4083;AC=17;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 1430 . g t 1 q30 DP=4040;AC=13;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 1431 . a c 29 q30 DP=4029;AC=29;AF=0.0072 SIVmac239M5SpXplasmid_reference_1269-10407 1432 . c a 96 PASS DP=4034;AC=46;AF=0.0114 SIVmac239M5SpXplasmid_reference_1269-10407 1432 . c g 4 q30 DP=4034;AC=17;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 1433 . c a 3 q30 DP=3997;AC=16;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 1434 . c a 35 PASS DP=4006;AC=31;AF=0.0077 SIVmac239M5SpXplasmid_reference_1269-10407 1434 . c g 1 q30 DP=4006;AC=13;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 1435 . a c 62 PASS DP=3962;AC=38;AF=0.0096 SIVmac239M5SpXplasmid_reference_1269-10407 1435 . a g 2 q30 DP=3962;AC=15;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 1437 . c a 20 q30 DP=4068;AC=26;AF=0.0064 SIVmac239M5SpXplasmid_reference_1269-10407 1437 . c g 1 q30 DP=4068;AC=13;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 1438 . t a 18 q30 DP=4036;AC=25;AF=0.0062 SIVmac239M5SpXplasmid_reference_1269-10407 1438 . t c 26 q30 DP=4036;AC=28;AF=0.0069 SIVmac239M5SpXplasmid_reference_1269-10407 1438 . t g 78 PASS DP=4036;AC=42;AF=0.0104 SIVmac239M5SpXplasmid_reference_1269-10407 1439 . g t 2 q30 DP=4038;AC=15;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 1440 . t a 5 q30 DP=4022;AC=18;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 1440 . t g 87 PASS DP=4022;AC=44;AF=0.0109 SIVmac239M5SpXplasmid_reference_1269-10407 1441 . g a 6 q30 DP=4034;AC=19;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 1441 . g t 82 PASS DP=4034;AC=43;AF=0.0107 SIVmac239M5SpXplasmid_reference_1269-10407 1442 . g t 6 q30 DP=4035;AC=19;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 1443 . a c 19 q30 DP=3983;AC=25;AF=0.0063 SIVmac239M5SpXplasmid_reference_1269-10407 1443 . a t 1 q30 DP=3983;AC=14;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 1444 . t a 33 PASS DP=3974;AC=30;AF=0.0075 SIVmac239M5SpXplasmid_reference_1269-10407 1444 . t g 89 PASS DP=3974;AC=44;AF=0.0111 SIVmac239M5SpXplasmid_reference_1269-10407 1445 . c a 42 PASS DP=3844;AC=32;AF=0.0083 SIVmac239M5SpXplasmid_reference_1269-10407 1446 . t c 3 q30 DP=3818;AC=15;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 1446 . t g 1 q30 DP=3818;AC=13;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 1447 . g t 1 q30 DP=3965;AC=14;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 1448 . c a 16 q30 DP=3985;AC=24;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 1449 . t c 12 q30 DP=3976;AC=22;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 1449 . t g 27 q30 DP=3976;AC=28;AF=0.0070 SIVmac239M5SpXplasmid_reference_1269-10407 1450 . a c 10 q30 DP=3992;AC=21;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 1452 . a c 4 q30 DP=3985;AC=17;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 1453 . g a 1 q30 DP=4054;AC=13;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 1453 . g t 2 q30 DP=4054;AC=15;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 1454 . a c 9 q30 DP=4069;AC=21;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 1456 . c a 16 q30 DP=4170;AC=25;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 1457 . t g 100 PASS DP=4101;AC=52;AF=0.0127 SIVmac239M5SpXplasmid_reference_1269-10407 1458 . a c 2 q30 DP=4195;AC=16;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 1459 . c a 35 PASS DP=4193;AC=32;AF=0.0076 SIVmac239M5SpXplasmid_reference_1269-10407 1460 . a c 29 q30 DP=4213;AC=30;AF=0.0071 SIVmac239M5SpXplasmid_reference_1269-10407 1461 . t a 5 q30 DP=4219;AC=19;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 1461 . t g 100 PASS DP=4219;AC=48;AF=0.0114 SIVmac239M5SpXplasmid_reference_1269-10407 1462 . g t 9 q30 DP=4175;AC=21;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 1464 . a c 81 PASS DP=4216;AC=44;AF=0.0104 SIVmac239M5SpXplasmid_reference_1269-10407 1466 . t a 12 q30 DP=4243;AC=23;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 1466 . t c 4 q30 DP=4243;AC=18;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 1466 . t g 100 PASS DP=4243;AC=49;AF=0.0115 SIVmac239M5SpXplasmid_reference_1269-10407 1467 . t a 1 q30 DP=4218;AC=15;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 1467 . t g 21 q30 DP=4218;AC=27;AF=0.0064 SIVmac239M5SpXplasmid_reference_1269-10407 1468 . g a 8 q30 DP=4235;AC=21;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 1468 . g t 7 q30 DP=4235;AC=20;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 1469 . g a 14 q30 DP=4236;AC=24;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 1469 . g t 4 q30 DP=4236;AC=18;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 1470 . g t 8 q30 DP=4242;AC=21;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 1471 . c a 16 q30 DP=4256;AC=25;AF=0.0059 SIVmac239M5SpXplasmid_reference_1269-10407 1471 . c g 3 q30 DP=4256;AC=17;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 1472 . a c 4 q30 DP=4247;AC=18;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 1475 . c a 44 PASS DP=4267;AC=35;AF=0.0082 SIVmac239M5SpXplasmid_reference_1269-10407 1475 . c g 1 q30 DP=4267;AC=14;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 1476 . a c 16 q30 DP=4252;AC=25;AF=0.0059 SIVmac239M5SpXplasmid_reference_1269-10407 1478 . c a 13 q30 DP=4321;AC=24;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 1478 . c g 4 q30 DP=4321;AC=18;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 1479 . a c 17 q30 DP=4308;AC=26;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 1479 . a t 1 q30 DP=4308;AC=15;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 1480 . g t 1 q30 DP=4308;AC=14;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 1481 . a c 13 q30 DP=4288;AC=24;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 1481 . a g 1 q30 DP=4288;AC=14;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 1482 . g a 1 q30 DP=4359;AC=15;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 1483 . a c 4 q30 DP=4343;AC=18;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 1483 . a g 1 q30 DP=4343;AC=15;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 1484 . g t 2 q30 DP=4362;AC=16;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 1485 . a c 1 q30 DP=4366;AC=14;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 1487 . a c 6 q30 DP=4345;AC=20;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 1487 . a g 6 q30 DP=4345;AC=20;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 1490 . c a 9 q30 DP=4355;AC=22;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 1491 . a c 5 q30 DP=4310;AC=19;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 1493 . a c 6 q30 DP=4328;AC=20;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 1493 . a g 1 q30 DP=4328;AC=15;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 1493 . a t 2 q30 DP=4328;AC=16;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 1494 . g a 2 q30 DP=4362;AC=16;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 1494 . g t 1 q30 DP=4362;AC=14;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 1495 . a c 3 q30 DP=4358;AC=17;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 1496 . g t 3 q30 DP=4371;AC=17;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 1497 . a c 1 q30 DP=4396;AC=14;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 1497 . a t 1 q30 DP=4396;AC=14;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 1498 . a c 6 q30 DP=4404;AC=20;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 1498 . a g 6 q30 DP=4404;AC=20;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 1498 . a t 1 q30 DP=4404;AC=15;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 1499 . a c 1 q30 DP=4412;AC=14;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 1501 . c a 6 q30 DP=4427;AC=20;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 1503 . g t 4 q30 DP=4406;AC=19;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 1504 . a g 6 q30 DP=4393;AC=20;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 1505 . g t 12 q30 DP=4394;AC=24;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 1507 . g t 3 q30 DP=4339;AC=17;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 1508 . a g 1 q30 DP=4330;AC=14;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 1508 . a t 1 q30 DP=4330;AC=15;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 1509 . a g 6 q30 DP=4277;AC=20;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 1510 . g t 3 q30 DP=4376;AC=18;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 1511 . c a 29 q30 DP=4414;AC=31;AF=0.0070 SIVmac239M5SpXplasmid_reference_1269-10407 1511 . c g 1 q30 DP=4414;AC=15;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 1512 . c a 5 q30 DP=4442;AC=20;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 1513 . t a 2 q30 DP=4428;AC=17;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 1513 . t g 48 PASS DP=4428;AC=37;AF=0.0084 SIVmac239M5SpXplasmid_reference_1269-10407 1514 . t g 10 q30 DP=4426;AC=23;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 1516 . c a 1 q30 DP=4486;AC=15;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 1522 . g t 3 q30 DP=4231;AC=17;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 1524 . t a 2 q30 DP=4196;AC=16;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 1524 . t g 7 q30 DP=4196;AC=20;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 1525 . g t 3 q30 DP=4211;AC=17;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 1527 . c a 2 q30 DP=4216;AC=16;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 1529 . g t 2 q30 DP=4146;AC=16;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 1530 . a c 2 q30 DP=4115;AC=15;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 1531 . g t 1 q30 DP=4125;AC=14;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 1532 . g a 3 q30 DP=4104;AC=16;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 1532 . g t 6 q30 DP=4104;AC=19;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 1534 . t a 8 q30 DP=4066;AC=20;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 1534 . t g 9 q30 DP=4066;AC=21;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 1535 . t g 3 q30 DP=4062;AC=16;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 1536 . t g 2 q30 DP=4059;AC=15;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 1537 . g t 1 q30 DP=4052;AC=13;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 1541 . c a 67 PASS DP=3956;AC=39;AF=0.0099 SIVmac239M5SpXplasmid_reference_1269-10407 1541 . c t 1 q30 DP=3956;AC=13;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 1543 . c a 35 PASS DP=4025;AC=31;AF=0.0077 SIVmac239M5SpXplasmid_reference_1269-10407 1544 . c a 26 q30 DP=4005;AC=28;AF=0.0070 SIVmac239M5SpXplasmid_reference_1269-10407 1545 . t a 2 q30 DP=4005;AC=15;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 1545 . t g 18 q30 DP=4005;AC=25;AF=0.0062 SIVmac239M5SpXplasmid_reference_1269-10407 1546 . c a 18 q30 DP=4036;AC=25;AF=0.0062 SIVmac239M5SpXplasmid_reference_1269-10407 1549 . t g 21 q30 DP=4029;AC=26;AF=0.0065 SIVmac239M5SpXplasmid_reference_1269-10407 1550 . t a 6 q30 DP=4034;AC=19;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 1550 . t g 26 q30 DP=4034;AC=28;AF=0.0069 SIVmac239M5SpXplasmid_reference_1269-10407 1551 . c a 4 q30 DP=4028;AC=17;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 1552 . t a 10 q30 DP=3943;AC=21;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 1552 . t g 55 PASS DP=3943;AC=36;AF=0.0091 SIVmac239M5SpXplasmid_reference_1269-10407 1554 . t a 19 q30 DP=3948;AC=25;AF=0.0063 SIVmac239M5SpXplasmid_reference_1269-10407 1554 . t g 51 PASS DP=3948;AC=35;AF=0.0089 SIVmac239M5SpXplasmid_reference_1269-10407 1555 . c a 1 q30 DP=4080;AC=14;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 1556 . t a 1 q30 DP=4059;AC=14;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 1556 . t g 18 q30 DP=4059;AC=25;AF=0.0062 SIVmac239M5SpXplasmid_reference_1269-10407 1557 . t a 1 q30 DP=4064;AC=14;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 1557 . t g 15 q30 DP=4064;AC=24;AF=0.0059 SIVmac239M5SpXplasmid_reference_1269-10407 1558 . t g 3 q30 DP=4049;AC=16;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 1562 . g a 1 q30 DP=4015;AC=14;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 1562 . g t 8 q30 DP=4015;AC=20;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 1565 . g t 3 q30 DP=4029;AC=16;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 1567 . c a 3 q30 DP=4103;AC=16;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 1568 . c a 40 PASS DP=4121;AC=33;AF=0.0080 SIVmac239M5SpXplasmid_reference_1269-10407 1571 . t g 3 q30 DP=4196;AC=17;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 1574 . t g 6 q30 DP=4140;AC=19;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 1575 . c a 19 q30 DP=4122;AC=26;AF=0.0063 SIVmac239M5SpXplasmid_reference_1269-10407 1577 . c a 4 q30 DP=4057;AC=17;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 1578 . t g 1 q30 DP=4018;AC=14;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 1582 . c a 3 q30 DP=4076;AC=16;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 1592 . g t 2 q30 DP=4090;AC=15;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 1596 . g t 2 q30 DP=4099;AC=15;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 1597 . c a 9 q30 DP=4081;AC=21;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 1598 . c a 2 q30 DP=4182;AC=15;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 1600 . g t 2 q30 DP=4247;AC=16;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 1601 . t g 1 q30 DP=4242;AC=14;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 1622 . g t 10 q30 DP=4025;AC=21;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 1623 . g t 2 q30 DP=3921;AC=14;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 1625 . c a 6 q30 DP=3846;AC=18;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 1634 . c a 6 q30 DP=3818;AC=18;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 1643 . c a 1 q30 DP=3741;AC=13;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 1645 . g t 2 q30 DP=3749;AC=14;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 1646 . g t 3 q30 DP=3805;AC=15;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 1660 . c a 5 q30 DP=3331;AC=15;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 1661 . c a 13 q30 DP=3271;AC=19;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 1670 . c a 1 q30 DP=2930;AC=9;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 1672 . c a 13 q30 DP=2559;AC=16;AF=0.0063 SIVmac239M5SpXplasmid_reference_1269-10407 1673 . c a 3 q30 DP=2524;AC=10;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 1676 . a c 12 q30 DP=2497;AC=15;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 1677 . a c 4 q30 DP=2490;AC=11;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 1684 . g t 1 q30 DP=2350;AC=7;AF=0.0030 SIVmac239M5SpXplasmid_reference_1269-10407 1685 . g t 17 q30 DP=2325;AC=16;AF=0.0069 SIVmac239M5SpXplasmid_reference_1269-10407 1686 . a c 1 q30 DP=2308;AC=7;AF=0.0030 SIVmac239M5SpXplasmid_reference_1269-10407 1695 . a c 1 q30 DP=2024;AC=7;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 1699 . t g 1 q30 DP=1607;AC=5;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 1705 . a c 1 q30 DP=1439;AC=5;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 1717 . t a 1 q30;ac5 DP=887;AC=3;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 1717 . t g 9 q30 DP=887;AC=6;AF=0.0068 SIVmac239M5SpXplasmid_reference_1269-10407 1720 . a c 1 q30;ac5 DP=934;AC=3;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 1721 . a c 1 q30;ac5 DP=953;AC=3;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 1722 . a c 3 q30;ac5 DP=953;AC=4;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 1722 . a t 1 q30;ac5 DP=953;AC=3;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 1724 . a c 1 q30;ac5 DP=976;AC=3;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 1725 . t a 1 q30;ac5 DP=993;AC=3;AF=0.0030 SIVmac239M5SpXplasmid_reference_1269-10407 1727 . t g 4 q30 DP=1009;AC=5;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 1733 . t g 5 q30 DP=1185;AC=6;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 1734 . a c 3 q30 DP=1189;AC=5;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 1736 . a g 1 q30;ac5 DP=1192;AC=4;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 1736 . a t 1 q30;ac5 DP=1192;AC=4;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 1739 . t g 4 q30 DP=1333;AC=6;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 1740 . t g 3 q30 DP=1337;AC=6;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 1741 . t a 8 q30 DP=1337;AC=8;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 1741 . t g 14 q30 DP=1337;AC=10;AF=0.0075 SIVmac239M5SpXplasmid_reference_1269-10407 1743 . a g 8 q30 DP=1347;AC=8;AF=0.0059 SIVmac239M5SpXplasmid_reference_1269-10407 1744 . g a 1 q30;ac5 DP=1384;AC=4;AF=0.0029 SIVmac239M5SpXplasmid_reference_1269-10407 1744 . g t 2 q30 DP=1384;AC=5;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 1745 . g a 2 q30 DP=1386;AC=5;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 1745 . g t 1 q30;ac5 DP=1386;AC=4;AF=0.0029 SIVmac239M5SpXplasmid_reference_1269-10407 1746 . c a 3 q30 DP=1415;AC=6;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 1747 . a c 1 q30;ac5 DP=1408;AC=4;AF=0.0028 SIVmac239M5SpXplasmid_reference_1269-10407 1751 . g t 1 q30 DP=1573;AC=5;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 1755 . t a 1 q30 DP=1668;AC=5;AF=0.0030 SIVmac239M5SpXplasmid_reference_1269-10407 1757 . a c 1 q30 DP=1687;AC=5;AF=0.0030 SIVmac239M5SpXplasmid_reference_1269-10407 1759 . g t 6 q30 DP=1709;AC=9;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 1760 . g t 14 q30 DP=1739;AC=12;AF=0.0069 SIVmac239M5SpXplasmid_reference_1269-10407 1761 . g a 3 q30 DP=1744;AC=7;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 1761 . g t 1 q30 DP=1744;AC=5;AF=0.0029 SIVmac239M5SpXplasmid_reference_1269-10407 1762 . a g 1 q30 DP=1744;AC=5;AF=0.0029 SIVmac239M5SpXplasmid_reference_1269-10407 1770 . g t 2 q30 DP=2332;AC=9;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 1774 . g t 1 q30 DP=2468;AC=8;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 1775 . g a 1 q30 DP=2496;AC=8;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 1775 . g t 30 PASS DP=2496;AC=21;AF=0.0084 SIVmac239M5SpXplasmid_reference_1269-10407 1776 . g t 9 q30 DP=2538;AC=14;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 1779 . c t 1 q30 DP=2556;AC=8;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 1780 . a g 2 q30 DP=2548;AC=9;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 1782 . c a 7 q30 DP=2585;AC=13;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 1784 . c a 3 q30 DP=2597;AC=11;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 1788 . t g 1 q30 DP=2739;AC=9;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 1795 . t g 3 q30 DP=2751;AC=11;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 1798 . g t 2 q30 DP=2760;AC=10;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 1805 . a c 2 q30 DP=2813;AC=11;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 1806 . t g 10 q30 DP=2831;AC=16;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 1807 . t g 5 q30 DP=2832;AC=13;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 1808 . t a 1 q30 DP=2855;AC=9;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 1809 . g t 1 q30 DP=2892;AC=9;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 1810 . c a 1 q30 DP=2899;AC=10;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 1818 . t g 4 q30 DP=3159;AC=14;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 1821 . g t 7 q30 DP=3282;AC=16;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 1822 . g t 8 q30 DP=3286;AC=17;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 1823 . g t 3 q30 DP=3290;AC=13;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 1825 . a c 1 q30 DP=3202;AC=10;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 1828 . t g 1 q30 DP=3326;AC=11;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 1831 . c a 9 q30 DP=3396;AC=18;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 1836 . t g 3 q30 DP=3425;AC=14;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 1837 . t g 2 q30 DP=3356;AC=12;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 1838 . t g 6 q30 DP=3334;AC=16;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 1839 . t a 2 q30 DP=3337;AC=12;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 1839 . t g 4 q30 DP=3337;AC=14;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 1840 . c a 4 q30 DP=3350;AC=14;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 1841 . c a 10 q30 DP=3350;AC=18;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 1841 . c t 2 q30 DP=3350;AC=12;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 1842 . c a 2 q30 DP=3345;AC=12;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 1855 . g t 8 q30 DP=4082;AC=20;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 1856 . a g 3 q30 DP=4016;AC=16;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 1858 . c a 7 q30 DP=4014;AC=19;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 1860 . t g 1 q30 DP=4064;AC=14;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 1862 . t g 1 q30 DP=4092;AC=13;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 1866 . a c 1 q30 DP=4054;AC=13;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 1868 . t g 4 q30 DP=3975;AC=17;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 1869 . c a 14 q30 DP=3955;AC=23;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 1871 . c a 10 q30 DP=4023;AC=21;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 1872 . c a 4 q30 DP=4026;AC=17;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 1873 . t g 4 q30 DP=4028;AC=17;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 1876 . a c 1 q30 DP=4043;AC=13;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 1878 . g t 2 q30 DP=4074;AC=15;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 1879 . c a 28 q30 DP=4076;AC=29;AF=0.0071 SIVmac239M5SpXplasmid_reference_1269-10407 1880 . c a 1 q30 DP=4047;AC=14;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 1881 . a t 1 q30 DP=4042;AC=14;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 1884 . a c 14 q30 DP=4219;AC=24;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 1888 . g t 2 q30 DP=4299;AC=16;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 1889 . a c 11 q30 DP=4297;AC=23;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 1890 . t a 1 q30 DP=4293;AC=14;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 1891 . g t 3 q30 DP=4238;AC=17;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 1892 . g t 3 q30 DP=4314;AC=17;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 1894 . c a 22 q30 DP=4348;AC=28;AF=0.0064 SIVmac239M5SpXplasmid_reference_1269-10407 1895 . c a 24 q30 DP=4350;AC=29;AF=0.0067 SIVmac239M5SpXplasmid_reference_1269-10407 1897 . a c 3 q30 DP=4397;AC=18;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 1900 . t g 38 PASS DP=4620;AC=35;AF=0.0076 SIVmac239M5SpXplasmid_reference_1269-10407 1901 . t g 1 q30 DP=4564;AC=15;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 1902 . g t 6 q30 DP=4567;AC=21;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 1904 . a c 1 q30 DP=4613;AC=16;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 1906 . c a 4 q30 DP=4682;AC=20;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 1909 . t g 2 q30 DP=4704;AC=17;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 1910 . g t 7 q30 DP=4910;AC=23;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 1911 . g t 1 q30 DP=4974;AC=17;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 1912 . c a 11 q30 DP=4980;AC=26;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 1913 . c a 6 q30 DP=4988;AC=23;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 1914 . a c 3 q30 DP=4972;AC=20;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 1915 . t a 2 q30 DP=4977;AC=18;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 1915 . t g 2 q30 DP=4977;AC=18;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 1917 . a c 1 q30 DP=5031;AC=17;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 1918 . t a 11 q30 DP=5034;AC=26;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 1919 . c a 11 q30 DP=4992;AC=26;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 1920 . a c 1 q30 DP=4977;AC=17;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 1921 . a c 1 q30 DP=5051;AC=18;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 1922 . a c 4 q30 DP=5063;AC=21;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 1925 . a c 2 q30 DP=5316;AC=20;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 1931 . t g 5 q30 DP=5576;AC=24;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 1934 . t g 2 q30 DP=5533;AC=21;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 1935 . t g 1 q30 DP=5520;AC=18;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 1936 . g t 1 q30 DP=5596;AC=19;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 1939 . t a 14 q30 DP=5775;AC=31;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 1939 . t g 34 PASS DP=5775;AC=40;AF=0.0069 SIVmac239M5SpXplasmid_reference_1269-10407 1940 . t g 19 q30 DP=5784;AC=34;AF=0.0059 SIVmac239M5SpXplasmid_reference_1269-10407 1942 . a c 1 q30 DP=5907;AC=20;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 1948 . a c 1 q30 DP=5758;AC=19;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 1949 . t a 7 q30 DP=5793;AC=27;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 1949 . t g 9 q30 DP=5793;AC=28;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 1950 . c a 6 q30 DP=5808;AC=26;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 1953 . t g 3 q30 DP=5693;AC=23;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 1954 . g t 1 q30 DP=5688;AC=19;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 1962 . g t 2 q30 DP=5693;AC=21;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 1964 . a c 3 q30 DP=5638;AC=22;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 1968 . g t 2 q30 DP=5661;AC=21;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 1972 . g t 6 q30 DP=5544;AC=25;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 1975 . c a 14 q30 DP=5724;AC=31;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 1980 . g t 1 q30 DP=5923;AC=20;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 1983 . g t 1 q30 DP=5875;AC=21;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 1988 . c a 6 q30 DP=5601;AC=25;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 1989 . t a 34 PASS DP=5585;AC=39;AF=0.0070 SIVmac239M5SpXplasmid_reference_1269-10407 1989 . t c 4 q30 DP=5585;AC=23;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 1989 . t g 29 q30 DP=5585;AC=37;AF=0.0066 SIVmac239M5SpXplasmid_reference_1269-10407 1990 . c a 33 PASS DP=5672;AC=39;AF=0.0069 SIVmac239M5SpXplasmid_reference_1269-10407 1991 . c a 54 PASS DP=5686;AC=46;AF=0.0081 SIVmac239M5SpXplasmid_reference_1269-10407 1991 . c t 4 q30 DP=5686;AC=24;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 1992 . c a 76 PASS DP=5697;AC=52;AF=0.0091 SIVmac239M5SpXplasmid_reference_1269-10407 1993 . c a 64 PASS DP=5709;AC=49;AF=0.0086 SIVmac239M5SpXplasmid_reference_1269-10407 1994 . c a 27 q30 DP=5723;AC=37;AF=0.0065 SIVmac239M5SpXplasmid_reference_1269-10407 1997 . c a 18 q30 DP=5957;AC=34;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 1998 . c a 20 q30 DP=5947;AC=35;AF=0.0059 SIVmac239M5SpXplasmid_reference_1269-10407 2002 . c a 4 q30 DP=7713;AC=32;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 2003 . c a 8 q30 DP=7802;AC=36;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 2012 . c a 30 PASS DP=8695;AC=53;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 2013 . c a 73 PASS DP=8622;AC=68;AF=0.0079 SIVmac239M5SpXplasmid_reference_1269-10407 2014 . c a 85 PASS DP=8655;AC=72;AF=0.0083 SIVmac239M5SpXplasmid_reference_1269-10407 2015 . c a 68 PASS DP=8706;AC=67;AF=0.0077 SIVmac239M5SpXplasmid_reference_1269-10407 2016 . c a 21 q30 DP=8773;AC=49;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 2020 . t a 1 q30 DP=8950;AC=30;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 2020 . t g 18 q30 DP=8950;AC=48;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 2021 . t g 5 q30 DP=8882;AC=37;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 2022 . t a 9 q30 DP=8881;AC=41;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 2022 . t g 5 q30 DP=8881;AC=38;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 2025 . t g 2 q30 DP=9065;AC=34;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 2037 . g a 1 q30 DP=9987;AC=35;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 2050 . t g 1 q30 DP=11310;AC=40;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 2051 . g t 13 q30 DP=11543;AC=56;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 2067 . t g 5 q30 DP=12185;AC=51;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 2068 . t g 3 q30 DP=12156;AC=47;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 2069 . t a 1 q30 DP=12182;AC=42;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 2069 . t g 24 q30 DP=12182;AC=66;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 2073 . g t 12 q30 DP=12167;AC=58;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 2084 . g t 6 q30 DP=13774;AC=58;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 2085 . g t 16 q30 DP=13732;AC=68;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 2088 . c a 7 q30 DP=13203;AC=57;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 2092 . c a 38 PASS DP=13934;AC=82;AF=0.0059 SIVmac239M5SpXplasmid_reference_1269-10407 2095 . g t 2 q30 DP=14032;AC=53;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 2099 . t a 1 q30 DP=13998;AC=50;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 2099 . t g 1 q30 DP=13998;AC=48;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 2108 . t a 9 q30 DP=13866;AC=62;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 2108 . t g 2 q30 DP=13866;AC=51;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 2109 . c a 8 q30 DP=13934;AC=61;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 2110 . c a 61 PASS DP=13949;AC=92;AF=0.0066 SIVmac239M5SpXplasmid_reference_1269-10407 2116 . g t 2 q30 DP=14182;AC=54;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 2123 . c a 3 q30 DP=15323;AC=59;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 2127 . c a 14 q30 DP=15385;AC=73;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 2128 . c a 71 PASS DP=14920;AC=101;AF=0.0068 SIVmac239M5SpXplasmid_reference_1269-10407 2129 . c a 1 q30 DP=15617;AC=57;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 2145 . a c 2 q30 DP=15263;AC=58;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 2164 . c a 1 q30 DP=17150;AC=62;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 2166 . g t 5 q30 DP=19235;AC=79;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 2189 . c a 1 q30 DP=17417;AC=60;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 2197 . c a 2 q30 DP=17357;AC=66;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 2206 . g t 1 q30 DP=16438;AC=59;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 2209 . t g 7 q30 DP=16600;AC=71;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 2213 . g t 2 q30 DP=16773;AC=64;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 2225 . c a 1 q30 DP=17163;AC=60;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 2226 . c a 4 q30 DP=16892;AC=67;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 2237 . c a 39 PASS DP=15548;AC=90;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 2239 . t g 10 q30 DP=15472;AC=70;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 2250 . t g 1 q30 DP=15332;AC=56;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 2255 . a g 2 q30 DP=14058;AC=52;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 2257 . c a 5 q30 DP=14030;AC=58;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 2258 . c a 11 q30 DP=13876;AC=64;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 2274 . t g 1 q30 DP=14062;AC=48;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 2279 . a c 1 q30 DP=13726;AC=47;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 2281 . g t 6 q30 DP=13431;AC=57;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 2284 . c a 2 q30 DP=12220;AC=46;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 2287 . c a 5 q30 DP=12271;AC=51;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 2288 . c a 16 q30 DP=12247;AC=61;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 2289 . t g 43 PASS DP=12046;AC=75;AF=0.0062 SIVmac239M5SpXplasmid_reference_1269-10407 2290 . c a 19 q30 DP=11788;AC=61;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 2292 . g t 3 q30 DP=11878;AC=46;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 2293 . g t 31 PASS DP=11945;AC=69;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 2294 . g t 8 q30 DP=11955;AC=53;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 2297 . g t 6 q30 DP=11608;AC=50;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 2299 . a c 4 q30 DP=11594;AC=47;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 2300 . a c 7 q30 DP=11578;AC=51;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 2301 . g t 14 q30 DP=11332;AC=56;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 2302 . g t 39 PASS DP=11145;AC=69;AF=0.0062 SIVmac239M5SpXplasmid_reference_1269-10407 2303 . g a 2 q30 DP=11162;AC=42;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 2303 . g t 18 q30 DP=11162;AC=58;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 2304 . g t 2 q30 DP=11172;AC=41;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 2305 . t a 1 q30 DP=11124;AC=39;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 2306 . c a 23 q30 DP=11140;AC=61;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 2308 . c a 11 q30 DP=11102;AC=52;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 2309 . c a 19 q30 DP=11090;AC=58;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 2312 . c a 1 q30 DP=11139;AC=39;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 2313 . c a 24 q30 DP=11107;AC=61;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 2315 . t g 2 q30 DP=11253;AC=41;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 2319 . c a 1 q30 DP=12255;AC=42;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 2320 . c a 30 PASS DP=12253;AC=70;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 2333 . g t 1 q30 DP=12874;AC=45;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 2335 . c a 1 q30 DP=12795;AC=44;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 2347 . c a 3 q30 DP=13158;AC=51;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 2348 . c a 82 PASS DP=12646;AC=93;AF=0.0074 SIVmac239M5SpXplasmid_reference_1269-10407 2349 . c a 18 q30 DP=12721;AC=65;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 2350 . t g 54 PASS DP=12668;AC=83;AF=0.0066 SIVmac239M5SpXplasmid_reference_1269-10407 2354 . g t 5 q30 DP=12641;AC=53;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 2355 . g t 5 q30 DP=12634;AC=52;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 2357 . a c 1 q30 DP=12501;AC=43;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 2358 . g t 7 q30 DP=12483;AC=54;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 2359 . g t 6 q30 DP=12483;AC=53;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 2364 . t g 8 q30 DP=12740;AC=56;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 2365 . c a 2 q30 DP=12752;AC=47;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 2366 . c a 10 q30 DP=12365;AC=57;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 2369 . a c 1 q30 DP=12450;AC=43;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 2373 . g t 40 PASS DP=12329;AC=75;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 2375 . c a 26 q30 DP=12742;AC=70;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 2376 . c a 3 q30 DP=12857;AC=50;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 2382 . c a 2 q30 DP=13382;AC=51;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 2383 . c a 36 PASS DP=13387;AC=78;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 2391 . g t 6 q30 DP=14945;AC=63;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 2413 . g t 2 q30 DP=15232;AC=58;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 2417 . g t 1 q30 DP=15653;AC=56;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 2418 . g t 4 q30 DP=15685;AC=63;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 2422 . g t 3 q30 DP=15960;AC=63;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 2424 . c a 16 q30 DP=16077;AC=78;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 2425 . c a 26 q30 DP=16273;AC=86;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 2427 . g t 26 q30 DP=16257;AC=86;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 2438 . g t 31 PASS DP=16894;AC=92;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 2439 . g t 100 PASS DP=16839;AC=126;AF=0.0075 SIVmac239M5SpXplasmid_reference_1269-10407 2444 . t g 3 q30 DP=17278;AC=66;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 2445 . t a 1 q30 DP=17298;AC=63;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 2445 . t g 7 q30 DP=17298;AC=74;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 2446 . t g 51 PASS DP=17282;AC=104;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 2452 . t g 2 q30 DP=17466;AC=66;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 2453 . c a 12 q30 DP=17593;AC=81;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 2457 . g t 37 PASS DP=17759;AC=99;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 2458 . g t 14 q30 DP=17813;AC=83;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 2462 . t a 24 q30 DP=17906;AC=92;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 2462 . t g 12 q30 DP=17906;AC=82;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 2463 . c a 58 PASS DP=18422;AC=113;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 2464 . t g 24 q30 DP=18449;AC=94;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 2466 . g t 9 q30 DP=18691;AC=82;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 2476 . g t 26 q30 DP=19007;AC=98;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 2477 . g t 22 q30 DP=19012;AC=95;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 2479 . t a 9 q30 DP=19092;AC=83;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 2480 . t g 27 q30 DP=18583;AC=97;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 2481 . t a 3 q30 DP=18697;AC=72;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 2481 . t g 27 q30 DP=18697;AC=97;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 2482 . t g 27 q30 DP=18848;AC=98;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 2484 . t g 4 q30 DP=18955;AC=76;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 2486 . c a 23 q30 DP=19016;AC=96;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 2487 . c a 100 PASS DP=18746;AC=134;AF=0.0071 SIVmac239M5SpXplasmid_reference_1269-10407 2488 . c a 100 PASS DP=18760;AC=199;AF=0.0106 SIVmac239M5SpXplasmid_reference_1269-10407 2488 . c t 5 q30 DP=18760;AC=77;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 2489 . c a 68 PASS DP=18758;AC=119;AF=0.0063 SIVmac239M5SpXplasmid_reference_1269-10407 2494 . g t 1 q30 DP=18758;AC=68;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 2496 . g t 4 q30 DP=18650;AC=75;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 2500 . t a 23 q30 DP=18566;AC=94;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 2500 . t g 90 PASS DP=18566;AC=127;AF=0.0068 SIVmac239M5SpXplasmid_reference_1269-10407 2501 . t a 100 PASS DP=18566;AC=131;AF=0.0071 SIVmac239M5SpXplasmid_reference_1269-10407 2501 . t g 100 PASS DP=18566;AC=141;AF=0.0076 SIVmac239M5SpXplasmid_reference_1269-10407 2502 . c a 61 PASS DP=18560;AC=115;AF=0.0062 SIVmac239M5SpXplasmid_reference_1269-10407 2503 . c a 10 q30 DP=18512;AC=82;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 2511 . t a 40 PASS DP=18404;AC=104;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 2511 . t g 32 PASS DP=18404;AC=99;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 2512 . c a 65 PASS DP=18420;AC=116;AF=0.0063 SIVmac239M5SpXplasmid_reference_1269-10407 2513 . c a 100 PASS DP=18512;AC=145;AF=0.0078 SIVmac239M5SpXplasmid_reference_1269-10407 2514 . c a 100 PASS DP=18502;AC=161;AF=0.0087 SIVmac239M5SpXplasmid_reference_1269-10407 2515 . c a 100 PASS DP=18492;AC=145;AF=0.0078 SIVmac239M5SpXplasmid_reference_1269-10407 2516 . c a 100 PASS DP=18432;AC=130;AF=0.0071 SIVmac239M5SpXplasmid_reference_1269-10407 2518 . t a 1 q30 DP=18520;AC=64;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 2518 . t g 39 PASS DP=18520;AC=104;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 2519 . t a 8 q30 DP=18408;AC=80;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 2519 . t g 100 PASS DP=18408;AC=147;AF=0.0080 SIVmac239M5SpXplasmid_reference_1269-10407 2520 . t a 3 q30 DP=18499;AC=71;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 2520 . t g 100 PASS DP=18499;AC=139;AF=0.0075 SIVmac239M5SpXplasmid_reference_1269-10407 2521 . c a 5 q30 DP=18495;AC=75;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 2524 . t a 1 q30 DP=18164;AC=66;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 2525 . g t 1 q30 DP=18112;AC=66;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 2527 . a c 4 q30 DP=17649;AC=70;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 2529 . g t 21 q30 DP=17468;AC=88;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 2530 . g t 71 PASS DP=17868;AC=116;AF=0.0065 SIVmac239M5SpXplasmid_reference_1269-10407 2531 . g a 15 q30 DP=18018;AC=85;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 2531 . g t 35 PASS DP=18018;AC=99;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 2539 . t g 40 PASS DP=16973;AC=97;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 2543 . g t 76 PASS DP=16076;AC=109;AF=0.0068 SIVmac239M5SpXplasmid_reference_1269-10407 2545 . c a 51 PASS DP=15985;AC=98;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 2546 . c a 100 PASS DP=15956;AC=200;AF=0.0125 SIVmac239M5SpXplasmid_reference_1269-10407 2549 . c a 5 q30 DP=15985;AC=65;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 2552 . a c 5 q30 DP=16050;AC=66;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 2563 . c a 1 q30 DP=15868;AC=55;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 2566 . a c 4 q30 DP=15893;AC=64;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 2567 . a c 2 q30 DP=16282;AC=61;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 2576 . t a 1 q30 DP=15310;AC=55;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 2578 . c a 47 PASS DP=15390;AC=93;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 2579 . c a 100 PASS DP=15387;AC=122;AF=0.0079 SIVmac239M5SpXplasmid_reference_1269-10407 2581 . c a 50 PASS DP=15306;AC=94;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 2584 . a c 1 q30 DP=15358;AC=56;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 2591 . c a 36 PASS DP=15006;AC=86;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 2592 . c a 43 PASS DP=14954;AC=89;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 2597 . c a 1 q30 DP=14812;AC=52;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 2617 . t a 1 q30 DP=13155;AC=45;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 2623 . g t 1 q30 DP=12928;AC=45;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 2634 . t g 2 q30 DP=13113;AC=48;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 2636 . g t 95 PASS DP=12203;AC=95;AF=0.0078 SIVmac239M5SpXplasmid_reference_1269-10407 2637 . g t 5 q30 DP=12130;AC=51;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 2643 . t a 3 q30 DP=11945;AC=47;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 2643 . t g 1 q30 DP=11945;AC=42;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 2644 . c a 53 PASS DP=11974;AC=79;AF=0.0066 SIVmac239M5SpXplasmid_reference_1269-10407 2648 . t a 1 q30 DP=12226;AC=42;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 2648 . t g 27 q30 DP=12226;AC=68;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 2649 . t a 5 q30 DP=12236;AC=51;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 2649 . t g 23 q30 DP=12236;AC=66;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 2652 . t a 33 PASS DP=11788;AC=69;AF=0.0059 SIVmac239M5SpXplasmid_reference_1269-10407 2652 . t g 1 q30 DP=11788;AC=41;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 2653 . c a 13 q30 DP=11783;AC=57;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 2654 . c a 13 q30 DP=11779;AC=57;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 2656 . g a 1 q30 DP=11793;AC=42;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 2656 . g t 5 q30 DP=11793;AC=49;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 2658 . t g 2 q30 DP=12080;AC=44;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 2667 . c a 5 q30 DP=11596;AC=48;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 2673 . t a 38 PASS DP=11871;AC=72;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 2673 . t g 60 PASS DP=11871;AC=81;AF=0.0068 SIVmac239M5SpXplasmid_reference_1269-10407 2675 . t a 6 q30 DP=11898;AC=51;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 2675 . t g 36 PASS DP=11898;AC=71;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 2676 . c a 3 q30 DP=12231;AC=47;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 2679 . t g 2 q30 DP=12140;AC=46;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 2687 . t a 11 q30 DP=10222;AC=49;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 2687 . t g 24 q30 DP=10222;AC=57;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 2688 . t g 9 q30 DP=10213;AC=47;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 2699 . t a 1 q30 DP=10123;AC=34;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 2702 . c a 4 q30 DP=10348;AC=42;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 2703 . t a 9 q30 DP=10332;AC=47;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 2703 . t g 2 q30 DP=10332;AC=38;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 2704 . c a 13 q30 DP=10351;AC=51;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 2705 . t a 1 q30 DP=10420;AC=36;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 2708 . c a 1 q30 DP=10590;AC=36;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 2710 . g t 1 q30 DP=10509;AC=37;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 2712 . g a 1 q30 DP=10411;AC=37;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 2712 . g t 24 q30 DP=10411;AC=58;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 2718 . t a 1 q30 DP=10630;AC=38;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 2718 . t g 2 q30 DP=10630;AC=40;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 2719 . c a 8 q30 DP=10654;AC=48;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 2723 . g t 31 PASS DP=10710;AC=63;AF=0.0059 SIVmac239M5SpXplasmid_reference_1269-10407 2726 . c a 6 q30 DP=10686;AC=46;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 2729 . a g 1 q30 DP=10962;AC=38;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 2733 . g t 8 q30 DP=10951;AC=49;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 2735 . c a 15 q30 DP=10981;AC=55;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 2741 . c a 11 q30 DP=11174;AC=53;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 2746 . t g 5 q30 DP=11491;AC=48;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 2748 . t a 3 q30 DP=11346;AC=44;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 2751 . g a 1 q30 DP=11223;AC=40;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 2751 . g t 3 q30 DP=11223;AC=44;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 2757 . t g 3 q30 DP=11184;AC=43;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 2762 . t g 6 q30 DP=11276;AC=48;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 2765 . t g 32 PASS DP=11064;AC=65;AF=0.0059 SIVmac239M5SpXplasmid_reference_1269-10407 2766 . t a 11 q30 DP=11068;AC=52;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 2766 . t g 77 PASS DP=11068;AC=83;AF=0.0075 SIVmac239M5SpXplasmid_reference_1269-10407 2768 . t a 8 q30 DP=10870;AC=49;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 2768 . t g 16 q30 DP=10870;AC=55;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 2772 . t a 6 q30 DP=11063;AC=47;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 2772 . t g 17 q30 DP=11063;AC=57;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 2773 . c a 15 q30 DP=11043;AC=55;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 2775 . g t 1 q30 DP=11157;AC=39;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 2785 . g t 1 q30 DP=10966;AC=39;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 2788 . t a 4 q30 DP=10826;AC=44;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 2791 . t g 2 q30 DP=10870;AC=41;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 2793 . t g 2 q30 DP=10943;AC=40;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 2796 . c a 12 q30 DP=10743;AC=52;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 2797 . c a 55 PASS DP=10639;AC=73;AF=0.0069 SIVmac239M5SpXplasmid_reference_1269-10407 2805 . c a 4 q30 DP=9963;AC=41;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 2809 . c a 20 q30 DP=9868;AC=53;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 2810 . c a 90 PASS DP=9843;AC=80;AF=0.0081 SIVmac239M5SpXplasmid_reference_1269-10407 2819 . c a 16 q30 DP=9506;AC=49;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 2820 . c a 100 PASS DP=9424;AC=82;AF=0.0087 SIVmac239M5SpXplasmid_reference_1269-10407 2835 . t a 3 q30 DP=9457;AC=37;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 2835 . t g 1 q30 DP=9457;AC=33;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 2836 . c a 6 q30 DP=9456;AC=41;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 2838 . g t 1 q30 DP=9590;AC=33;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 2844 . t a 6 q30 DP=9601;AC=42;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 2844 . t g 3 q30 DP=9601;AC=38;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 2845 . c a 5 q30 DP=9709;AC=41;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 2849 . g t 1 q30 DP=9468;AC=33;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 2851 . t a 4 q30 DP=9590;AC=39;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 2852 . c a 3 q30 DP=9608;AC=38;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 2861 . t a 4 q30 DP=9100;AC=37;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 2861 . t g 9 q30 DP=9100;AC=42;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 2863 . c a 9 q30 DP=9031;AC=42;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 2865 . c a 18 q30 DP=9027;AC=48;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 2866 . c a 14 q30 DP=9028;AC=46;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 2896 . t a 2 q30 DP=8239;AC=31;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 2896 . t g 2 q30 DP=8239;AC=31;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 2897 . t a 1 q30 DP=8229;AC=28;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 2919 . t g 2 q30 DP=8394;AC=32;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 2921 . c a 24 q30 DP=8677;AC=50;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 2922 . c a 33 PASS DP=8627;AC=54;AF=0.0063 SIVmac239M5SpXplasmid_reference_1269-10407 2926 . g t 1 q30 DP=8161;AC=27;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 2938 . t g 1 q30 DP=7464;AC=26;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 2942 . c a 14 q30 DP=7551;AC=39;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 2944 . c a 11 q30 DP=7257;AC=36;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 2960 . t g 15 q30 DP=6868;AC=37;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 2963 . g t 2 q30 DP=6978;AC=26;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 2967 . g t 12 q30 DP=6934;AC=35;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 2972 . c a 2 q30 DP=7088;AC=26;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 2975 . t g 26 q30 DP=7264;AC=44;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 2978 . t g 8 q30 DP=7005;AC=33;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 2981 . t g 9 q30 DP=7171;AC=34;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 2982 . c a 1 q30 DP=7239;AC=24;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 2984 . g t 5 q30 DP=7136;AC=30;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 2985 . g t 6 q30 DP=7123;AC=31;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 2986 . g t 40 PASS DP=7099;AC=49;AF=0.0069 SIVmac239M5SpXplasmid_reference_1269-10407 2987 . g t 6 q30 DP=7092;AC=31;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 2989 . c a 3 q30 DP=6966;AC=27;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 2993 . t g 1 q30 DP=6757;AC=24;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 2994 . c a 15 q30 DP=6763;AC=36;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 2995 . c a 34 PASS DP=6764;AC=45;AF=0.0067 SIVmac239M5SpXplasmid_reference_1269-10407 2996 . c a 60 PASS DP=6784;AC=54;AF=0.0080 SIVmac239M5SpXplasmid_reference_1269-10407 3001 . t g 10 q30 DP=6748;AC=33;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 3002 . t g 9 q30 DP=6716;AC=32;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 3003 . c a 15 q30 DP=6731;AC=36;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 3004 . c a 43 PASS DP=6727;AC=48;AF=0.0071 SIVmac239M5SpXplasmid_reference_1269-10407 3008 . t g 2 q30 DP=6815;AC=25;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 3010 . c a 3 q30 DP=6809;AC=27;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 3011 . c a 8 q30 DP=6837;AC=32;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 3014 . t g 6 q30 DP=7019;AC=31;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 3018 . g t 2 q30 DP=7097;AC=26;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 3020 . a c 1 q30 DP=7093;AC=24;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 3029 . g t 12 q30 DP=7390;AC=37;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 3030 . g t 2 q30 DP=7310;AC=28;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 3031 . g t 1 q30 DP=7364;AC=26;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 3034 . c a 2 q30 DP=7246;AC=27;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 3038 . g t 18 q30 DP=7389;AC=41;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 3041 . g t 39 PASS DP=7368;AC=50;AF=0.0068 SIVmac239M5SpXplasmid_reference_1269-10407 3049 . t g 1 q30 DP=7327;AC=24;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 3051 . t a 2 q30 DP=7314;AC=28;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 3051 . t g 14 q30 DP=7314;AC=38;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 3053 . g t 42 PASS DP=7314;AC=51;AF=0.0070 SIVmac239M5SpXplasmid_reference_1269-10407 3057 . g t 4 q30 DP=7219;AC=30;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 3062 . c a 3 q30 DP=7512;AC=30;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 3065 . g t 2 q30 DP=7622;AC=29;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 3070 . c a 39 PASS DP=7596;AC=51;AF=0.0067 SIVmac239M5SpXplasmid_reference_1269-10407 3071 . c a 11 q30 DP=7550;AC=37;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 3072 . g t 2 q30 DP=7549;AC=29;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 3073 . g t 3 q30 DP=7640;AC=30;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 3074 . a c 1 q30 DP=7611;AC=26;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 3074 . a t 1 q30 DP=7611;AC=26;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 3075 . a c 2 q30 DP=7618;AC=28;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 3077 . g t 36 PASS DP=7606;AC=50;AF=0.0066 SIVmac239M5SpXplasmid_reference_1269-10407 3078 . g t 5 q30 DP=7701;AC=33;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 3079 . g t 3 q30 DP=7764;AC=31;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 3082 . t g 3 q30 DP=7738;AC=30;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 3083 . t g 3 q30 DP=7747;AC=31;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 3087 . c a 7 q30 DP=7935;AC=36;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 3089 . c a 6 q30 DP=7969;AC=35;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 3094 . c a 4 q30 DP=8037;AC=33;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 3095 . c a 55 PASS DP=7979;AC=59;AF=0.0074 SIVmac239M5SpXplasmid_reference_1269-10407 3097 . c a 6 q30 DP=8111;AC=35;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 3098 . c a 69 PASS DP=8090;AC=64;AF=0.0079 SIVmac239M5SpXplasmid_reference_1269-10407 3100 . c a 8 q30 DP=8191;AC=38;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 3109 . t a 1 q30 DP=8314;AC=28;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 3109 . t g 1 q30 DP=8314;AC=30;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 3115 . t g 7 q30 DP=8303;AC=37;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 3116 . t a 1 q30 DP=8293;AC=29;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 3116 . t g 2 q30 DP=8293;AC=31;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 3117 . c a 12 q30 DP=8261;AC=41;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 3120 . t g 2 q30 DP=8401;AC=31;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 3121 . c a 13 q30 DP=8325;AC=42;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 3122 . t g 3 q30 DP=8319;AC=33;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 3126 . g t 1 q30 DP=8561;AC=30;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 3129 . g t 3 q30 DP=8474;AC=33;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 3130 . g t 7 q30 DP=8511;AC=38;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 3132 . c a 83 PASS DP=9636;AC=77;AF=0.0080 SIVmac239M5SpXplasmid_reference_1269-10407 3133 . c a 100 PASS DP=9582;AC=98;AF=0.0102 SIVmac239M5SpXplasmid_reference_1269-10407 3134 . c a 70 PASS DP=9881;AC=74;AF=0.0075 SIVmac239M5SpXplasmid_reference_1269-10407 3137 . t g 6 q30 DP=10040;AC=43;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 3141 . g t 4 q30 DP=9313;AC=38;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 3142 . g a 7 q30 DP=9269;AC=41;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 3142 . g t 17 q30 DP=9269;AC=49;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 3143 . g t 5 q30 DP=9218;AC=39;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 3152 . c a 29 q30 DP=9446;AC=56;AF=0.0059 SIVmac239M5SpXplasmid_reference_1269-10407 3153 . c a 7 q30 DP=10355;AC=46;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 3154 . t g 5 q30 DP=10371;AC=43;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 3156 . t a 7 q30 DP=10714;AC=47;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 3156 . t g 18 q30 DP=10714;AC=56;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 3157 . t g 1 q30 DP=10717;AC=38;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 3166 . g t 16 q30 DP=11245;AC=57;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 3167 . g t 2 q30 DP=11193;AC=41;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 3169 . t a 5 q30 DP=11255;AC=47;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 3170 . c a 13 q30 DP=11101;AC=54;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 3184 . t a 2 q30 DP=12290;AC=47;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 3184 . t g 18 q30 DP=12290;AC=63;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 3185 . c a 4 q30 DP=12311;AC=49;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 3193 . g t 3 q30 DP=12489;AC=48;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 3194 . g t 6 q30 DP=12536;AC=53;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 3205 . t g 1 q30 DP=13745;AC=48;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 3209 . t g 2 q30 DP=14416;AC=54;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 3218 . g t 3 q30 DP=13174;AC=51;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 3219 . g t 35 PASS DP=13215;AC=77;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 3220 . g a 4 q30 DP=13319;AC=54;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 3220 . g t 4 q30 DP=13319;AC=54;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 3273 . g t 1 q30 DP=11542;AC=40;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 3283 . c a 1 q30 DP=10823;AC=39;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 3285 . c a 9 q30 DP=10781;AC=49;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 3304 . g t 83 PASS DP=8623;AC=71;AF=0.0082 SIVmac239M5SpXplasmid_reference_1269-10407 3305 . g t 3 q30 DP=8620;AC=34;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 3307 . c a 1 q30 DP=8434;AC=29;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 3308 . c a 78 PASS DP=8175;AC=67;AF=0.0082 SIVmac239M5SpXplasmid_reference_1269-10407 3341 . t a 1 q30 DP=3245;AC=11;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 3358 . g a 1 q30 DP=2242;AC=7;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 3363 . c a 2 q30 DP=2159;AC=8;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 3364 . c a 23 q30 DP=2155;AC=17;AF=0.0079 SIVmac239M5SpXplasmid_reference_1269-10407 3365 . c a 30 PASS DP=2179;AC=19;AF=0.0087 SIVmac239M5SpXplasmid_reference_1269-10407 3368 . c a 1 q30 DP=2204;AC=7;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 3373 . t a 2 q30 DP=2051;AC=8;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 3374 . c a 1 q30 DP=2003;AC=6;AF=0.0030 SIVmac239M5SpXplasmid_reference_1269-10407 3378 . g a 1 q30 DP=1981;AC=6;AF=0.0030 SIVmac239M5SpXplasmid_reference_1269-10407 3379 . a g 1 q30 DP=1885;AC=6;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 3380 . g t 3 q30 DP=1884;AC=8;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 3383 . g t 2 q30 DP=1833;AC=7;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 3384 . g t 5 q30 DP=1836;AC=9;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 3385 . c a 7 q30 DP=1830;AC=10;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 3389 . t a 1 q30 DP=1729;AC=6;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 3390 . t g 3 q30 DP=1725;AC=7;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 3393 . t g 2 q30 DP=1626;AC=6;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 3398 . t g 7 q30 DP=1613;AC=9;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 3401 . t g 2 q30 DP=1652;AC=6;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 3413 . t a 7 q30 DP=1680;AC=9;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 3413 . t g 7 q30 DP=1680;AC=9;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 3414 . t g 2 q30 DP=1682;AC=6;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 3421 . t g 17 q30 DP=1746;AC=13;AF=0.0074 SIVmac239M5SpXplasmid_reference_1269-10407 3422 . c a 20 q30 DP=1749;AC=14;AF=0.0080 SIVmac239M5SpXplasmid_reference_1269-10407 3428 . t g 7 q30 DP=2081;AC=11;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 3429 . t g 14 q30 DP=2092;AC=14;AF=0.0067 SIVmac239M5SpXplasmid_reference_1269-10407 3430 . t a 2 q30 DP=2101;AC=8;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 3430 . t g 5 q30 DP=2101;AC=10;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 3440 . g t 14 q30 DP=2532;AC=16;AF=0.0063 SIVmac239M5SpXplasmid_reference_1269-10407 3441 . g a 5 q30 DP=2624;AC=12;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 3441 . g t 1 q30 DP=2624;AC=9;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 3446 . c a 1 q30 DP=2816;AC=9;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 3451 . c a 11 q30 DP=3015;AC=17;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 3453 . c a 4 q30 DP=3097;AC=13;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 3457 . g t 9 q30 DP=3632;AC=19;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 3463 . g t 2 q30 DP=4006;AC=15;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 3466 . g a 2 q30 DP=3902;AC=14;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 3467 . g t 2 q30 DP=3870;AC=15;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 3472 . c a 3 q30 DP=3994;AC=16;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 3479 . t g 7 q30 DP=4238;AC=20;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 3481 . g t 1 q30 DP=4233;AC=14;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 3484 . c a 13 q30 DP=4274;AC=24;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 3486 . c a 3 q30 DP=4340;AC=17;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 3487 . c a 6 q30 DP=4344;AC=20;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 3496 . c a 1 q30 DP=4488;AC=16;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 3499 . g t 23 q30 DP=4464;AC=29;AF=0.0065 SIVmac239M5SpXplasmid_reference_1269-10407 3500 . g t 7 q30 DP=4599;AC=22;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 3528 . g t 4 q30 DP=4494;AC=19;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 3532 . g t 3 q30 DP=4463;AC=18;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 3535 . c a 2 q30 DP=4451;AC=16;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 3536 . c a 3 q30 DP=4388;AC=17;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 3580 . t g 1 q30 DP=2994;AC=10;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 3581 . t a 1 q30 DP=2990;AC=10;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 3583 . g t 2 q30 DP=3080;AC=11;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 3586 . t a 2 q30 DP=3081;AC=11;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 3586 . t g 2 q30 DP=3081;AC=11;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 3587 . t g 2 q30 DP=3082;AC=12;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 3592 . t g 6 q30 DP=3175;AC=15;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 3593 . t g 16 q30 DP=3188;AC=20;AF=0.0063 SIVmac239M5SpXplasmid_reference_1269-10407 3596 . g t 1 q30 DP=3280;AC=11;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 3599 . t g 3 q30 DP=3273;AC=13;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 3601 . c a 4 q30 DP=3942;AC=17;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 3602 . c a 5 q30 DP=3999;AC=18;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 3608 . t g 13 q30 DP=4334;AC=24;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 3612 . g a 1 q30 DP=4272;AC=14;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 3612 . g t 67 PASS DP=4272;AC=41;AF=0.0096 SIVmac239M5SpXplasmid_reference_1269-10407 3614 . c a 2 q30 DP=4271;AC=16;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 3615 . c a 31 PASS DP=4298;AC=31;AF=0.0072 SIVmac239M5SpXplasmid_reference_1269-10407 3630 . c a 1 q30 DP=5499;AC=18;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 3632 . c a 12 q30 DP=5576;AC=29;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 3633 . c a 2 q30 DP=5570;AC=20;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 3643 . t g 6 q30 DP=5752;AC=26;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 3645 . t g 1 q30 DP=5682;AC=20;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 3648 . t g 3 q30 DP=5764;AC=23;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 3649 . c a 1 q30 DP=5890;AC=21;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 3655 . g t 1 q30 DP=6188;AC=22;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 3656 . g t 4 q30 DP=6188;AC=26;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 3657 . a g 8 q30 DP=6143;AC=29;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 3662 . c a 1 q30 DP=6873;AC=24;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 3663 . t g 5 q30 DP=6884;AC=29;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 3665 . t g 5 q30 DP=7322;AC=31;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 3670 . g t 100 PASS DP=7093;AC=79;AF=0.0111 SIVmac239M5SpXplasmid_reference_1269-10407 3671 . g a 3 q30 DP=7084;AC=28;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 3671 . g t 28 q30 DP=7084;AC=44;AF=0.0062 SIVmac239M5SpXplasmid_reference_1269-10407 3672 . g t 1 q30 DP=7088;AC=24;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 3677 . c a 2 q30 DP=7041;AC=27;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 3681 . t g 30 PASS DP=7300;AC=46;AF=0.0063 SIVmac239M5SpXplasmid_reference_1269-10407 3682 . t g 32 PASS DP=7317;AC=47;AF=0.0064 SIVmac239M5SpXplasmid_reference_1269-10407 3683 . c a 4 q30 DP=7334;AC=30;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 3685 . g t 1 q30 DP=7399;AC=25;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 3687 . t a 5 q30 DP=7680;AC=33;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 3687 . t g 2 q30 DP=7680;AC=29;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 3688 . c a 2 q30 DP=7708;AC=29;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 3689 . t g 1 q30 DP=7687;AC=27;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 3691 . g t 13 q30 DP=7705;AC=39;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 3692 . g t 69 PASS DP=7742;AC=62;AF=0.0080 SIVmac239M5SpXplasmid_reference_1269-10407 3693 . g t 12 q30 DP=7772;AC=39;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 3695 . c a 10 q30 DP=7729;AC=37;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 3696 . t g 1 q30 DP=7668;AC=27;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 3698 . g t 3 q30 DP=7831;AC=31;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 3699 . g t 1 q30 DP=7900;AC=28;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 3704 . t g 1 q30 DP=7980;AC=28;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 3705 . g t 24 q30 DP=8301;AC=48;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 3713 . c a 29 q30 DP=9067;AC=54;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 3714 . c a 46 PASS DP=8981;AC=61;AF=0.0068 SIVmac239M5SpXplasmid_reference_1269-10407 3715 . c a 61 PASS DP=9313;AC=68;AF=0.0073 SIVmac239M5SpXplasmid_reference_1269-10407 3718 . c a 1 q30 DP=9464;AC=34;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 3723 . g t 11 q30 DP=9403;AC=45;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 3724 . g t 38 PASS DP=9250;AC=59;AF=0.0064 SIVmac239M5SpXplasmid_reference_1269-10407 3725 . g t 4 q30 DP=9321;AC=38;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 3731 . t g 1 q30 DP=9514;AC=33;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 3734 . t g 6 q30 DP=9498;AC=41;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 3748 . c a 1 q30 DP=10847;AC=38;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 3760 . g t 14 q30 DP=10205;AC=51;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 3763 . t g 3 q30 DP=10128;AC=40;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 3765 . c a 1 q30 DP=10283;AC=35;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 3777 . g t 3 q30 DP=10086;AC=39;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 3782 . t a 2 q30 DP=10058;AC=37;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 3783 . t g 3 q30 DP=10045;AC=40;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 3784 . c a 4 q30 DP=10071;AC=41;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 3785 . c a 46 PASS DP=9972;AC=66;AF=0.0066 SIVmac239M5SpXplasmid_reference_1269-10407 3796 . g t 3 q30 DP=9836;AC=39;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 3800 . g t 1 q30 DP=9586;AC=33;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 3804 . g t 3 q30 DP=9415;AC=37;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 3809 . c a 8 q30 DP=9202;AC=42;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 3814 . t g 3 q30 DP=9112;AC=35;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 3817 . c a 4 q30 DP=8669;AC=36;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 3826 . t g 14 q30 DP=8141;AC=42;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 3828 . g t 12 q30 DP=8076;AC=40;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 3834 . c a 2 q30 DP=8045;AC=30;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 3839 . g t 50 PASS DP=7938;AC=57;AF=0.0072 SIVmac239M5SpXplasmid_reference_1269-10407 3841 . c a 18 q30 DP=8140;AC=44;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 3842 . c a 24 q30 DP=8222;AC=48;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 3843 . t g 1 q30 DP=8171;AC=27;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 3848 . c a 1 q30 DP=8368;AC=29;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 3850 . c a 5 q30 DP=7897;AC=34;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 3852 . t a 9 q30 DP=7990;AC=38;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 3852 . t c 17 q30 DP=7990;AC=43;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 3852 . t g 7 q30 DP=7990;AC=36;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 3853 . c a 33 PASS DP=7849;AC=50;AF=0.0064 SIVmac239M5SpXplasmid_reference_1269-10407 3856 . c a 16 q30 DP=7695;AC=41;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 3858 . c a 9 q30 DP=7674;AC=36;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 3864 . t g 12 q30 DP=6673;AC=34;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 3867 . t g 2 q30 DP=6515;AC=24;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 3868 . g t 10 q30 DP=6492;AC=32;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 3870 . t g 4 q30 DP=5847;AC=24;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 3871 . g t 10 q30 DP=5823;AC=29;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 3872 . c a 12 q30 DP=5804;AC=30;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 3877 . t g 9 q30 DP=5670;AC=28;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 3878 . t g 5 q30 DP=5541;AC=24;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 3882 . t g 11 q30 DP=5448;AC=28;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 3883 . t g 11 q30 DP=5443;AC=28;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 3886 . c a 2 q30 DP=5395;AC=20;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 3889 . g t 2 q30 DP=5402;AC=20;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 3890 . a c 1 q30 DP=5453;AC=18;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 3893 . t g 30 PASS DP=5516;AC=37;AF=0.0067 SIVmac239M5SpXplasmid_reference_1269-10407 3898 . a c 1 q30 DP=5545;AC=18;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 3900 . g t 38 PASS DP=5335;AC=39;AF=0.0073 SIVmac239M5SpXplasmid_reference_1269-10407 3902 . t a 1 q30 DP=5284;AC=18;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 3902 . t g 5 q30 DP=5284;AC=23;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 3905 . c a 15 q30 DP=5202;AC=29;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 3907 . t g 3 q30 DP=5152;AC=20;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 3908 . g t 6 q30 DP=5103;AC=23;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 3910 . t c 1 q30 DP=4925;AC=16;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 3911 . g t 45 PASS DP=4953;AC=39;AF=0.0079 SIVmac239M5SpXplasmid_reference_1269-10407 3912 . g t 1 q30 DP=4987;AC=16;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 3914 . c a 41 PASS DP=4983;AC=38;AF=0.0076 SIVmac239M5SpXplasmid_reference_1269-10407 3916 . g t 16 q30 DP=5019;AC=29;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 3917 . g t 8 q30 DP=5141;AC=25;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 3920 . t g 7 q30 DP=5102;AC=24;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 3922 . g t 1 q30 DP=5073;AC=18;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 3925 . c a 10 q30 DP=4940;AC=25;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 3927 . c a 14 q30 DP=4845;AC=27;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 3929 . c a 30 PASS DP=5108;AC=35;AF=0.0069 SIVmac239M5SpXplasmid_reference_1269-10407 3930 . c a 18 q30 DP=5114;AC=30;AF=0.0059 SIVmac239M5SpXplasmid_reference_1269-10407 3931 . t g 14 q30 DP=5067;AC=28;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 3932 . t g 2 q30 DP=5194;AC=20;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 3934 . g a 1 q30 DP=5251;AC=18;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 3934 . g t 56 PASS DP=5251;AC=44;AF=0.0084 SIVmac239M5SpXplasmid_reference_1269-10407 3935 . g a 3 q30 DP=5295;AC=21;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 3935 . g t 45 PASS DP=5295;AC=41;AF=0.0077 SIVmac239M5SpXplasmid_reference_1269-10407 3936 . g a 1 q30 DP=5316;AC=18;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 3936 . g t 22 q30 DP=5316;AC=33;AF=0.0062 SIVmac239M5SpXplasmid_reference_1269-10407 3940 . c a 10 q30 DP=5829;AC=29;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 3941 . c a 3 q30 DP=5789;AC=23;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 3943 . t g 2 q30 DP=6017;AC=23;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 3945 . c a 1 q30 DP=6155;AC=21;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 3948 . t a 42 PASS DP=6016;AC=44;AF=0.0073 SIVmac239M5SpXplasmid_reference_1269-10407 3948 . t g 65 PASS DP=6016;AC=51;AF=0.0085 SIVmac239M5SpXplasmid_reference_1269-10407 3949 . c a 44 PASS DP=6103;AC=45;AF=0.0074 SIVmac239M5SpXplasmid_reference_1269-10407 3950 . c a 11 q30 DP=6123;AC=31;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 3952 . c a 17 q30 DP=6065;AC=34;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 3954 . g t 2 q30 DP=6300;AC=23;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 3955 . a c 1 q30 DP=6293;AC=22;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 3957 . t a 2 q30 DP=6655;AC=24;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 3957 . t g 21 q30 DP=6655;AC=39;AF=0.0059 SIVmac239M5SpXplasmid_reference_1269-10407 3958 . c a 7 q30 DP=6632;AC=30;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 3960 . g t 3 q30 DP=6730;AC=27;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 3961 . g t 10 q30 DP=6763;AC=33;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 3962 . g t 1 q30 DP=6894;AC=23;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 3965 . t g 4 q30 DP=6922;AC=29;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 3969 . g t 39 PASS DP=6992;AC=48;AF=0.0069 SIVmac239M5SpXplasmid_reference_1269-10407 3974 . c a 9 q30 DP=7075;AC=34;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 3981 . t a 1 q30 DP=7308;AC=25;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 3981 . t g 2 q30 DP=7308;AC=28;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 3984 . c a 30 PASS DP=7302;AC=46;AF=0.0063 SIVmac239M5SpXplasmid_reference_1269-10407 3985 . c a 21 q30 DP=7290;AC=42;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 3987 . c a 70 PASS DP=7343;AC=60;AF=0.0082 SIVmac239M5SpXplasmid_reference_1269-10407 3988 . c a 40 PASS DP=7328;AC=50;AF=0.0068 SIVmac239M5SpXplasmid_reference_1269-10407 3989 . t a 2 q30 DP=7289;AC=28;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 3996 . t g 3 q30 DP=7377;AC=29;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 3997 . c a 4 q30 DP=7458;AC=31;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 4005 . t a 6 q30 DP=7869;AC=34;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 4005 . t g 1 q30 DP=7869;AC=26;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 4007 . g t 1 q30 DP=8035;AC=27;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 4010 . t a 22 q30 DP=8099;AC=46;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 4010 . t g 22 q30 DP=8099;AC=46;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 4011 . c a 1 q30 DP=8053;AC=29;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 4013 . g t 1 q30 DP=7969;AC=27;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 4014 . g t 3 q30 DP=7980;AC=32;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 4026 . t a 1 q30 DP=8109;AC=27;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 4026 . t g 2 q30 DP=8109;AC=31;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 4027 . t a 9 q30 DP=8099;AC=38;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 4027 . t g 12 q30 DP=8099;AC=40;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 4028 . c a 8 q30 DP=8122;AC=37;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 4037 . c a 8 q30 DP=8555;AC=39;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 4038 . c a 9 q30 DP=8550;AC=40;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 4040 . t g 5 q30 DP=8356;AC=35;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 4045 . t g 1 q30 DP=8940;AC=32;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 4046 . t g 3 q30 DP=8589;AC=34;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 4050 . g t 2 q30 DP=8567;AC=31;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 4056 . t a 1 q30 DP=7761;AC=28;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 4057 . c a 1 q30 DP=7776;AC=28;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 4062 . c a 1 q30 DP=7576;AC=26;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 4068 . t a 3 q30 DP=7516;AC=30;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 4068 . t g 1 q30 DP=7516;AC=25;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 4079 . g t 23 q30 DP=7549;AC=44;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 4080 . g t 15 q30 DP=7584;AC=40;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 4090 . g t 3 q30 DP=7715;AC=31;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 4091 . g a 2 q30 DP=7623;AC=29;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 4091 . g t 41 PASS DP=7623;AC=52;AF=0.0068 SIVmac239M5SpXplasmid_reference_1269-10407 4092 . g a 9 q30 DP=7671;AC=36;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 4092 . g t 5 q30 DP=7671;AC=33;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 4100 . c a 1 q30 DP=7011;AC=23;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 4102 . c a 21 q30 DP=6651;AC=39;AF=0.0059 SIVmac239M5SpXplasmid_reference_1269-10407 4103 . c a 7 q30 DP=6623;AC=30;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 4114 . t a 1 q30 DP=6378;AC=21;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 4114 . t g 1 q30 DP=6378;AC=21;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 4124 . t a 1 q30 DP=6006;AC=20;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 4127 . t a 14 q30 DP=6164;AC=33;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 4128 . c a 7 q30 DP=6168;AC=28;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 4138 . c a 1 q30 DP=5697;AC=20;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 4141 . g t 1 q30 DP=4372;AC=14;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 4142 . a g 8 q30 DP=4241;AC=21;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 4143 . g t 1 q30 DP=4265;AC=15;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 4145 . t g 10 q30 DP=3815;AC=20;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 4147 . c a 4 q30 DP=3823;AC=16;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 4150 . t a 10 q30 DP=3534;AC=19;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 4150 . t g 8 q30 DP=3534;AC=18;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 4151 . t a 1 q30 DP=3463;AC=12;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 4151 . t g 7 q30 DP=3463;AC=17;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 4152 . t a 11 q30 DP=3440;AC=19;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 4152 . t g 6 q30 DP=3440;AC=16;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 4153 . c a 8 q30 DP=3365;AC=17;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 4159 . t a 49 PASS DP=3180;AC=30;AF=0.0094 SIVmac239M5SpXplasmid_reference_1269-10407 4159 . t g 19 q30 DP=3180;AC=21;AF=0.0066 SIVmac239M5SpXplasmid_reference_1269-10407 4160 . c a 2 q30 DP=3186;AC=12;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 4167 . c a 1 q30 DP=3196;AC=10;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 4168 . t a 6 q30 DP=3171;AC=15;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 4168 . t g 38 PASS DP=3171;AC=27;AF=0.0085 SIVmac239M5SpXplasmid_reference_1269-10407 4169 . c a 2 q30 DP=3179;AC=12;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 4174 . t a 7 q30 DP=3208;AC=16;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 4174 . t g 37 PASS DP=3208;AC=27;AF=0.0084 SIVmac239M5SpXplasmid_reference_1269-10407 4175 . t a 4 q30 DP=3205;AC=14;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 4175 . t g 49 PASS DP=3205;AC=30;AF=0.0094 SIVmac239M5SpXplasmid_reference_1269-10407 4176 . t g 11 q30 DP=3197;AC=18;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 4179 . a g 2 q30 DP=3219;AC=12;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 4180 . a g 1 q30 DP=3226;AC=10;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 4182 . t a 1 q30 DP=3238;AC=11;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 4182 . t g 100 PASS DP=3238;AC=49;AF=0.0151 SIVmac239M5SpXplasmid_reference_1269-10407 4183 . t a 1 q30 DP=3241;AC=10;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 4183 . t g 89 PASS DP=3241;AC=39;AF=0.0120 SIVmac239M5SpXplasmid_reference_1269-10407 4184 . t a 1 q30 DP=3242;AC=10;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 4184 . t g 44 PASS DP=3242;AC=29;AF=0.0089 SIVmac239M5SpXplasmid_reference_1269-10407 4185 . t a 3 q30 DP=3244;AC=13;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 4185 . t g 9 q30 DP=3244;AC=17;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 4186 . c a 1 q30 DP=3246;AC=10;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 4187 . g a 1 q30 DP=3239;AC=11;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 4189 . g t 1 q30 DP=3474;AC=11;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 4190 . t g 46 PASS DP=3471;AC=31;AF=0.0089 SIVmac239M5SpXplasmid_reference_1269-10407 4191 . c a 1 q30 DP=3692;AC=13;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 4192 . t g 57 PASS DP=3709;AC=35;AF=0.0094 SIVmac239M5SpXplasmid_reference_1269-10407 4194 . t a 15 q30 DP=4136;AC=24;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 4194 . t g 62 PASS DP=4136;AC=39;AF=0.0094 SIVmac239M5SpXplasmid_reference_1269-10407 4195 . t g 2 q30 DP=4160;AC=16;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 4197 . c a 1 q30 DP=4211;AC=15;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 4200 . a g 23 q30 DP=4035;AC=27;AF=0.0067 SIVmac239M5SpXplasmid_reference_1269-10407 4201 . g t 1 q30 DP=4068;AC=14;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 4202 . a g 1 q30 DP=3849;AC=13;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 4204 . g a 5 q30 DP=3858;AC=17;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 4204 . g t 5 q30 DP=3858;AC=17;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 4205 . g t 1 q30 DP=3859;AC=13;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 4206 . c a 13 q30 DP=3863;AC=22;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 4208 . g t 2 q30 DP=3922;AC=15;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 4209 . a g 31 PASS DP=3884;AC=29;AF=0.0075 SIVmac239M5SpXplasmid_reference_1269-10407 4210 . g t 2 q30 DP=3947;AC=15;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 4211 . a c 2 q30 DP=3943;AC=15;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 4212 . t a 30 PASS DP=3929;AC=29;AF=0.0074 SIVmac239M5SpXplasmid_reference_1269-10407 4212 . t g 76 PASS DP=3929;AC=41;AF=0.0104 SIVmac239M5SpXplasmid_reference_1269-10407 4213 . c a 44 PASS DP=3912;AC=33;AF=0.0084 SIVmac239M5SpXplasmid_reference_1269-10407 4216 . c a 26 q30 DP=4037;AC=28;AF=0.0069 SIVmac239M5SpXplasmid_reference_1269-10407 4217 . t a 8 q30 DP=3967;AC=20;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 4217 . t g 24 q30 DP=3967;AC=27;AF=0.0068 SIVmac239M5SpXplasmid_reference_1269-10407 4219 . t g 24 q30 DP=3998;AC=27;AF=0.0068 SIVmac239M5SpXplasmid_reference_1269-10407 4220 . g a 1 q30 DP=4013;AC=13;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 4220 . g t 57 PASS DP=4013;AC=37;AF=0.0092 SIVmac239M5SpXplasmid_reference_1269-10407 4221 . g t 1 q30 DP=4027;AC=13;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 4224 . g t 43 PASS DP=3980;AC=33;AF=0.0083 SIVmac239M5SpXplasmid_reference_1269-10407 4225 . g t 19 q30 DP=3946;AC=25;AF=0.0063 SIVmac239M5SpXplasmid_reference_1269-10407 4226 . g t 10 q30 DP=3983;AC=21;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 4227 . a g 3 q30 DP=3961;AC=16;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 4228 . c a 47 PASS DP=3961;AC=34;AF=0.0086 SIVmac239M5SpXplasmid_reference_1269-10407 4228 . c g 1 q30 DP=3961;AC=14;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 4229 . c a 71 PASS DP=3952;AC=40;AF=0.0101 SIVmac239M5SpXplasmid_reference_1269-10407 4229 . c g 9 q30 DP=3952;AC=20;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 4230 . c a 27 q30 DP=3948;AC=28;AF=0.0071 SIVmac239M5SpXplasmid_reference_1269-10407 4230 . c t 1 q30 DP=3948;AC=13;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 4231 . g t 7 q30 DP=3973;AC=19;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 4233 . t g 12 q30 DP=4010;AC=22;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 4234 . g t 5 q30 DP=4066;AC=18;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 4235 . a g 8 q30 DP=4056;AC=20;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 4237 . c a 6 q30 DP=4123;AC=19;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 4238 . t g 19 q30 DP=4123;AC=26;AF=0.0063 SIVmac239M5SpXplasmid_reference_1269-10407 4240 . t a 2 q30 DP=4401;AC=16;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 4240 . t g 45 PASS DP=4401;AC=36;AF=0.0082 SIVmac239M5SpXplasmid_reference_1269-10407 4241 . t a 3 q30 DP=4389;AC=18;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 4243 . t g 3 q30 DP=4390;AC=18;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 4244 . g t 3 q30 DP=4387;AC=18;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 4249 . g t 13 q30 DP=4275;AC=24;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 4250 . g t 17 q30 DP=4332;AC=26;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 4251 . g t 4 q30 DP=4324;AC=18;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 4255 . g t 15 q30 DP=4349;AC=25;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 4256 . g t 10 q30 DP=4383;AC=23;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 4257 . a g 1 q30 DP=4378;AC=14;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 4258 . g t 3 q30 DP=4373;AC=18;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 4259 . c a 1 q30 DP=4349;AC=15;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 4262 . t g 7 q30 DP=4368;AC=21;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 4263 . c a 12 q30 DP=4369;AC=24;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 4265 . t a 1 q30 DP=4570;AC=15;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 4265 . t g 5 q30 DP=4570;AC=20;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 4266 . c a 2 q30 DP=4613;AC=17;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 4271 . a c 1 q30 DP=4613;AC=16;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 4276 . g a 1 q30 DP=4600;AC=15;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 4276 . g t 7 q30 DP=4600;AC=22;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 4277 . g a 3 q30 DP=4668;AC=19;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 4277 . g t 6 q30 DP=4668;AC=21;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 4280 . c a 1 q30 DP=4670;AC=15;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 4284 . c a 2 q30 DP=5017;AC=18;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 4286 . t a 7 q30 DP=4969;AC=23;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 4286 . t g 4 q30 DP=4969;AC=21;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 4297 . c a 19 q30 DP=4746;AC=29;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 4298 . c a 31 PASS DP=4673;AC=33;AF=0.0071 SIVmac239M5SpXplasmid_reference_1269-10407 4299 . c a 31 PASS DP=4668;AC=33;AF=0.0071 SIVmac239M5SpXplasmid_reference_1269-10407 4307 . a c 1 q30 DP=4491;AC=15;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 4310 . c a 2 q30 DP=4509;AC=17;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 4316 . t g 25 q30 DP=4494;AC=30;AF=0.0067 SIVmac239M5SpXplasmid_reference_1269-10407 4317 . t g 4 q30 DP=4440;AC=19;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 4319 . t a 2 q30 DP=4476;AC=16;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 4319 . t g 2 q30 DP=4476;AC=16;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 4323 . a c 1 q30 DP=4491;AC=16;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 4326 . t g 15 q30 DP=4497;AC=26;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 4327 . t g 12 q30 DP=4432;AC=24;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 4344 . g t 3 q30 DP=3981;AC=16;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 4346 . t g 2 q30 DP=3845;AC=14;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 4347 . g a 2 q30 DP=3867;AC=14;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 4347 . g t 6 q30 DP=3867;AC=18;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 4348 . g t 2 q30 DP=3870;AC=15;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 4350 . t g 5 q30 DP=3872;AC=17;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 4357 . t g 2 q30 DP=3570;AC=13;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 4358 . c a 1 q30 DP=3585;AC=12;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 4359 . c a 14 q30 DP=3559;AC=21;AF=0.0059 SIVmac239M5SpXplasmid_reference_1269-10407 4359 . c t 3 q30 DP=3559;AC=14;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 4360 . c a 30 PASS DP=3574;AC=27;AF=0.0076 SIVmac239M5SpXplasmid_reference_1269-10407 4367 . a g 1 q30 DP=3389;AC=12;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 4373 . c a 2 q30 DP=3259;AC=12;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 4374 . c a 6 q30 DP=3218;AC=15;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 4376 . g t 11 q30 DP=3167;AC=18;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 4378 . g t 2 q30 DP=3090;AC=11;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 4380 . g t 5 q30 DP=3068;AC=14;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 4381 . g t 1 q30 DP=3073;AC=10;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 4382 . c a 4 q30 DP=3064;AC=13;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 4389 . g t 17 q30 DP=2531;AC=17;AF=0.0067 SIVmac239M5SpXplasmid_reference_1269-10407 4392 . g t 34 PASS DP=2510;AC=22;AF=0.0088 SIVmac239M5SpXplasmid_reference_1269-10407 4394 . c a 1 q30 DP=2449;AC=8;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 4399 . c a 1 q30 DP=2367;AC=8;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 4400 . c a 11 q30 DP=2363;AC=14;AF=0.0059 SIVmac239M5SpXplasmid_reference_1269-10407 4402 . c t 1 q30 DP=2246;AC=7;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 4408 . a c 2 q30 DP=2173;AC=8;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 4409 . t g 8 q30 DP=2159;AC=12;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 4411 . t g 7 q30 DP=2124;AC=11;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 4414 . g t 1 q30 DP=2113;AC=7;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 4417 . a c 2 q30 DP=2135;AC=8;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 4423 . a g 3 q30 DP=2102;AC=9;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 4424 . a g 2 q30 DP=2117;AC=8;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 4426 . t g 5 q30 DP=2081;AC=10;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 4428 . a g 1 q30 DP=2081;AC=7;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 4430 . g t 2 q30 DP=2099;AC=8;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 4431 . a g 3 q30 DP=2102;AC=9;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 4432 . t a 5 q30 DP=2116;AC=10;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 4432 . t g 24 q30 DP=2116;AC=17;AF=0.0080 SIVmac239M5SpXplasmid_reference_1269-10407 4434 . t g 3 q30 DP=2211;AC=9;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 4437 . a c 1 q30 DP=2288;AC=7;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 4440 . a c 18 q30 DP=2258;AC=16;AF=0.0071 SIVmac239M5SpXplasmid_reference_1269-10407 4440 . a g 1 q30 DP=2258;AC=7;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 4441 . g t 11 q30 DP=2336;AC=14;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 4443 . t a 4 q30 DP=2317;AC=10;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 4443 . t g 1 q30 DP=2317;AC=7;AF=0.0030 SIVmac239M5SpXplasmid_reference_1269-10407 4444 . t a 1 q30 DP=2319;AC=7;AF=0.0030 SIVmac239M5SpXplasmid_reference_1269-10407 4444 . t g 34 PASS DP=2319;AC=21;AF=0.0091 SIVmac239M5SpXplasmid_reference_1269-10407 4445 . t a 1 q30 DP=2320;AC=8;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 4445 . t g 1 q30 DP=2320;AC=8;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 4448 . t g 19 q30 DP=2394;AC=17;AF=0.0071 SIVmac239M5SpXplasmid_reference_1269-10407 4450 . t g 1 q30 DP=2354;AC=8;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 4452 . t g 11 q30 DP=2356;AC=14;AF=0.0059 SIVmac239M5SpXplasmid_reference_1269-10407 4455 . c a 26 q30 DP=2356;AC=19;AF=0.0081 SIVmac239M5SpXplasmid_reference_1269-10407 4456 . c a 11 q30 DP=2365;AC=14;AF=0.0059 SIVmac239M5SpXplasmid_reference_1269-10407 4456 . c t 1 q30 DP=2365;AC=8;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 4457 . c a 13 q30 DP=2366;AC=15;AF=0.0063 SIVmac239M5SpXplasmid_reference_1269-10407 4459 . t g 5 q30 DP=2522;AC=12;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 4460 . t g 5 q30 DP=2515;AC=12;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 4461 . t g 5 q30 DP=2518;AC=12;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 4465 . g t 1 q30 DP=2516;AC=8;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 4467 . t g 8 q30 DP=2472;AC=13;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 4468 . c a 15 q30 DP=2464;AC=16;AF=0.0065 SIVmac239M5SpXplasmid_reference_1269-10407 4469 . g t 2 q30 DP=2475;AC=9;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 4473 . g t 59 PASS DP=2523;AC=28;AF=0.0111 SIVmac239M5SpXplasmid_reference_1269-10407 4474 . g a 7 q30 DP=2571;AC=13;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 4474 . g t 25 q30 DP=2571;AC=20;AF=0.0078 SIVmac239M5SpXplasmid_reference_1269-10407 4476 . c a 5 q30 DP=2591;AC=12;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 4479 . g t 1 q30 DP=2615;AC=9;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 4481 . t a 2 q30 DP=2648;AC=10;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 4482 . g t 13 q30 DP=2637;AC=16;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 4483 . g t 8 q30 DP=2651;AC=14;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 4484 . a g 10 q30 DP=2666;AC=15;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 4485 . c a 10 q30 DP=2673;AC=15;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 4485 . c t 1 q30 DP=2673;AC=8;AF=0.0030 SIVmac239M5SpXplasmid_reference_1269-10407 4486 . c a 10 q30 DP=2678;AC=15;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 4488 . g t 1 q30 DP=2674;AC=8;AF=0.0030 SIVmac239M5SpXplasmid_reference_1269-10407 4495 . a t 1 q30 DP=2820;AC=9;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 4496 . g t 1 q30 DP=2888;AC=10;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 4497 . t g 1 q30 DP=2880;AC=10;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 4500 . t g 2 q30 DP=2921;AC=11;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 4503 . t g 11 q30 DP=2981;AC=17;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 4505 . c a 13 q30 DP=2992;AC=18;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 4506 . c a 38 PASS DP=3003;AC=26;AF=0.0087 SIVmac239M5SpXplasmid_reference_1269-10407 4511 . c a 1 q30 DP=3324;AC=11;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 4513 . g t 1 q30 DP=3282;AC=11;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 4515 . a c 2 q30 DP=3297;AC=12;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 4517 . g t 4 q30 DP=3187;AC=14;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 4518 . g t 4 q30 DP=3171;AC=14;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 4522 . c a 1 q30 DP=3194;AC=10;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 4523 . c a 1 q30 DP=3180;AC=11;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 4525 . t g 12 q30 DP=3350;AC=19;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 4526 . t g 6 q30 DP=3354;AC=16;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 4533 . t g 4 q30 DP=3506;AC=15;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 4536 . a c 1 q30 DP=3509;AC=11;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 4537 . a c 4 q30 DP=3516;AC=15;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 4538 . g t 38 PASS DP=3532;AC=29;AF=0.0082 SIVmac239M5SpXplasmid_reference_1269-10407 4539 . g t 9 q30 DP=3626;AC=19;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 4540 . g t 1 q30 DP=3671;AC=13;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 4541 . t a 1 q30 DP=3567;AC=11;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 4541 . t g 1 q30 DP=3567;AC=12;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 4543 . t g 19 q30 DP=3569;AC=23;AF=0.0064 SIVmac239M5SpXplasmid_reference_1269-10407 4545 . g t 30 PASS DP=3591;AC=27;AF=0.0075 SIVmac239M5SpXplasmid_reference_1269-10407 4549 . t g 3 q30 DP=3522;AC=14;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 4550 . t a 1 q30 DP=3512;AC=11;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 4550 . t g 1 q30 DP=3512;AC=12;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 4554 . c a 1 q30 DP=3513;AC=12;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 4556 . c a 7 q30 DP=3491;AC=17;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 4557 . c a 9 q30 DP=3490;AC=18;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 4565 . g t 18 q30 DP=3587;AC=23;AF=0.0064 SIVmac239M5SpXplasmid_reference_1269-10407 4566 . g a 3 q30 DP=3569;AC=14;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 4566 . g t 14 q30 DP=3569;AC=21;AF=0.0059 SIVmac239M5SpXplasmid_reference_1269-10407 4567 . g t 2 q30 DP=3565;AC=13;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 4569 . g t 10 q30 DP=3503;AC=19;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 4571 . c a 1 q30 DP=3663;AC=12;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 4573 . c a 11 q30 DP=3683;AC=20;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 4578 . c a 1 q30 DP=4205;AC=14;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 4588 . g t 3 q30 DP=3745;AC=15;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 4590 . g t 3 q30 DP=3775;AC=15;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 4591 . g t 4 q30 DP=3785;AC=16;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 4599 . g t 20 q30 DP=3637;AC=24;AF=0.0066 SIVmac239M5SpXplasmid_reference_1269-10407 4605 . c a 5 q30 DP=3553;AC=16;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 4613 . t g 2 q30 DP=3519;AC=13;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 4614 . t g 2 q30 DP=3497;AC=13;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 4617 . g t 10 q30 DP=3483;AC=19;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 4632 . c a 18 q30 DP=3207;AC=21;AF=0.0065 SIVmac239M5SpXplasmid_reference_1269-10407 4637 . t g 1 q30 DP=3033;AC=10;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 4640 . g t 2 q30 DP=3024;AC=11;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 4642 . a g 1 q30 DP=2939;AC=10;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 4649 . t g 1 q30 DP=2860;AC=9;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 4660 . c a 2 q30 DP=2347;AC=9;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 4668 . t g 2 q30 DP=1944;AC=7;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 4670 . c a 2 q30 DP=1896;AC=7;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 4671 . c a 3 q30 DP=1722;AC=7;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 4672 . t a 2 q30 DP=1696;AC=6;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 4672 . t g 1 q30 DP=1696;AC=5;AF=0.0029 SIVmac239M5SpXplasmid_reference_1269-10407 4676 . t g 1 q30 DP=1642;AC=5;AF=0.0030 SIVmac239M5SpXplasmid_reference_1269-10407 4684 . g t 6 q30 DP=1329;AC=7;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 4685 . g t 17 q30 DP=1386;AC=11;AF=0.0079 SIVmac239M5SpXplasmid_reference_1269-10407 4686 . g t 5 q30 DP=1389;AC=7;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 4687 . a c 1 q30;ac5 DP=1387;AC=4;AF=0.0029 SIVmac239M5SpXplasmid_reference_1269-10407 4687 . a g 1 q30;ac5 DP=1387;AC=4;AF=0.0029 SIVmac239M5SpXplasmid_reference_1269-10407 4689 . a g 1 q30;ac5 DP=1416;AC=4;AF=0.0028 SIVmac239M5SpXplasmid_reference_1269-10407 4692 . t c 1 q30 DP=1438;AC=5;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 4693 . g t 6 q30 DP=1498;AC=8;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 4694 . a g 1 q30;ac5 DP=1438;AC=4;AF=0.0028 SIVmac239M5SpXplasmid_reference_1269-10407 4695 . g t 7 q30 DP=1436;AC=8;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 4696 . a c 1 q30;ac5 DP=1436;AC=4;AF=0.0028 SIVmac239M5SpXplasmid_reference_1269-10407 4697 . a c 2 q30 DP=1342;AC=5;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 4697 . a g 3 q30 DP=1342;AC=6;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 4698 . g t 3 q30 DP=1357;AC=6;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 4699 . g a 2 q30 DP=1348;AC=5;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 4701 . c a 1 q30;ac5 DP=1328;AC=4;AF=0.0030 SIVmac239M5SpXplasmid_reference_1269-10407 4702 . c a 49 PASS DP=1400;AC=18;AF=0.0129 SIVmac239M5SpXplasmid_reference_1269-10407 4704 . t a 1 q30;ac5 DP=1412;AC=4;AF=0.0028 SIVmac239M5SpXplasmid_reference_1269-10407 4704 . t c 1 q30;ac5 DP=1412;AC=4;AF=0.0028 SIVmac239M5SpXplasmid_reference_1269-10407 4704 . t g 1 q30;ac5 DP=1412;AC=4;AF=0.0028 SIVmac239M5SpXplasmid_reference_1269-10407 4705 . c a 1 q30;ac5 DP=1412;AC=4;AF=0.0028 SIVmac239M5SpXplasmid_reference_1269-10407 4706 . a g 3 q30 DP=1404;AC=6;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 4707 . g t 6 q30 DP=1473;AC=8;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 4708 . g a 1 q30 DP=1436;AC=5;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 4708 . g t 12 q30 DP=1436;AC=10;AF=0.0070 SIVmac239M5SpXplasmid_reference_1269-10407 4709 . g a 3 q30 DP=1430;AC=6;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 4709 . g t 3 q30 DP=1430;AC=6;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 4722 . t c 1 q30;ac5 DP=1323;AC=4;AF=0.0030 SIVmac239M5SpXplasmid_reference_1269-10407 4724 . t g 3 q30 DP=1342;AC=6;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 4735 . g t 2 q30 DP=1371;AC=5;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 4739 . c t 1 q30;ac5 DP=1372;AC=4;AF=0.0029 SIVmac239M5SpXplasmid_reference_1269-10407 4740 . c a 8 q30 DP=1359;AC=8;AF=0.0059 SIVmac239M5SpXplasmid_reference_1269-10407 4740 . c t 5 q30 DP=1359;AC=7;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 4743 . g t 2 q30 DP=1345;AC=5;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 4745 . g t 1 q30;ac5 DP=1246;AC=4;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 4748 . c a 1 q30;ac5 DP=1349;AC=4;AF=0.0030 SIVmac239M5SpXplasmid_reference_1269-10407 4751 . a t 1 q30;ac5 DP=1369;AC=4;AF=0.0029 SIVmac239M5SpXplasmid_reference_1269-10407 4752 . a c 1 q30;ac5 DP=1374;AC=4;AF=0.0029 SIVmac239M5SpXplasmid_reference_1269-10407 4754 . t g 1 q30 DP=1466;AC=5;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 4757 . c a 1 q30 DP=1503;AC=5;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 4758 . a c 1 q30 DP=1508;AC=5;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 4760 . g t 5 q30 DP=1631;AC=8;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 4762 . a c 3 q30 DP=1653;AC=7;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 4763 . c a 1 q30 DP=1671;AC=5;AF=0.0030 SIVmac239M5SpXplasmid_reference_1269-10407 4766 . a c 1 q30 DP=1796;AC=6;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 4769 . c a 1 q30 DP=1995;AC=6;AF=0.0030 SIVmac239M5SpXplasmid_reference_1269-10407 4770 . t g 1 q30 DP=2001;AC=6;AF=0.0030 SIVmac239M5SpXplasmid_reference_1269-10407 4772 . c a 1 q30 DP=2077;AC=7;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 4775 . t g 8 q30 DP=2227;AC=12;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 4778 . t g 1 q30 DP=2333;AC=8;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 4784 . c a 2 q30 DP=2476;AC=9;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 4785 . t a 1 q30 DP=2458;AC=8;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 4788 . a c 4 q30 DP=2499;AC=11;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 4789 . a c 17 q30 DP=2505;AC=17;AF=0.0068 SIVmac239M5SpXplasmid_reference_1269-10407 4791 . t a 6 q30 DP=2617;AC=13;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 4791 . t g 3 q30 DP=2617;AC=11;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 4793 . g t 1 q30 DP=2629;AC=8;AF=0.0030 SIVmac239M5SpXplasmid_reference_1269-10407 4794 . t g 3 q30 DP=2627;AC=11;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 4798 . c a 2 q30 DP=2674;AC=10;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 4799 . g t 8 q30 DP=2658;AC=14;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 4808 . t a 6 q30 DP=2905;AC=14;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 4808 . t g 10 q30 DP=2905;AC=16;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 4809 . c a 6 q30 DP=2909;AC=14;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 4810 . c a 19 q30 DP=2919;AC=20;AF=0.0069 SIVmac239M5SpXplasmid_reference_1269-10407 4811 . c a 9 q30 DP=2932;AC=16;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 4815 . g t 2 q30 DP=2995;AC=11;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 4816 . a g 4 q30 DP=3002;AC=13;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 4816 . a t 2 q30 DP=3002;AC=11;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 4817 . g t 1 q30 DP=3011;AC=10;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 4818 . a g 2 q30 DP=3004;AC=11;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 4819 . g t 1 q30 DP=3046;AC=10;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 4822 . t a 1 q30 DP=3080;AC=10;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 4822 . t g 20 q30 DP=3080;AC=21;AF=0.0068 SIVmac239M5SpXplasmid_reference_1269-10407 4824 . c a 1 q30 DP=3085;AC=10;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 4824 . c g 1 q30 DP=3085;AC=10;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 4825 . c a 32 PASS DP=3099;AC=25;AF=0.0081 SIVmac239M5SpXplasmid_reference_1269-10407 4827 . c a 6 q30 DP=3192;AC=15;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 4828 . c a 2 q30 DP=3193;AC=12;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 4829 . t a 1 q30 DP=3193;AC=10;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 4829 . t g 37 PASS DP=3193;AC=27;AF=0.0085 SIVmac239M5SpXplasmid_reference_1269-10407 4838 . t a 4 q30 DP=3292;AC=14;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 4838 . t g 35 PASS DP=3292;AC=27;AF=0.0082 SIVmac239M5SpXplasmid_reference_1269-10407 4839 . g t 4 q30 DP=3322;AC=14;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 4843 . a c 2 q30 DP=3366;AC=12;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 4846 . a c 5 q30 DP=3373;AC=15;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 4846 . a g 2 q30 DP=3373;AC=13;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 4849 . c a 1 q30 DP=3569;AC=12;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 4852 . t g 9 q30 DP=3622;AC=19;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 4856 . a g 4 q30 DP=3604;AC=15;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 4856 . a t 2 q30 DP=3604;AC=13;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 4858 . a c 1 q30 DP=3483;AC=12;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 4859 . g t 1 q30 DP=3493;AC=11;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 4860 . g t 1 q30 DP=3502;AC=12;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 4861 . c a 22 q30 DP=3502;AC=24;AF=0.0069 SIVmac239M5SpXplasmid_reference_1269-10407 4862 . c a 9 q30 DP=3496;AC=18;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 4863 . t g 15 q30 DP=3475;AC=21;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 4864 . t g 5 q30 DP=3497;AC=16;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 4865 . c a 2 q30 DP=3502;AC=13;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 4866 . g a 2 q30 DP=3514;AC=13;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 4866 . g t 1 q30 DP=3514;AC=11;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 4868 . a c 12 q30 DP=3514;AC=20;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 4869 . t g 1 q30 DP=3555;AC=11;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 4871 . g a 1 q30 DP=3596;AC=12;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 4872 . c a 1 q30 DP=3601;AC=12;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 4873 . t g 2 q30 DP=3608;AC=13;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 4875 . a c 1 q30 DP=3741;AC=12;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 4877 . c a 5 q30 DP=3759;AC=17;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 4881 . a c 3 q30 DP=3796;AC=15;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 4881 . a g 2 q30 DP=3796;AC=14;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 4882 . c a 6 q30 DP=3859;AC=18;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 4885 . t a 10 q30 DP=3937;AC=21;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 4885 . t g 4 q30 DP=3937;AC=17;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 4889 . g t 11 q30 DP=3897;AC=21;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 4890 . g t 12 q30 DP=3936;AC=22;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 4893 . a t 4 q30 DP=3859;AC=16;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 4894 . t a 1 q30 DP=3861;AC=12;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 4894 . t g 5 q30 DP=3861;AC=17;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 4898 . c a 1 q30 DP=3938;AC=14;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 4901 . a g 8 q30 DP=3802;AC=19;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 4902 . g t 4 q30 DP=3783;AC=16;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 4903 . a g 7 q30 DP=3765;AC=18;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 4906 . c a 7 q30 DP=3750;AC=18;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 4907 . g a 1 q30 DP=3728;AC=13;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 4907 . g t 4 q30 DP=3728;AC=16;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 4914 . c a 19 q30 DP=3754;AC=24;AF=0.0064 SIVmac239M5SpXplasmid_reference_1269-10407 4915 . a c 1 q30 DP=3745;AC=13;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 4915 . a g 2 q30 DP=3745;AC=14;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 4916 . c a 5 q30 DP=3806;AC=17;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 4917 . c a 2 q30 DP=3790;AC=14;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 4918 . t a 3 q30 DP=3870;AC=16;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 4918 . t g 20 q30 DP=3870;AC=25;AF=0.0065 SIVmac239M5SpXplasmid_reference_1269-10407 4920 . c a 2 q30 DP=3895;AC=15;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 4921 . c a 22 q30 DP=3888;AC=26;AF=0.0067 SIVmac239M5SpXplasmid_reference_1269-10407 4922 . a c 5 q30 DP=3850;AC=17;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 4924 . g t 4 q30 DP=3828;AC=16;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 4925 . g a 2 q30 DP=3787;AC=14;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 4926 . g t 10 q30 DP=3783;AC=20;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 4927 . a c 4 q30 DP=3686;AC=16;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 4929 . c a 6 q30 DP=3678;AC=17;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 4930 . t g 1 q30 DP=3681;AC=13;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 4932 . a c 2 q30 DP=3722;AC=14;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 4933 . t g 1 q30 DP=3736;AC=12;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 4934 . t a 1 q30 DP=3727;AC=12;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 4935 . t a 4 q30 DP=3710;AC=16;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 4935 . t g 10 q30 DP=3710;AC=20;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 4936 . t a 12 q30 DP=3712;AC=21;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 4936 . t g 5 q30 DP=3712;AC=17;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 4937 . c a 28 q30 DP=3716;AC=27;AF=0.0073 SIVmac239M5SpXplasmid_reference_1269-10407 4938 . c a 19 q30 DP=3708;AC=24;AF=0.0065 SIVmac239M5SpXplasmid_reference_1269-10407 4941 . g t 3 q30 DP=3740;AC=15;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 4942 . t a 8 q30 DP=3731;AC=19;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 4942 . t g 1 q30 DP=3731;AC=12;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 4944 . t g 5 q30 DP=3728;AC=17;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 4945 . g t 1 q30 DP=3720;AC=13;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 4946 . g t 4 q30 DP=3716;AC=16;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 4947 . c a 17 q30 DP=3716;AC=23;AF=0.0062 SIVmac239M5SpXplasmid_reference_1269-10407 4948 . a c 6 q30 DP=3670;AC=17;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 4949 . a c 4 q30 DP=3662;AC=16;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 4950 . a c 7 q30 DP=3640;AC=18;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 4953 . t a 17 q30 DP=3719;AC=23;AF=0.0062 SIVmac239M5SpXplasmid_reference_1269-10407 4953 . t c 2 q30 DP=3719;AC=14;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 4954 . c a 10 q30 DP=3725;AC=20;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 4956 . t c 1 q30 DP=3758;AC=13;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 4956 . t g 3 q30 DP=3758;AC=15;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 4957 . g t 4 q30 DP=3767;AC=16;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 4958 . g a 3 q30 DP=3776;AC=15;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 4958 . g t 1 q30 DP=3776;AC=12;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 4959 . g a 4 q30 DP=3796;AC=16;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 4963 . a c 1 q30 DP=3634;AC=12;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 4966 . g a 2 q30 DP=3592;AC=13;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 4967 . g t 8 q30 DP=3572;AC=18;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 4972 . a c 3 q30 DP=3479;AC=14;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 4974 . g t 11 q30 DP=3468;AC=19;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 4976 . a t 1 q30 DP=3429;AC=12;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 4983 . a c 2 q30 DP=3323;AC=12;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 4987 . c a 13 q30 DP=3406;AC=20;AF=0.0059 SIVmac239M5SpXplasmid_reference_1269-10407 4989 . c a 5 q30 DP=3397;AC=15;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 4990 . c a 8 q30 DP=3329;AC=17;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 4994 . c a 2 q30 DP=3379;AC=12;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 4995 . t a 1 q30 DP=3218;AC=10;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 5001 . a c 14 q30 DP=3371;AC=20;AF=0.0059 SIVmac239M5SpXplasmid_reference_1269-10407 5002 . a c 1 q30 DP=3266;AC=10;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 5004 . t g 1 q30 DP=3345;AC=11;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 5011 . a c 1 q30 DP=3084;AC=10;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 5015 . g t 3 q30 DP=3003;AC=12;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 5016 . t a 1 q30 DP=2947;AC=10;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 5016 . t g 1 q30 DP=2947;AC=10;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 5018 . t g 4 q30 DP=3010;AC=13;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 5020 . t g 1 q30 DP=2959;AC=9;AF=0.0030 SIVmac239M5SpXplasmid_reference_1269-10407 5025 . c a 3 q30 DP=2914;AC=12;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 5028 . a c 2 q30 DP=2770;AC=10;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 5028 . a g 1 q30 DP=2770;AC=9;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 5029 . a c 2 q30 DP=2771;AC=10;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 5029 . a g 7 q30 DP=2771;AC=14;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 5030 . g t 2 q30 DP=2841;AC=11;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 5031 . g t 1 q30 DP=2811;AC=9;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 5032 . c a 7 q30 DP=2817;AC=14;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 5033 . t g 7 q30 DP=2804;AC=14;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 5034 . t g 13 q30 DP=2826;AC=17;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 5037 . t a 1 q30 DP=2933;AC=9;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 5037 . t g 12 q30 DP=2933;AC=17;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 5038 . t g 6 q30 DP=2917;AC=14;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 5039 . t g 12 q30 DP=2856;AC=17;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 5041 . t g 2 q30 DP=2841;AC=11;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 5043 . c a 1 q30 DP=2830;AC=10;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 5045 . t g 13 q30 DP=2771;AC=17;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 5046 . t g 4 q30 DP=2761;AC=12;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 5048 . c a 4 q30 DP=2822;AC=12;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 5053 . a c 3 q30 DP=2787;AC=11;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 5058 . t g 2 q30 DP=2738;AC=10;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 5059 . g a 1 q30 DP=2792;AC=9;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 5063 . a c 1 q30 DP=2785;AC=9;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 5067 . c a 2 q30 DP=2795;AC=10;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 5068 . t g 7 q30 DP=2737;AC=14;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 5070 . g t 1 q30 DP=2745;AC=9;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 5071 . g t 7 q30 DP=2759;AC=14;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 5072 . g a 1 q30 DP=2753;AC=9;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 5072 . g t 2 q30 DP=2753;AC=10;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 5074 . a t 5 q30 DP=2599;AC=12;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 5076 . g t 3 q30 DP=2672;AC=11;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 5077 . g t 3 q30 DP=2707;AC=11;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 5081 . t g 3 q30 DP=2714;AC=11;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 5082 . g t 6 q30 DP=2680;AC=13;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 5083 . g t 9 q30 DP=2751;AC=15;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 5084 . g t 3 q30 DP=2725;AC=11;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 5085 . g t 1 q30 DP=2707;AC=9;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 5086 . c a 4 q30 DP=2697;AC=12;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 5086 . c g 2 q30 DP=2697;AC=10;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 5088 . g t 1 q30 DP=2727;AC=9;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 5089 . g t 9 q30 DP=2725;AC=15;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 5091 . g t 7 q30 DP=2811;AC=14;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 5093 . a c 2 q30 DP=2782;AC=10;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 5095 . g a 2 q30 DP=2785;AC=10;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 5100 . c a 30 PASS DP=2849;AC=23;AF=0.0081 SIVmac239M5SpXplasmid_reference_1269-10407 5101 . c a 1 q30 DP=2851;AC=9;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 5104 . g t 2 q30 DP=2882;AC=11;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 5106 . c a 5 q30 DP=2869;AC=13;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 5108 . t g 3 q30 DP=2911;AC=12;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 5109 . c a 3 q30 DP=3000;AC=12;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 5111 . t c 4 q30 DP=3032;AC=13;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 5112 . c a 4 q30 DP=3098;AC=13;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 5113 . c a 1 q30 DP=3096;AC=10;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 5114 . t a 5 q30 DP=3098;AC=14;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 5114 . t g 14 q30 DP=3098;AC=19;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 5115 . c a 6 q30 DP=3108;AC=15;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 5117 . t c 6 q30 DP=3118;AC=15;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 5117 . t g 3 q30 DP=3118;AC=13;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 5118 . c a 10 q30 DP=3115;AC=17;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 5119 . c a 2 q30 DP=3112;AC=12;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 5120 . c a 25 q30 DP=3145;AC=23;AF=0.0073 SIVmac239M5SpXplasmid_reference_1269-10407 5120 . c t 3 q30 DP=3145;AC=13;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 5121 . c a 8 q30 DP=3130;AC=16;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 5122 . c a 3 q30 DP=3424;AC=14;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 5123 . t a 9 q30 DP=3470;AC=18;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 5123 . t g 9 q30 DP=3470;AC=18;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 5124 . c a 1 q30 DP=3489;AC=12;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 5127 . g t 3 q30 DP=3587;AC=14;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 5128 . g t 5 q30 DP=3645;AC=16;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 5129 . a c 3 q30 DP=3631;AC=15;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 5131 . t a 1 q30 DP=3572;AC=12;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 5131 . t g 6 q30 DP=3572;AC=17;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 5136 . t g 23 q30 DP=3862;AC=26;AF=0.0067 SIVmac239M5SpXplasmid_reference_1269-10407 5139 . a c 6 q30 DP=3931;AC=18;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 5143 . a c 2 q30 DP=3923;AC=15;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 5144 . a c 1 q30 DP=3940;AC=14;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 5148 . a c 1 q30 DP=3935;AC=14;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 5149 . g t 1 q30 DP=3949;AC=13;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 5151 . c a 2 q30 DP=3934;AC=15;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 5152 . c a 7 q30 DP=3923;AC=19;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 5153 . t a 9 q30 DP=3922;AC=20;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 5153 . t g 17 q30 DP=3922;AC=24;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 5154 . c a 3 q30 DP=3987;AC=16;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 5159 . a c 3 q30 DP=4055;AC=16;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 5160 . a c 13 q30 DP=4049;AC=23;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 5161 . a c 28 q30 DP=4087;AC=29;AF=0.0071 SIVmac239M5SpXplasmid_reference_1269-10407 5162 . t g 13 q30 DP=4082;AC=23;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 5164 . a c 6 q30 DP=4098;AC=19;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 5165 . a c 1 q30 DP=4101;AC=14;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 5166 . g t 11 q30 DP=4110;AC=22;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 5167 . g a 3 q30 DP=4122;AC=17;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 5167 . g t 7 q30 DP=4122;AC=20;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 5170 . c a 3 q30 DP=4221;AC=17;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 5172 . c a 1 q30 DP=4314;AC=15;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 5174 . a c 12 q30 DP=4376;AC=24;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 5175 . a c 32 PASS DP=4375;AC=32;AF=0.0073 SIVmac239M5SpXplasmid_reference_1269-10407 5176 . g t 3 q30 DP=4410;AC=18;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 5177 . g a 6 q30 DP=4403;AC=20;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 5177 . g t 1 q30 DP=4403;AC=15;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 5178 . g t 10 q30 DP=4405;AC=23;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 5181 . c a 4 q30 DP=4514;AC=19;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 5182 . c a 3 q30 DP=4482;AC=18;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 5186 . g a 1 q30 DP=4583;AC=15;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 5187 . g t 1 q30 DP=4601;AC=15;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 5188 . a c 1 q30 DP=4625;AC=16;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 5191 . a c 2 q30 DP=4731;AC=17;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 5192 . a c 2 q30 DP=4740;AC=17;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 5193 . t g 2 q30 DP=4721;AC=18;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 5194 . g t 19 q30 DP=4773;AC=29;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 5195 . g t 2 q30 DP=4791;AC=18;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 5197 . t c 4 q30 DP=4924;AC=21;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 5201 . g t 1 q30 DP=4910;AC=17;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 5203 . a c 2 q30 DP=4842;AC=18;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 5206 . t a 64 PASS DP=4868;AC=44;AF=0.0090 SIVmac239M5SpXplasmid_reference_1269-10407 5206 . t c 12 q30 DP=4868;AC=26;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 5206 . t g 2 q30 DP=4868;AC=18;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 5207 . t a 7 q30 DP=4856;AC=23;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 5220 . a c 1 q30 DP=4794;AC=16;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 5221 . a c 2 q30 DP=4802;AC=18;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 5224 . a c 2 q30 DP=4851;AC=18;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 5227 . a c 2 q30 DP=4830;AC=18;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 5231 . t a 7 q30 DP=4853;AC=23;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 5232 . t a 2 q30 DP=4854;AC=18;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 5232 . t g 1 q30 DP=4854;AC=16;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 5241 . t g 1 q30 DP=4844;AC=16;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 5246 . t g 3 q30 DP=4864;AC=19;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 5248 . c a 16 q30 DP=4833;AC=28;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 5250 . c a 1 q30 DP=4856;AC=17;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 5252 . c a 1 q30 DP=4909;AC=17;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 5259 . a c 4 q30 DP=4839;AC=20;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 5264 . a t 1 q30 DP=4763;AC=17;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 5265 . c a 1 q30 DP=4755;AC=16;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 5266 . t g 5 q30 DP=4693;AC=21;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 5268 . g a 1 q30 DP=4789;AC=16;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 5271 . a c 2 q30 DP=4713;AC=17;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 5272 . a c 1 q30 DP=4745;AC=15;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 5287 . g t 1 q30 DP=4731;AC=16;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 5288 . a c 1 q30 DP=4331;AC=14;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 5290 . a c 2 q30 DP=4013;AC=15;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 5292 . g t 2 q30 DP=4039;AC=15;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 5293 . g t 1 q30 DP=4038;AC=14;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 5294 . a g 1 q30 DP=4021;AC=14;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 5296 . a g 2 q30 DP=3834;AC=14;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 5299 . c a 1 q30 DP=4031;AC=13;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 5300 . c a 15 q30 DP=4060;AC=24;AF=0.0059 SIVmac239M5SpXplasmid_reference_1269-10407 5301 . c a 5 q30 DP=4030;AC=18;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 5302 . t g 1 q30 DP=3998;AC=13;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 5304 . g t 1 q30 DP=4006;AC=13;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 5305 . a c 5 q30 DP=4000;AC=18;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 5306 . g t 1 q30 DP=3992;AC=14;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 5307 . g a 1 q30 DP=3916;AC=13;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 5308 . g a 2 q30 DP=3875;AC=15;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 5308 . g t 6 q30 DP=3875;AC=18;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 5309 . a g 5 q30 DP=3755;AC=17;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 5313 . g t 4 q30 DP=3788;AC=16;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 5314 . g t 1 q30 DP=3789;AC=13;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 5316 . g t 1 q30 DP=3824;AC=12;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 5320 . t g 8 q30 DP=3754;AC=19;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 5323 . t g 2 q30 DP=3906;AC=14;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 5329 . t g 1 q30 DP=3855;AC=12;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 5331 . c a 7 q30 DP=3742;AC=18;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 5332 . t c 1 q30 DP=3723;AC=12;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 5333 . c a 1 q30 DP=3746;AC=12;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 5339 . a g 12 q30 DP=3714;AC=21;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 5339 . a t 1 q30 DP=3714;AC=12;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 5340 . g t 3 q30 DP=3720;AC=15;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 5344 . t c 1 q30 DP=3795;AC=13;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 5344 . t g 18 q30 DP=3795;AC=24;AF=0.0063 SIVmac239M5SpXplasmid_reference_1269-10407 5345 . c a 2 q30 DP=3873;AC=14;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 5346 . t g 6 q30 DP=3866;AC=18;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 5347 . t a 2 q30 DP=3874;AC=15;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 5347 . t g 2 q30 DP=3874;AC=15;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 5354 . t g 20 q30 DP=3851;AC=25;AF=0.0065 SIVmac239M5SpXplasmid_reference_1269-10407 5355 . t a 1 q30 DP=3848;AC=12;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 5355 . t g 8 q30 DP=3848;AC=19;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 5356 . t g 2 q30 DP=3865;AC=14;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 5357 . c a 1 q30 DP=3867;AC=12;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 5361 . g t 8 q30 DP=3835;AC=19;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 5362 . g t 3 q30 DP=3849;AC=15;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 5364 . g t 6 q30 DP=3806;AC=18;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 5365 . g t 6 q30 DP=3839;AC=18;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 5366 . a c 3 q30 DP=3832;AC=15;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 5373 . c a 2 q30 DP=3894;AC=14;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 5375 . c a 1 q30 DP=3985;AC=13;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 5376 . t g 19 q30 DP=3972;AC=25;AF=0.0063 SIVmac239M5SpXplasmid_reference_1269-10407 5377 . c a 1 q30 DP=3980;AC=14;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 5381 . a c 7 q30 DP=3940;AC=19;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 5381 . a g 1 q30 DP=3940;AC=13;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 5382 . a t 1 q30 DP=3934;AC=14;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 5383 . t g 12 q30 DP=3929;AC=22;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 5384 . c a 1 q30 DP=3820;AC=13;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 5385 . g t 3 q30 DP=3822;AC=15;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 5386 . g a 1 q30 DP=3817;AC=13;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 5387 . c a 4 q30 DP=3812;AC=16;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 5388 . c a 5 q30 DP=3812;AC=17;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 5391 . c a 4 q30 DP=3918;AC=17;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 5392 . c a 4 q30 DP=3934;AC=17;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 5394 . g t 10 q30 DP=3958;AC=21;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 5395 . g a 1 q30 DP=3980;AC=13;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 5395 . g t 10 q30 DP=3980;AC=21;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 5396 . g a 1 q30 DP=3967;AC=13;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 5396 . g t 30 PASS DP=3967;AC=29;AF=0.0073 SIVmac239M5SpXplasmid_reference_1269-10407 5397 . g a 3 q30 DP=3974;AC=16;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 5397 . g t 27 q30 DP=3974;AC=28;AF=0.0070 SIVmac239M5SpXplasmid_reference_1269-10407 5398 . g t 1 q30 DP=4011;AC=14;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 5399 . a c 27 q30 DP=3981;AC=28;AF=0.0070 SIVmac239M5SpXplasmid_reference_1269-10407 5399 . a g 2 q30 DP=3981;AC=15;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 5399 . a t 2 q30 DP=3981;AC=15;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 5401 . g t 2 q30 DP=4006;AC=15;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 5406 . c a 2 q30 DP=4048;AC=15;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 5409 . c a 5 q30 DP=4222;AC=19;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 5410 . t c 2 q30 DP=4220;AC=16;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 5411 . c a 23 q30 DP=4266;AC=28;AF=0.0066 SIVmac239M5SpXplasmid_reference_1269-10407 5418 . a c 18 q30 DP=5038;AC=30;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 5420 . a c 2 q30 DP=5020;AC=19;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 5422 . c a 6 q30 DP=4809;AC=22;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 5423 . g t 4 q30 DP=4834;AC=20;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 5425 . c a 16 q30 DP=4876;AC=28;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 5426 . c a 2 q30 DP=6106;AC=22;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 5427 . t g 5 q30 DP=6130;AC=26;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 5428 . c a 1 q30 DP=6537;AC=22;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 5432 . a c 8 q30 DP=6609;AC=31;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 5433 . a c 4 q30 DP=6594;AC=27;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 5436 . a c 3 q30 DP=6402;AC=25;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 5448 . a c 2 q30 DP=8942;AC=33;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 5451 . c a 8 q30 DP=9335;AC=42;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 5468 . g t 10 q30 DP=10902;AC=51;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 5469 . c a 7 q30 DP=10928;AC=48;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 5472 . c a 3 q30 DP=11464;AC=44;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 5473 . c a 4 q30 DP=11476;AC=47;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 5475 . t g 1 q30 DP=11462;AC=39;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 5476 . t g 18 q30 DP=11502;AC=59;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 5477 . g t 8 q30 DP=11528;AC=51;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 5478 . c a 4 q30 DP=11530;AC=46;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 5479 . c a 1 q30 DP=11501;AC=41;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 5480 . a c 1 q30 DP=11477;AC=41;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 5483 . t g 5 q30 DP=11681;AC=49;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 5484 . t g 6 q30 DP=11837;AC=50;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 5490 . t g 22 q30 DP=11810;AC=63;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 5491 . c a 3 q30 DP=11838;AC=46;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 5492 . t g 40 PASS DP=11889;AC=73;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 5493 . t g 5 q30 DP=11920;AC=50;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 5499 . a c 1 q30 DP=11970;AC=41;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 5500 . g t 4 q30 DP=12164;AC=49;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 5502 . c a 6 q30 DP=12232;AC=52;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 5503 . t g 12 q30 DP=12202;AC=58;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 5505 . g t 14 q30 DP=12391;AC=60;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 5506 . g t 35 PASS DP=12824;AC=75;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 5507 . g a 5 q30 DP=12917;AC=54;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 5507 . g t 5 q30 DP=12917;AC=53;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 5521 . c a 5 q30 DP=13951;AC=57;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 5531 . a c 4 q30 DP=13646;AC=55;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 5533 . a c 5 q30 DP=13737;AC=57;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 5535 . a c 1 q30 DP=13841;AC=50;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 5543 . c a 2 q30 DP=13848;AC=52;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 5544 . t a 46 PASS DP=13806;AC=85;AF=0.0062 SIVmac239M5SpXplasmid_reference_1269-10407 5544 . t g 100 PASS DP=13806;AC=147;AF=0.0106 SIVmac239M5SpXplasmid_reference_1269-10407 5545 . c a 30 PASS DP=13818;AC=77;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 5569 . t g 1 q30 DP=14616;AC=51;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 5571 . t g 1 q30 DP=14637;AC=50;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 5583 . c a 1 q30 DP=14429;AC=51;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 5585 . a c 4 q30 DP=14436;AC=58;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 5589 . a c 9 q30 DP=14386;AC=64;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 5597 . a c 25 q30 DP=14251;AC=76;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 5600 . t a 3 q30 DP=13562;AC=52;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 5601 . c a 19 q30 DP=13597;AC=69;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 5604 . g t 9 q30 DP=13576;AC=61;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 5605 . g t 19 q30 DP=13574;AC=69;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 5606 . g t 9 q30 DP=13569;AC=61;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 5610 . c a 5 q30 DP=13111;AC=54;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 5621 . c a 4 q30 DP=12791;AC=52;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 5623 . c a 2 q30 DP=12791;AC=48;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 5624 . c a 8 q30 DP=12667;AC=56;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 5642 . c a 1 q30 DP=11561;AC=39;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 5646 . g t 4 q30 DP=11548;AC=47;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 5647 . g t 4 q30 DP=11473;AC=47;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 5649 . a c 9 q30 DP=11383;AC=52;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 5649 . a t 1 q30 DP=11383;AC=39;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 5678 . t g 20 q30 DP=10215;AC=55;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 5682 . g t 8 q30 DP=9797;AC=44;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 5683 . g t 2 q30 DP=9891;AC=37;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 5685 . g t 2 q30 DP=9427;AC=35;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 5688 . c a 21 q30 DP=9438;AC=52;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 5689 . c a 7 q30 DP=9362;AC=42;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 5689 . c t 3 q30 DP=9362;AC=36;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 5693 . t g 6 q30 DP=9396;AC=41;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 5695 . g t 1 q30 DP=9172;AC=33;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 5696 . g t 4 q30 DP=9182;AC=38;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 5698 . g t 2 q30 DP=9195;AC=35;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 5699 . g t 31 PASS DP=9203;AC=56;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 5700 . a c 1 q30 DP=8954;AC=30;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 5701 . a c 1 q30 DP=8978;AC=32;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 5703 . g t 3 q30 DP=9112;AC=35;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 5712 . c a 1 q30 DP=9157;AC=32;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 5713 . c a 3 q30 DP=8940;AC=35;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 5714 . c a 21 q30 DP=8978;AC=50;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 5715 . c a 2 q30 DP=8980;AC=33;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 5718 . t g 4 q30 DP=9289;AC=38;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 5719 . t g 24 q30 DP=9293;AC=53;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 5720 . t g 8 q30 DP=9297;AC=42;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 5722 . g t 10 q30 DP=9384;AC=44;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 5724 . g t 2 q30 DP=9380;AC=35;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 5728 . c a 1 q30 DP=9869;AC=35;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 5729 . c a 1 q30 DP=10002;AC=35;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 5731 . a c 2 q30 DP=10041;AC=38;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 5732 . g t 1 q30 DP=10367;AC=37;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 5734 . a c 26 q30 DP=10387;AC=59;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 5737 . g t 5 q30 DP=10366;AC=44;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 5738 . g t 42 PASS DP=10343;AC=66;AF=0.0064 SIVmac239M5SpXplasmid_reference_1269-10407 5739 . g t 2 q30 DP=10430;AC=38;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 5740 . a c 17 q30 DP=10416;AC=54;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 5744 . t g 11 q30 DP=10348;AC=49;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 5745 . t g 3 q30 DP=10349;AC=41;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 5746 . g t 66 PASS DP=10308;AC=75;AF=0.0073 SIVmac239M5SpXplasmid_reference_1269-10407 5747 . g t 32 PASS DP=10374;AC=62;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 5748 . g t 11 q30 DP=10378;AC=49;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 5749 . g t 7 q30 DP=10539;AC=46;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 5750 . a c 2 q30 DP=10511;AC=40;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 5756 . t g 7 q30 DP=10842;AC=48;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 5757 . c a 1 q30 DP=10855;AC=37;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 5760 . t g 2 q30 DP=10827;AC=41;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 5761 . g t 33 PASS DP=10934;AC=65;AF=0.0059 SIVmac239M5SpXplasmid_reference_1269-10407 5762 . c a 4 q30 DP=10934;AC=44;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 5763 . c a 4 q30 DP=11038;AC=45;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 5766 . c a 2 q30 DP=11268;AC=41;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 5767 . c a 1 q30 DP=11278;AC=41;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 5770 . a c 16 q30 DP=11746;AC=59;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 5772 . a c 1 q30 DP=11662;AC=40;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 5778 . g t 6 q30 DP=11634;AC=50;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 5783 . t g 2 q30 DP=12568;AC=48;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 5785 . c a 11 q30 DP=12518;AC=58;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 5792 . g t 9 q30 DP=12135;AC=55;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 5794 . c a 24 q30 DP=12441;AC=67;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 5795 . c a 100 PASS DP=12537;AC=107;AF=0.0085 SIVmac239M5SpXplasmid_reference_1269-10407 5796 . c a 26 q30 DP=12511;AC=69;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 5800 . a c 1 q30 DP=12922;AC=47;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 5804 . t g 2 q30 DP=12816;AC=48;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 5806 . c a 1 q30 DP=12896;AC=47;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 5808 . g t 2 q30 DP=12858;AC=49;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 5809 . a c 9 q30 DP=12689;AC=57;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 5811 . a c 1 q30 DP=12638;AC=43;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 5813 . c a 4 q30 DP=12804;AC=51;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 5814 . t g 8 q30 DP=12749;AC=56;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 5817 . g t 18 q30 DP=12717;AC=65;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 5821 . c a 8 q30 DP=12772;AC=57;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 5822 . c a 6 q30 DP=12808;AC=55;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 5824 . g t 2 q30 DP=12872;AC=49;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 5826 . a c 8 q30 DP=13810;AC=61;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 5826 . a t 5 q30 DP=13810;AC=57;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 5827 . a c 1 q30 DP=13927;AC=49;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 5833 . c a 3 q30 DP=14180;AC=55;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 5837 . c a 10 q30 DP=13868;AC=63;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 5838 . a c 2 q30 DP=13849;AC=52;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 5839 . c a 1 q30 DP=13877;AC=49;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 5844 . c a 2 q30 DP=13795;AC=52;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 5846 . g t 12 q30 DP=13967;AC=65;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 5847 . g t 1 q30 DP=14177;AC=50;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 5848 . c a 6 q30 DP=14184;AC=60;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 5855 . g t 11 q30 DP=13927;AC=64;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 5856 . g t 2 q30 DP=13792;AC=52;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 5864 . g t 2 q30 DP=13680;AC=52;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 5868 . c a 1 q30 DP=13814;AC=48;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 5870 . c a 9 q30 DP=14026;AC=63;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 5872 . t g 1 q30 DP=14003;AC=50;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 5874 . g t 2 q30 DP=13930;AC=53;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 5878 . c a 3 q30 DP=13864;AC=53;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 5879 . c a 37 PASS DP=13708;AC=80;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 5880 . t g 2 q30 DP=13668;AC=50;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 5881 . c a 9 q30 DP=14327;AC=64;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 5884 . t g 3 q30 DP=14513;AC=56;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 5889 . c a 18 q30 DP=14361;AC=72;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 5890 . c a 8 q30 DP=14050;AC=62;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 5891 . t g 1 q30 DP=13961;AC=48;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 5901 . t g 1 q30 DP=14586;AC=52;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 5905 . c a 8 q30 DP=14047;AC=62;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 5906 . c a 72 PASS DP=14038;AC=97;AF=0.0069 SIVmac239M5SpXplasmid_reference_1269-10407 5907 . c a 48 PASS DP=14477;AC=89;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 5910 . t g 2 q30 DP=14663;AC=56;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 5911 . t g 3 q30 DP=14670;AC=57;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 5928 . t a 2 q30 DP=14327;AC=54;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 5930 . c a 21 q30 DP=14598;AC=75;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 5939 . t a 1 q30 DP=14373;AC=49;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 5948 . t a 1 q30 DP=14694;AC=52;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 5948 . t g 5 q30 DP=14694;AC=60;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 5952 . t a 5 q30 DP=14648;AC=60;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 5953 . g t 6 q30 DP=14575;AC=61;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 5954 . g a 3 q30 DP=14469;AC=57;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 5954 . g t 2 q30 DP=14469;AC=54;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 5955 . g a 6 q30 DP=14271;AC=60;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 5955 . g t 32 PASS DP=14271;AC=80;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 5958 . t a 2 q30 DP=14428;AC=53;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 5958 . t g 1 q30 DP=14428;AC=52;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 5967 . t a 8 q30 DP=14265;AC=63;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 5967 . t g 9 q30 DP=14265;AC=64;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 5968 . c a 5 q30 DP=14233;AC=58;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 5971 . t g 5 q30 DP=14236;AC=59;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 5977 . c a 3 q30 DP=14149;AC=55;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 5985 . t a 22 q30 DP=13583;AC=71;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 5985 . t g 20 q30 DP=13583;AC=70;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 5986 . c a 4 q30 DP=13504;AC=55;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 5989 . c a 2 q30 DP=13555;AC=50;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 5994 . t a 15 q30 DP=13501;AC=66;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 5994 . t g 31 PASS DP=13501;AC=76;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 5995 . c a 6 q30 DP=13364;AC=57;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 5998 . c a 1 q30 DP=13304;AC=46;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 5999 . g t 18 q30 DP=13313;AC=67;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 6001 . c a 21 q30 DP=13246;AC=69;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 6004 . c a 5 q30 DP=12960;AC=54;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 6006 . t a 2 q30 DP=12923;AC=48;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 6006 . t g 36 PASS DP=12923;AC=76;AF=0.0059 SIVmac239M5SpXplasmid_reference_1269-10407 6007 . c a 20 q30 DP=12910;AC=67;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 6010 . c a 42 PASS DP=12974;AC=79;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 6016 . t g 5 q30 DP=13149;AC=54;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 6018 . g t 5 q30 DP=13123;AC=55;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 6022 . t g 3 q30 DP=12864;AC=50;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 6023 . g t 8 q30 DP=12759;AC=57;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 6025 . t a 11 q30 DP=13168;AC=61;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 6025 . t g 40 PASS DP=13168;AC=79;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 6026 . c a 65 PASS DP=13202;AC=90;AF=0.0068 SIVmac239M5SpXplasmid_reference_1269-10407 6027 . c a 44 PASS DP=13207;AC=81;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 6031 . a c 1 q30 DP=13297;AC=48;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 6032 . g a 4 q30 DP=13335;AC=54;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 6034 . c a 14 q30 DP=12491;AC=61;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 6038 . t g 2 q30 DP=12923;AC=49;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 6039 . t a 7 q30 DP=12912;AC=56;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 6039 . t g 3 q30 DP=12912;AC=50;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 6040 . c a 100 PASS DP=12919;AC=107;AF=0.0083 SIVmac239M5SpXplasmid_reference_1269-10407 6041 . t a 4 q30 DP=12796;AC=52;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 6041 . t g 4 q30 DP=12796;AC=51;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 6043 . g t 1 q30 DP=13080;AC=46;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 6048 . g t 1 q30 DP=12272;AC=44;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 6049 . c a 19 q30 DP=12210;AC=63;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 6050 . c a 100 PASS DP=12103;AC=116;AF=0.0096 SIVmac239M5SpXplasmid_reference_1269-10407 6050 . c t 1 q30 DP=12103;AC=43;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 6051 . c a 36 PASS DP=12043;AC=72;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 6053 . g a 3 q30 DP=11955;AC=47;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 6053 . g t 3 q30 DP=11955;AC=46;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 6054 . g t 2 q30 DP=12109;AC=46;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 6056 . t a 92 PASS DP=12207;AC=94;AF=0.0077 SIVmac239M5SpXplasmid_reference_1269-10407 6056 . t g 10 q30 DP=12207;AC=56;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 6057 . c a 100 PASS DP=11683;AC=113;AF=0.0097 SIVmac239M5SpXplasmid_reference_1269-10407 6060 . t a 5 q30 DP=11753;AC=49;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 6060 . t g 1 q30 DP=11753;AC=41;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 6062 . c a 29 q30 DP=11727;AC=67;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 6064 . c a 34 PASS DP=11627;AC=69;AF=0.0059 SIVmac239M5SpXplasmid_reference_1269-10407 6068 . c a 28 q30 DP=12757;AC=71;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 6069 . t a 11 q30 DP=12816;AC=60;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 6069 . t g 100 PASS DP=12816;AC=102;AF=0.0080 SIVmac239M5SpXplasmid_reference_1269-10407 6070 . t g 4 q30 DP=12775;AC=52;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 6072 . g a 1 q30 DP=13121;AC=45;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 6072 . g t 1 q30 DP=13121;AC=46;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 6075 . c a 44 PASS DP=12922;AC=80;AF=0.0062 SIVmac239M5SpXplasmid_reference_1269-10407 6081 . c a 27 q30 DP=12871;AC=71;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 6085 . t a 43 PASS DP=13248;AC=81;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 6085 . t g 1 q30 DP=13248;AC=45;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 6088 . t a 3 q30 DP=13368;AC=52;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 6088 . t g 4 q30 DP=13368;AC=54;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 6092 . c a 10 q30 DP=13772;AC=63;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 6093 . t g 1 q30 DP=13540;AC=47;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 6095 . t g 1 q30 DP=13618;AC=49;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 6099 . t a 3 q30 DP=13840;AC=53;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 6099 . t g 33 PASS DP=13840;AC=79;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 6100 . t a 3 q30 DP=13663;AC=53;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 6100 . t g 5 q30 DP=13663;AC=56;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 6101 . c a 100 PASS DP=13849;AC=120;AF=0.0087 SIVmac239M5SpXplasmid_reference_1269-10407 6106 . t g 1 q30 DP=14219;AC=50;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 6107 . g t 3 q30 DP=14015;AC=55;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 6109 . c a 18 q30 DP=14001;AC=70;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 6111 . g t 2 q30 DP=14114;AC=52;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 6112 . g a 10 q30 DP=13980;AC=64;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 6112 . g t 18 q30 DP=13980;AC=70;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 6122 . a g 3 q30 DP=13558;AC=53;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 6125 . c a 30 PASS DP=13641;AC=76;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 6138 . t g 1 q30 DP=13717;AC=50;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 6140 . c a 15 q30 DP=13795;AC=67;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 6141 . c a 18 q30 DP=13775;AC=69;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 6143 . g a 1 q30 DP=13844;AC=50;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 6146 . a t 2 q30 DP=13688;AC=51;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 6147 . a t 1 q30 DP=14416;AC=51;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 6149 . t a 5 q30 DP=14430;AC=60;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 6149 . t g 34 PASS DP=14430;AC=82;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 6150 . t g 38 PASS DP=14418;AC=84;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 6151 . g t 3 q30 DP=14422;AC=57;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 6156 . t g 6 q30 DP=13866;AC=59;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 6157 . c a 8 q30 DP=14189;AC=62;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 6164 . t a 1 q30 DP=14614;AC=50;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 6164 . t g 10 q30 DP=14614;AC=66;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 6165 . t g 49 PASS DP=14590;AC=90;AF=0.0062 SIVmac239M5SpXplasmid_reference_1269-10407 6167 . g t 4 q30 DP=14326;AC=57;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 6177 . c a 2 q30 DP=14633;AC=54;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 6180 . g t 2 q30 DP=14691;AC=56;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 6181 . g a 1 q30 DP=14782;AC=52;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 6181 . g t 8 q30 DP=14782;AC=65;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 6182 . g t 2 q30 DP=15309;AC=56;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 6215 . g t 2 q30 DP=14753;AC=54;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 6219 . c a 11 q30 DP=14813;AC=68;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 6240 . c a 28 q30 DP=14072;AC=77;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 6245 . g t 2 q30 DP=13889;AC=53;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 6252 . g t 1 q30 DP=13678;AC=49;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 6265 . g t 7 q30 DP=13975;AC=60;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 6266 . g t 42 PASS DP=13343;AC=81;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 6267 . g t 6 q30 DP=13023;AC=55;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 6279 . t g 2 q30 DP=13942;AC=51;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 6280 . t g 16 q30 DP=12724;AC=63;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 6283 . g t 4 q30 DP=12721;AC=51;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 6284 . g t 2 q30 DP=12778;AC=47;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 6287 . t g 2 q30 DP=12337;AC=45;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 6291 . g t 16 q30 DP=12212;AC=61;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 6295 . c a 6 q30 DP=12126;AC=52;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 6296 . t g 4 q30 DP=12097;AC=49;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 6300 . g t 6 q30 DP=12074;AC=52;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 6301 . g t 9 q30 DP=12088;AC=55;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 6308 . t g 1 q30 DP=11354;AC=39;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 6309 . t g 1 q30 DP=11337;AC=41;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 6320 . t g 8 q30 DP=11203;AC=50;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 6324 . g t 8 q30 DP=11236;AC=50;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 6328 . c a 1 q30 DP=11310;AC=39;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 6330 . c a 5 q30 DP=11342;AC=47;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 6335 . t g 2 q30 DP=11587;AC=43;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 6336 . t g 1 q30 DP=11443;AC=39;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 6339 . g t 1 q30 DP=11033;AC=39;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 6340 . g t 1 q30 DP=11021;AC=38;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 6341 . c a 1 q30 DP=10963;AC=38;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 6342 . t g 4 q30 DP=10811;AC=44;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 6343 . t g 8 q30 DP=10610;AC=48;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 6344 . t g 1 q30 DP=10591;AC=37;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 6348 . c a 1 q30 DP=10522;AC=37;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 6352 . a c 3 q30 DP=10378;AC=41;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 6353 . a c 3 q30 DP=10387;AC=41;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 6366 . g t 1 q30 DP=9409;AC=32;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 6368 . g t 3 q30 DP=9367;AC=36;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 6371 . c a 5 q30 DP=9333;AC=39;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 6373 . c a 6 q30 DP=9331;AC=40;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 6374 . t g 4 q30 DP=9286;AC=38;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 6375 . t g 4 q30 DP=9277;AC=38;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 6380 . c a 5 q30 DP=9128;AC=39;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 6397 . c a 1 q30 DP=8331;AC=30;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 6406 . c a 2 q30 DP=8201;AC=31;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 6413 . g t 3 q30 DP=7655;AC=30;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 6417 . g t 1 q30 DP=7498;AC=25;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 6462 . c a 6 q30 DP=5068;AC=23;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 6463 . a c 1 q30 DP=5053;AC=18;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 6488 . t c 2 q30;ac5 DP=1141;AC=4;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 6490 . g t 1 q30;ac5 DP=872;AC=3;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 6491 . t a 4 q30;ac5 DP=815;AC=4;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 6491 . t g 2 q30;ac5 DP=815;AC=3;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 6492 . t c 1 q30;ac5 DP=762;AC=2;AF=0.0026 SIVmac239M5SpXplasmid_reference_1269-10407 6492 . t g 1 q30;ac5 DP=762;AC=2;AF=0.0026 SIVmac239M5SpXplasmid_reference_1269-10407 6493 . t a 1 q30;ac5 DP=736;AC=2;AF=0.0027 SIVmac239M5SpXplasmid_reference_1269-10407 6496 . a c 1 q30;ac5 DP=736;AC=2;AF=0.0027 SIVmac239M5SpXplasmid_reference_1269-10407 6497 . t g 11 q30 DP=745;AC=6;AF=0.0081 SIVmac239M5SpXplasmid_reference_1269-10407 6500 . g t 2 q30;ac5 DP=1018;AC=4;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 6503 . t a 1 q30;ac5 DP=1178;AC=4;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 6508 . a c 1 q30;ac5 DP=1385;AC=4;AF=0.0029 SIVmac239M5SpXplasmid_reference_1269-10407 6509 . t a 1 q30;ac5 DP=1354;AC=4;AF=0.0030 SIVmac239M5SpXplasmid_reference_1269-10407 6509 . t g 1 q30;ac5 DP=1354;AC=4;AF=0.0030 SIVmac239M5SpXplasmid_reference_1269-10407 6511 . t c 1 q30;ac5 DP=1436;AC=4;AF=0.0028 SIVmac239M5SpXplasmid_reference_1269-10407 6511 . t g 1 q30 DP=1436;AC=5;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 6517 . t a 1 q30 DP=1617;AC=5;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 6517 . t g 1 q30 DP=1617;AC=5;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 6518 . g t 1 q30 DP=1747;AC=6;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 6526 . g t 2 q30 DP=2234;AC=8;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 6529 . g t 1 q30 DP=2274;AC=8;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 6530 . a g 2 q30 DP=2268;AC=8;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 6531 . c a 4 q30 DP=2303;AC=10;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 6531 . c t 1 q30 DP=2303;AC=8;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 6532 . c t 5 q30 DP=2292;AC=11;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 6535 . g t 2 q30 DP=2396;AC=9;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 6542 . g t 1 q30 DP=2636;AC=8;AF=0.0030 SIVmac239M5SpXplasmid_reference_1269-10407 6549 . t a 1 q30 DP=2937;AC=9;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 6550 . t g 4 q30 DP=2944;AC=13;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 6555 . g t 1 q30 DP=3002;AC=10;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 6556 . t a 3 q30 DP=3004;AC=12;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 6557 . c a 2 q30 DP=3009;AC=11;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 6562 . t g 1 q30 DP=3366;AC=11;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 6563 . t g 1 q30 DP=3364;AC=11;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 6567 . t a 2 q30 DP=3416;AC=13;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 6570 . g t 2 q30 DP=3387;AC=13;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 6572 . a t 1 q30 DP=3399;AC=11;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 6575 . g t 1 q30 DP=3401;AC=11;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 6579 . t g 11 q30 DP=3454;AC=19;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 6582 . c a 1 q30 DP=3468;AC=11;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 6586 . c a 5 q30 DP=3621;AC=16;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 6591 . c a 4 q30 DP=3721;AC=16;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 6592 . c a 1 q30 DP=3709;AC=13;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 6595 . t g 7 q30 DP=3999;AC=19;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 6596 . c a 29 q30 DP=4027;AC=29;AF=0.0072 SIVmac239M5SpXplasmid_reference_1269-10407 6599 . t a 1 q30 DP=4103;AC=13;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 6600 . g t 1 q30 DP=4106;AC=13;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 6602 . t g 8 q30 DP=4087;AC=20;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 6605 . g a 1 q30 DP=3999;AC=14;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 6606 . c a 26 q30 DP=3998;AC=28;AF=0.0070 SIVmac239M5SpXplasmid_reference_1269-10407 6607 . c a 50 PASS DP=3984;AC=35;AF=0.0088 SIVmac239M5SpXplasmid_reference_1269-10407 6610 . a c 1 q30 DP=4006;AC=14;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 6612 . c a 2 q30 DP=4014;AC=15;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 6618 . t g 1 q30 DP=4010;AC=14;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 6619 . g t 8 q30 DP=4036;AC=20;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 6621 . t a 1 q30 DP=4393;AC=14;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 6623 . t c 3 q30 DP=4384;AC=18;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 6623 . t g 7 q30 DP=4384;AC=21;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 6627 . t a 4 q30 DP=4565;AC=19;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 6627 . t g 3 q30 DP=4565;AC=18;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 6628 . t c 1 q30 DP=4560;AC=16;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 6628 . t g 1 q30 DP=4560;AC=15;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 6637 . a c 1 q30 DP=5101;AC=17;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 6647 . t g 5 q30 DP=5478;AC=24;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 6658 . a c 1 q30 DP=6424;AC=22;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 6661 . t g 4 q30 DP=6536;AC=27;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 6665 . g t 5 q30 DP=6848;AC=29;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 6666 . c a 1 q30 DP=6839;AC=24;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 6670 . c a 30 PASS DP=7042;AC=45;AF=0.0064 SIVmac239M5SpXplasmid_reference_1269-10407 6671 . c a 7 q30 DP=7038;AC=32;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 6683 . t g 41 PASS DP=8227;AC=55;AF=0.0067 SIVmac239M5SpXplasmid_reference_1269-10407 6684 . c a 2 q30 DP=8315;AC=31;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 6685 . c a 25 q30 DP=8338;AC=49;AF=0.0059 SIVmac239M5SpXplasmid_reference_1269-10407 6686 . c a 5 q30 DP=8563;AC=36;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 6690 . t g 10 q30 DP=9359;AC=44;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 6692 . t g 4 q30 DP=9596;AC=39;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 6697 . g t 1 q30 DP=9984;AC=36;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 6707 . t g 6 q30 DP=11234;AC=48;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 6718 . t g 9 q30 DP=10871;AC=50;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 6722 . t g 71 PASS DP=10878;AC=80;AF=0.0074 SIVmac239M5SpXplasmid_reference_1269-10407 6723 . t g 33 PASS DP=10900;AC=65;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 6724 . t g 3 q30 DP=10893;AC=43;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 6730 . c a 4 q30 DP=11048;AC=45;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 6731 . t c 1 q30 DP=11182;AC=38;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 6731 . t g 7 q30 DP=11182;AC=49;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 6732 . c a 16 q30 DP=11241;AC=57;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 6733 . c a 4 q30 DP=11274;AC=45;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 6747 . c a 23 q30 DP=11435;AC=62;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 6748 . c a 4 q30 DP=11411;AC=46;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 6749 . g t 4 q30 DP=11431;AC=46;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 6750 . g t 5 q30 DP=11573;AC=48;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 6757 . c a 8 q30 DP=12014;AC=53;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 6758 . c a 14 q30 DP=12046;AC=59;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 6759 . t a 1 q30 DP=11952;AC=41;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 6759 . t g 11 q30 DP=11952;AC=56;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 6766 . g t 20 q30 DP=12028;AC=63;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 6773 . t g 5 q30 DP=12498;AC=52;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 6780 . g t 2 q30 DP=13142;AC=48;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 6787 . t a 11 q30 DP=14177;AC=65;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 6788 . c a 6 q30 DP=14371;AC=60;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 6789 . c a 4 q30 DP=14338;AC=57;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 6790 . t g 1 q30 DP=14306;AC=49;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 6791 . c a 1 q30 DP=14574;AC=52;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 6800 . a c 2 q30 DP=14298;AC=54;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 6806 . t g 21 q30 DP=14121;AC=73;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 6808 . g t 3 q30 DP=14182;AC=56;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 6813 . c a 3 q30 DP=14366;AC=55;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 6816 . a c 3 q30 DP=14481;AC=56;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 6817 . a c 4 q30 DP=14429;AC=58;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 6820 . g t 16 q30 DP=14558;AC=71;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 6845 . c a 1 q30 DP=14392;AC=50;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 6846 . c a 13 q30 DP=14369;AC=68;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 6852 . c a 4 q30 DP=13910;AC=56;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 6853 . c a 29 q30 DP=13928;AC=77;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 6881 . g t 5 q30 DP=12274;AC=51;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 6882 . c a 2 q30 DP=12291;AC=47;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 6883 . c a 18 q30 DP=12101;AC=62;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 6901 . t g 1 q30 DP=10265;AC=35;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 6904 . t g 5 q30 DP=10343;AC=43;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 6905 . c a 6 q30 DP=10342;AC=45;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 6911 . t a 2 q30 DP=9542;AC=36;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 6911 . t g 100 PASS DP=9542;AC=93;AF=0.0097 SIVmac239M5SpXplasmid_reference_1269-10407 6912 . t g 20 q30 DP=9540;AC=52;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 6913 . g t 11 q30 DP=9674;AC=46;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 6924 . g t 1 q30 DP=9180;AC=31;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 6930 . a c 3 q30 DP=9127;AC=35;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 6934 . t g 4 q30 DP=9164;AC=38;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 6935 . t g 1 q30 DP=9153;AC=33;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 6936 . t g 1 q30 DP=9151;AC=32;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 6938 . t g 14 q30 DP=9147;AC=46;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 6941 . g t 5 q30 DP=9112;AC=38;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 6942 . c a 24 q30 DP=9128;AC=52;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 6943 . c a 21 q30 DP=9233;AC=51;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 6944 . t a 1 q30 DP=9220;AC=32;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 6944 . t g 2 q30 DP=9220;AC=34;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 6945 . c a 1 q30 DP=9221;AC=33;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 6946 . c a 1 q30 DP=9241;AC=33;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 6949 . g t 4 q30 DP=9393;AC=38;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 6953 . g t 40 PASS DP=8881;AC=58;AF=0.0065 SIVmac239M5SpXplasmid_reference_1269-10407 6954 . g t 25 q30 DP=8846;AC=51;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 6955 . g t 29 q30 DP=8801;AC=53;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 6957 . g t 11 q30 DP=8665;AC=42;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 6959 . c a 14 q30 DP=8649;AC=44;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 6960 . c a 12 q30 DP=8558;AC=42;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 6961 . t g 7 q30 DP=8517;AC=38;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 6962 . c a 15 q30 DP=8513;AC=44;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 6971 . c a 1 q30 DP=9017;AC=32;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 6972 . t a 4 q30 DP=8986;AC=36;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 6972 . t g 25 q30 DP=8986;AC=52;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 6973 . c a 32 PASS DP=8953;AC=55;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 6974 . c a 38 PASS DP=8795;AC=57;AF=0.0065 SIVmac239M5SpXplasmid_reference_1269-10407 6976 . c a 3 q30 DP=8830;AC=34;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 6979 . t a 1 q30 DP=8517;AC=30;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 6980 . g t 3 q30 DP=8591;AC=34;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 6982 . c a 10 q30 DP=8565;AC=41;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 6983 . c a 18 q30 DP=8512;AC=46;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 6985 . g t 4 q30 DP=8899;AC=36;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 6987 . c a 2 q30 DP=8899;AC=34;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 6988 . t g 2 q30 DP=8852;AC=33;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 7000 . t g 7 q30 DP=8700;AC=39;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 7003 . a c 3 q30 DP=8659;AC=34;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 7004 . t a 1 q30 DP=8654;AC=31;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 7004 . t g 19 q30 DP=8654;AC=47;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 7006 . g t 2 q30 DP=8532;AC=31;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 7009 . t a 1 q30 DP=8485;AC=29;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 7014 . g t 3 q30 DP=8396;AC=33;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 7015 . g t 6 q30 DP=8321;AC=36;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 7019 . c a 5 q30 DP=8392;AC=35;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 7020 . c a 7 q30 DP=8272;AC=37;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 7022 . a c 3 q30 DP=8257;AC=33;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 7024 . c a 2 q30 DP=8320;AC=31;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 7025 . t g 1 q30 DP=8235;AC=28;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 7030 . t g 2 q30 DP=8136;AC=31;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 7031 . c a 7 q30 DP=8144;AC=37;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 7033 . c a 1 q30 DP=7973;AC=28;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 7034 . c a 14 q30 DP=7908;AC=41;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 7036 . t g 2 q30 DP=7775;AC=29;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 7037 . g t 1 q30 DP=7815;AC=27;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 7041 . g t 1 q30 DP=7547;AC=26;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 7045 . a c 2 q30 DP=7376;AC=28;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 7046 . g t 12 q30 DP=7375;AC=37;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 7049 . g t 2 q30 DP=7131;AC=26;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 7051 . c a 35 PASS DP=7118;AC=47;AF=0.0066 SIVmac239M5SpXplasmid_reference_1269-10407 7054 . a c 2 q30 DP=7185;AC=26;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 7061 . t a 3 q30 DP=7067;AC=28;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 7064 . a c 5 q30 DP=6634;AC=28;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 7065 . t a 1 q30 DP=6625;AC=23;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 7065 . t g 4 q30 DP=6625;AC=27;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 7067 . g t 1 q30 DP=6550;AC=23;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 7068 . g t 1 q30 DP=6631;AC=22;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 7071 . t g 2 q30 DP=6619;AC=25;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 7073 . g t 2 q30 DP=6490;AC=24;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 7074 . g a 2 q30 DP=6546;AC=25;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 7076 . a c 10 q30 DP=6488;AC=32;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 7076 . a t 1 q30 DP=6488;AC=22;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 7079 . t g 1 q30 DP=6472;AC=23;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 7080 . t g 4 q30 DP=6467;AC=27;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 7084 . a c 2 q30 DP=6515;AC=24;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 7086 . t g 2 q30 DP=6380;AC=23;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 7087 . t g 1 q30 DP=6331;AC=21;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 7090 . t g 3 q30 DP=6133;AC=24;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 7092 . g t 4 q30 DP=6111;AC=25;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 7094 . g t 1 q30 DP=5682;AC=19;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 7095 . a g 1 q30 DP=5615;AC=19;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 7096 . t g 1 q30 DP=5597;AC=18;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 7097 . c a 18 q30 DP=5521;AC=32;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 7099 . c a 3 q30 DP=5326;AC=21;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 7100 . t g 9 q30 DP=5311;AC=26;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 7101 . c a 17 q30 DP=5346;AC=31;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 7102 . c a 16 q30 DP=5270;AC=30;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 7105 . t g 10 q30 DP=5161;AC=26;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 7106 . t g 5 q30 DP=5112;AC=22;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 7107 . g t 4 q30 DP=5094;AC=21;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 7108 . g t 1 q30 DP=4946;AC=17;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 7111 . t g 1 q30 DP=4765;AC=17;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 7112 . g t 21 q30 DP=4805;AC=30;AF=0.0062 SIVmac239M5SpXplasmid_reference_1269-10407 7113 . g t 6 q30 DP=4830;AC=22;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 7114 . c a 5 q30 DP=4802;AC=21;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 7115 . c a 40 PASS DP=4835;AC=37;AF=0.0077 SIVmac239M5SpXplasmid_reference_1269-10407 7115 . c t 3 q30 DP=4835;AC=19;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 7116 . c a 75 PASS DP=4776;AC=46;AF=0.0096 SIVmac239M5SpXplasmid_reference_1269-10407 7116 . c t 4 q30 DP=4776;AC=20;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 7117 . c a 54 PASS DP=4813;AC=41;AF=0.0085 SIVmac239M5SpXplasmid_reference_1269-10407 7118 . c a 100 PASS DP=4820;AC=55;AF=0.0114 SIVmac239M5SpXplasmid_reference_1269-10407 7120 . c a 1 q30 DP=4842;AC=16;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 7123 . a c 2 q30 DP=4881;AC=18;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 7123 . a t 1 q30 DP=4881;AC=16;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 7127 . g t 5 q30 DP=4827;AC=21;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 7129 . a t 1 q30 DP=4794;AC=17;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 7131 . a g 6 q30 DP=4624;AC=21;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 7131 . a t 5 q30 DP=4624;AC=20;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 7132 . g t 37 PASS DP=4653;AC=35;AF=0.0075 SIVmac239M5SpXplasmid_reference_1269-10407 7133 . g t 12 q30 DP=4811;AC=26;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 7136 . c a 2 q30 DP=4824;AC=18;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 7137 . a g 3 q30 DP=4772;AC=19;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 7139 . t g 1 q30 DP=4843;AC=16;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 7141 . c a 1 q30 DP=4859;AC=17;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 7143 . g t 22 q30 DP=4527;AC=29;AF=0.0064 SIVmac239M5SpXplasmid_reference_1269-10407 7144 . g t 6 q30 DP=4501;AC=21;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 7146 . g t 20 q30 DP=4465;AC=28;AF=0.0063 SIVmac239M5SpXplasmid_reference_1269-10407 7147 . g t 2 q30 DP=4307;AC=16;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 7148 . c a 22 q30 DP=4306;AC=28;AF=0.0065 SIVmac239M5SpXplasmid_reference_1269-10407 7150 . c a 9 q30 DP=4277;AC=22;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 7151 . c a 28 q30 DP=4266;AC=30;AF=0.0070 SIVmac239M5SpXplasmid_reference_1269-10407 7152 . t c 8 q30 DP=4257;AC=21;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 7152 . t g 1 q30 DP=4257;AC=15;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 7153 . c a 18 q30 DP=4266;AC=26;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 7153 . c t 1 q30 DP=4266;AC=14;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 7154 . a c 2 q30 DP=4273;AC=16;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 7154 . a t 1 q30 DP=4273;AC=14;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 7155 . a c 28 q30 DP=4274;AC=30;AF=0.0070 SIVmac239M5SpXplasmid_reference_1269-10407 7157 . a c 24 q30 DP=4376;AC=29;AF=0.0066 SIVmac239M5SpXplasmid_reference_1269-10407 7157 . a t 1 q30 DP=4376;AC=14;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 7158 . a c 29 q30 DP=4383;AC=31;AF=0.0071 SIVmac239M5SpXplasmid_reference_1269-10407 7158 . a g 1 q30 DP=4383;AC=14;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 7159 . a c 21 q30 DP=4402;AC=28;AF=0.0064 SIVmac239M5SpXplasmid_reference_1269-10407 7159 . a t 2 q30 DP=4402;AC=16;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 7160 . t g 52 PASS DP=4416;AC=38;AF=0.0086 SIVmac239M5SpXplasmid_reference_1269-10407 7161 . a c 14 q30 DP=4406;AC=25;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 7162 . a c 18 q30 DP=4421;AC=27;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 7163 . a c 14 q30 DP=4415;AC=25;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 7163 . a g 2 q30 DP=4415;AC=16;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 7164 . a c 31 PASS DP=4432;AC=32;AF=0.0072 SIVmac239M5SpXplasmid_reference_1269-10407 7166 . a c 3 q30 DP=4260;AC=17;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 7166 . a g 3 q30 DP=4260;AC=17;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 7166 . a t 20 q30 DP=4260;AC=27;AF=0.0063 SIVmac239M5SpXplasmid_reference_1269-10407 7168 . g t 18 q30 DP=4214;AC=26;AF=0.0062 SIVmac239M5SpXplasmid_reference_1269-10407 7169 . g t 35 PASS DP=4226;AC=32;AF=0.0076 SIVmac239M5SpXplasmid_reference_1269-10407 7170 . g t 13 q30 DP=4258;AC=24;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 7171 . t a 10 q30 DP=4234;AC=22;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 7171 . t g 2 q30 DP=4234;AC=16;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 7172 . c a 6 q30 DP=4269;AC=20;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 7172 . c t 1 q30 DP=4269;AC=14;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 7173 . t g 44 PASS DP=4251;AC=35;AF=0.0082 SIVmac239M5SpXplasmid_reference_1269-10407 7174 . t a 1 q30 DP=4266;AC=14;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 7174 . t g 15 q30 DP=4266;AC=25;AF=0.0059 SIVmac239M5SpXplasmid_reference_1269-10407 7175 . t g 28 q30 DP=4261;AC=30;AF=0.0070 SIVmac239M5SpXplasmid_reference_1269-10407 7176 . g t 3 q30 DP=4459;AC=18;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 7177 . t g 5 q30 DP=4448;AC=20;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 7178 . g t 1 q30 DP=4448;AC=14;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 7179 . c a 2 q30 DP=4399;AC=16;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 7180 . t g 15 q30 DP=4337;AC=25;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 7181 . a c 3 q30 DP=4311;AC=17;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 7181 . a g 1 q30 DP=4311;AC=14;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 7181 . a t 4 q30 DP=4311;AC=18;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 7182 . g t 8 q30 DP=4323;AC=21;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 7183 . g t 19 q30 DP=4365;AC=27;AF=0.0062 SIVmac239M5SpXplasmid_reference_1269-10407 7184 . g t 12 q30 DP=4411;AC=24;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 7185 . t a 4 q30 DP=4211;AC=18;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 7185 . t c 4 q30 DP=4211;AC=18;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 7185 . t g 3 q30 DP=4211;AC=17;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 7186 . t a 1 q30 DP=4217;AC=14;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 7186 . t g 23 q30 DP=4217;AC=28;AF=0.0066 SIVmac239M5SpXplasmid_reference_1269-10407 7187 . c a 2 q30 DP=4217;AC=16;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 7188 . t g 14 q30 DP=4207;AC=24;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 7189 . t g 18 q30 DP=4210;AC=26;AF=0.0062 SIVmac239M5SpXplasmid_reference_1269-10407 7191 . g t 2 q30 DP=4207;AC=16;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 7192 . g t 2 q30 DP=4198;AC=16;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 7193 . t a 5 q30 DP=4129;AC=18;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 7193 . t c 5 q30 DP=4129;AC=18;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 7193 . t g 13 q30 DP=4129;AC=23;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 7194 . t g 10 q30 DP=4155;AC=22;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 7195 . t g 24 q30 DP=4151;AC=28;AF=0.0067 SIVmac239M5SpXplasmid_reference_1269-10407 7196 . t g 87 PASS DP=4169;AC=45;AF=0.0108 SIVmac239M5SpXplasmid_reference_1269-10407 7198 . t a 2 q30 DP=4162;AC=15;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 7198 . t g 17 q30 DP=4162;AC=25;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 7199 . c a 1 q30 DP=4164;AC=14;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 7201 . c a 4 q30 DP=4161;AC=18;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 7202 . a c 3 q30 DP=4155;AC=17;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 7202 . a t 1 q30 DP=4155;AC=14;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 7203 . a g 7 q30 DP=4182;AC=20;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 7205 . g t 14 q30 DP=4214;AC=24;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 7206 . g t 1 q30 DP=4205;AC=14;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 7207 . c a 2 q30 DP=4206;AC=15;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 7208 . a c 2 q30 DP=4201;AC=16;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 7208 . a t 4 q30 DP=4201;AC=18;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 7211 . t a 9 q30 DP=4332;AC=22;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 7211 . t c 33 PASS DP=4332;AC=32;AF=0.0074 SIVmac239M5SpXplasmid_reference_1269-10407 7211 . t g 22 q30 DP=4332;AC=28;AF=0.0065 SIVmac239M5SpXplasmid_reference_1269-10407 7212 . t g 9 q30 DP=4311;AC=22;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 7213 . c a 2 q30 DP=4334;AC=16;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 7214 . t g 15 q30 DP=4310;AC=25;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 7215 . g t 1 q30 DP=4373;AC=14;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 7216 . c a 3 q30 DP=4366;AC=17;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 7219 . t g 9 q30 DP=4105;AC=21;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 7220 . g a 2 q30 DP=4129;AC=15;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 7220 . g t 13 q30 DP=4129;AC=23;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 7221 . g t 11 q30 DP=4116;AC=22;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 7222 . g t 7 q30 DP=4147;AC=20;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 7223 . c a 6 q30 DP=4142;AC=19;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 7223 . c g 2 q30 DP=4142;AC=15;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 7225 . c a 3 q30 DP=4132;AC=17;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 7226 . g a 1 q30 DP=4125;AC=14;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 7226 . g t 1 q30 DP=4125;AC=14;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 7228 . c a 12 q30 DP=4138;AC=23;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 7230 . t a 3 q30 DP=4114;AC=16;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 7230 . t g 17 q30 DP=4114;AC=25;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 7231 . c a 7 q30 DP=4120;AC=20;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 7233 . t g 2 q30 DP=4127;AC=16;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 7234 . t g 47 PASS DP=4126;AC=35;AF=0.0085 SIVmac239M5SpXplasmid_reference_1269-10407 7236 . a g 1 q30 DP=4157;AC=13;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 7237 . c a 2 q30 DP=4142;AC=15;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 7239 . c a 3 q30 DP=4102;AC=16;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 7240 . t g 6 q30 DP=4063;AC=19;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 7241 . g a 1 q30 DP=4078;AC=13;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 7241 . g t 1 q30 DP=4078;AC=14;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 7242 . a c 1 q30 DP=4076;AC=14;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 7242 . a g 1 q30 DP=4076;AC=13;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 7243 . c a 9 q30 DP=4096;AC=21;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 7244 . c a 31 PASS DP=4060;AC=30;AF=0.0074 SIVmac239M5SpXplasmid_reference_1269-10407 7244 . c t 2 q30 DP=4060;AC=15;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 7245 . g t 1 q30 DP=4080;AC=13;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 7246 . c a 8 q30 DP=4088;AC=20;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 7247 . t a 3 q30 DP=4084;AC=16;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 7247 . t c 31 PASS DP=4084;AC=30;AF=0.0073 SIVmac239M5SpXplasmid_reference_1269-10407 7247 . t g 8 q30 DP=4084;AC=20;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 7248 . c a 17 q30 DP=4079;AC=25;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 7249 . a c 11 q30 DP=4041;AC=22;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 7252 . c a 10 q30 DP=4217;AC=22;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 7252 . c g 1 q30 DP=4217;AC=14;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 7253 . c a 29 q30 DP=4194;AC=30;AF=0.0072 SIVmac239M5SpXplasmid_reference_1269-10407 7253 . c t 1 q30 DP=4194;AC=14;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 7254 . c a 6 q30 DP=4162;AC=19;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 7255 . g t 2 q30 DP=4164;AC=16;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 7256 . a c 96 PASS DP=4325;AC=48;AF=0.0111 SIVmac239M5SpXplasmid_reference_1269-10407 7256 . a t 9 q30 DP=4325;AC=22;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 7257 . a c 6 q30 DP=4353;AC=20;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 7259 . t a 1 q30 DP=4323;AC=14;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 7259 . t g 43 PASS DP=4323;AC=35;AF=0.0081 SIVmac239M5SpXplasmid_reference_1269-10407 7260 . t a 2 q30 DP=4368;AC=16;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 7260 . t g 64 PASS DP=4368;AC=41;AF=0.0094 SIVmac239M5SpXplasmid_reference_1269-10407 7261 . t g 38 PASS DP=4386;AC=34;AF=0.0078 SIVmac239M5SpXplasmid_reference_1269-10407 7262 . a c 29 q30 DP=4400;AC=31;AF=0.0070 SIVmac239M5SpXplasmid_reference_1269-10407 7263 . t g 42 PASS DP=4399;AC=35;AF=0.0080 SIVmac239M5SpXplasmid_reference_1269-10407 7264 . t g 10 q30 DP=4387;AC=23;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 7267 . c a 4 q30 DP=4539;AC=19;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 7267 . c g 1 q30 DP=4539;AC=16;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 7268 . t a 5 q30 DP=4480;AC=20;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 7268 . t g 13 q30 DP=4480;AC=25;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 7269 . g t 20 q30 DP=4488;AC=28;AF=0.0062 SIVmac239M5SpXplasmid_reference_1269-10407 7270 . g a 5 q30 DP=4586;AC=20;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 7270 . g t 6 q30 DP=4586;AC=21;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 7271 . g t 5 q30 DP=4582;AC=20;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 7272 . a c 38 PASS DP=4578;AC=35;AF=0.0076 SIVmac239M5SpXplasmid_reference_1269-10407 7272 . a g 4 q30 DP=4578;AC=19;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 7272 . a t 17 q30 DP=4578;AC=27;AF=0.0059 SIVmac239M5SpXplasmid_reference_1269-10407 7273 . t a 1 q30 DP=4565;AC=16;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 7273 . t g 38 PASS DP=4565;AC=35;AF=0.0077 SIVmac239M5SpXplasmid_reference_1269-10407 7274 . a c 17 q30 DP=4336;AC=26;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 7276 . t a 1 q30 DP=4511;AC=16;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 7276 . t g 53 PASS DP=4511;AC=39;AF=0.0086 SIVmac239M5SpXplasmid_reference_1269-10407 7277 . g t 8 q30 DP=4514;AC=22;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 7278 . c a 27 q30 DP=4504;AC=31;AF=0.0069 SIVmac239M5SpXplasmid_reference_1269-10407 7279 . a g 1 q30 DP=4365;AC=14;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 7280 . g t 2 q30 DP=4398;AC=16;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 7281 . c a 3 q30 DP=4397;AC=18;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 7282 . a c 21 q30 DP=4399;AC=28;AF=0.0064 SIVmac239M5SpXplasmid_reference_1269-10407 7283 . a c 2 q30 DP=4390;AC=16;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 7285 . a c 7 q30 DP=4213;AC=20;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 7286 . g t 2 q30 DP=4258;AC=16;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 7287 . c a 8 q30 DP=4262;AC=21;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 7288 . a c 10 q30 DP=4250;AC=22;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 7290 . c a 2 q30 DP=4228;AC=16;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 7291 . a c 3 q30 DP=4235;AC=17;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 7293 . c a 3 q30 DP=4341;AC=17;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 7294 . t g 17 q30 DP=4331;AC=26;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 7296 . t a 3 q30 DP=4352;AC=17;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 7296 . t c 3 q30 DP=4352;AC=17;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 7296 . t g 65 PASS DP=4352;AC=41;AF=0.0094 SIVmac239M5SpXplasmid_reference_1269-10407 7297 . t g 1 q30 DP=4351;AC=14;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 7298 . g t 21 q30 DP=4360;AC=28;AF=0.0064 SIVmac239M5SpXplasmid_reference_1269-10407 7299 . g a 1 q30 DP=4339;AC=15;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 7299 . g t 2 q30 DP=4339;AC=16;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 7300 . a c 5 q30 DP=4339;AC=19;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 7301 . c a 44 PASS DP=4270;AC=35;AF=0.0082 SIVmac239M5SpXplasmid_reference_1269-10407 7303 . t a 1 q30 DP=4205;AC=14;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 7303 . t g 12 q30 DP=4205;AC=23;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 7304 . g a 11 q30 DP=4302;AC=23;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 7304 . g t 17 q30 DP=4302;AC=26;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 7305 . g a 1 q30 DP=4375;AC=14;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 7306 . t g 1 q30 DP=4375;AC=15;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 7307 . c a 61 PASS DP=4366;AC=40;AF=0.0092 SIVmac239M5SpXplasmid_reference_1269-10407 7308 . a c 9 q30 DP=4358;AC=22;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 7309 . a c 6 q30 DP=4390;AC=20;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 7310 . g t 3 q30 DP=4391;AC=18;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 7311 . a g 1 q30 DP=4384;AC=15;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 7312 . g a 1 q30 DP=4369;AC=15;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 7312 . g t 3 q30 DP=4369;AC=17;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 7313 . a g 4 q30 DP=4266;AC=18;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 7314 . c a 1 q30 DP=4286;AC=15;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 7315 . a g 1 q30 DP=4279;AC=15;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 7318 . a c 5 q30 DP=4297;AC=19;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 7319 . a c 3 q30 DP=4290;AC=17;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 7319 . a g 1 q30 DP=4290;AC=15;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 7320 . g t 1 q30 DP=4334;AC=14;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 7321 . a c 15 q30 DP=4317;AC=25;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 7321 . a g 6 q30 DP=4317;AC=20;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 7323 . t g 59 PASS DP=4248;AC=39;AF=0.0092 SIVmac239M5SpXplasmid_reference_1269-10407 7324 . t a 1 q30 DP=4250;AC=15;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 7324 . t g 48 PASS DP=4250;AC=36;AF=0.0085 SIVmac239M5SpXplasmid_reference_1269-10407 7326 . t g 14 q30 DP=4225;AC=24;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 7327 . t a 1 q30 DP=4218;AC=14;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 7327 . t g 21 q30 DP=4218;AC=27;AF=0.0064 SIVmac239M5SpXplasmid_reference_1269-10407 7328 . g t 4 q30 DP=4240;AC=18;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 7329 . c a 1 q30 DP=4207;AC=14;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 7330 . g t 12 q30 DP=4188;AC=23;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 7333 . t g 11 q30 DP=4096;AC=22;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 7335 . a g 3 q30 DP=4094;AC=16;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 7335 . a t 3 q30 DP=4094;AC=16;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 7336 . c a 5 q30 DP=4096;AC=18;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 7337 . c a 17 q30 DP=4084;AC=25;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 7339 . t g 45 PASS DP=4038;AC=34;AF=0.0084 SIVmac239M5SpXplasmid_reference_1269-10407 7340 . c a 26 q30 DP=4039;AC=28;AF=0.0069 SIVmac239M5SpXplasmid_reference_1269-10407 7340 . c g 1 q30 DP=4039;AC=14;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 7341 . t g 1 q30 DP=4036;AC=13;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 7342 . g t 1 q30 DP=4049;AC=13;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 7343 . g t 5 q30 DP=4040;AC=18;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 7344 . g t 12 q30 DP=4028;AC=22;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 7345 . g t 8 q30 DP=4054;AC=20;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 7346 . a c 3 q30 DP=4016;AC=16;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 7346 . a g 10 q30 DP=4016;AC=21;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 7346 . a t 1 q30 DP=4016;AC=14;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 7348 . c a 2 q30 DP=4056;AC=15;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 7349 . a c 1 q30 DP=4055;AC=13;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 7350 . a c 1 q30 DP=4051;AC=13;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 7351 . a c 5 q30 DP=4022;AC=18;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 7353 . a g 1 q30 DP=4027;AC=13;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 7354 . a g 16 q30 DP=3996;AC=24;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 7354 . a t 2 q30 DP=3996;AC=15;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 7355 . c a 5 q30 DP=4045;AC=18;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 7356 . c a 11 q30 DP=4108;AC=22;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 7357 . t a 4 q30 DP=4051;AC=17;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 7357 . t g 49 PASS DP=4051;AC=35;AF=0.0086 SIVmac239M5SpXplasmid_reference_1269-10407 7358 . c a 23 q30 DP=4070;AC=27;AF=0.0066 SIVmac239M5SpXplasmid_reference_1269-10407 7359 . c a 3 q30 DP=4055;AC=16;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 7362 . a c 3 q30 DP=4323;AC=17;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 7363 . c a 2 q30 DP=4346;AC=16;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 7363 . c t 1 q30 DP=4346;AC=15;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 7364 . t g 5 q30 DP=4295;AC=19;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 7366 . g t 3 q30 DP=4257;AC=17;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 7367 . g t 1 q30 DP=4284;AC=15;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 7368 . g a 5 q30 DP=4278;AC=19;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 7369 . t g 3 q30 DP=4225;AC=17;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 7370 . c a 19 q30 DP=4138;AC=26;AF=0.0063 SIVmac239M5SpXplasmid_reference_1269-10407 7370 . c g 1 q30 DP=4138;AC=14;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 7371 . a c 3 q30 DP=4121;AC=16;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 7371 . a g 3 q30 DP=4121;AC=16;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 7372 . c a 5 q30 DP=4120;AC=18;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 7373 . t g 17 q30 DP=4118;AC=25;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 7375 . c a 5 q30 DP=4134;AC=18;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 7376 . c a 15 q30 DP=4050;AC=24;AF=0.0059 SIVmac239M5SpXplasmid_reference_1269-10407 7378 . t a 13 q30 DP=4089;AC=23;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 7378 . t g 51 PASS DP=4089;AC=36;AF=0.0088 SIVmac239M5SpXplasmid_reference_1269-10407 7379 . c a 3 q30 DP=4095;AC=16;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 7380 . g t 4 q30 DP=4114;AC=17;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 7381 . a c 9 q30 DP=4107;AC=21;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 7383 . a c 9 q30 DP=4080;AC=21;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 7385 . g t 2 q30 DP=4137;AC=15;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 7386 . t a 1 q30 DP=4103;AC=13;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 7386 . t g 7 q30 DP=4103;AC=20;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 7387 . a c 1 q30 DP=4208;AC=15;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 7389 . t a 3 q30 DP=4231;AC=17;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 7389 . t g 2 q30 DP=4231;AC=16;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 7390 . t a 1 q30 DP=4249;AC=14;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 7390 . t g 13 q30 DP=4249;AC=24;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 7395 . g t 3 q30 DP=4206;AC=17;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 7396 . a c 1 q30 DP=4137;AC=14;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 7397 . c a 3 q30 DP=4140;AC=17;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 7398 . c a 6 q30 DP=4123;AC=19;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 7400 . g t 1 q30 DP=4133;AC=13;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 7401 . g t 3 q30 DP=4144;AC=17;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 7402 . c a 24 q30 DP=4149;AC=28;AF=0.0067 SIVmac239M5SpXplasmid_reference_1269-10407 7404 . c a 7 q30 DP=4131;AC=20;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 7405 . a c 1 q30 DP=4117;AC=13;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 7408 . t g 3 q30 DP=4180;AC=17;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 7409 . g t 9 q30 DP=4181;AC=21;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 7411 . a c 1 q30 DP=4140;AC=14;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 7412 . t a 2 q30 DP=4151;AC=16;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 7412 . t g 2 q30 DP=4151;AC=16;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 7415 . t g 7 q30 DP=4159;AC=20;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 7416 . t g 2 q30 DP=4164;AC=16;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 7417 . g t 7 q30 DP=4171;AC=20;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 7418 . g t 10 q30 DP=4181;AC=22;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 7419 . g t 2 q30 DP=4195;AC=15;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 7421 . a c 2 q30 DP=4184;AC=16;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 7422 . t g 1 q30 DP=4002;AC=14;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 7424 . t g 4 q30 DP=3984;AC=17;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 7425 . g t 2 q30 DP=4019;AC=15;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 7426 . c a 3 q30 DP=4063;AC=16;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 7428 . t g 2 q30 DP=4047;AC=15;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 7429 . t g 1 q30 DP=4074;AC=14;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 7434 . c a 13 q30 DP=4082;AC=23;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 7438 . t g 5 q30 DP=4039;AC=18;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 7439 . c a 8 q30 DP=4062;AC=20;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 7440 . t g 5 q30 DP=4042;AC=18;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 7441 . g t 2 q30 DP=4066;AC=15;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 7442 . c a 1 q30 DP=4162;AC=14;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 7445 . c a 2 q30 DP=4209;AC=16;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 7455 . c a 4 q30 DP=5049;AC=21;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 7461 . c a 3 q30 DP=4370;AC=17;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 7462 . c a 3 q30 DP=4341;AC=17;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 7465 . a c 4 q30 DP=4321;AC=18;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 7466 . t g 2 q30 DP=4572;AC=17;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 7468 . c a 4 q30 DP=4600;AC=19;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 7470 . a c 1 q30 DP=4588;AC=15;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 7472 . t g 22 q30 DP=4755;AC=30;AF=0.0063 SIVmac239M5SpXplasmid_reference_1269-10407 7473 . c a 4 q30 DP=4798;AC=20;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 7474 . t g 24 q30 DP=4793;AC=31;AF=0.0065 SIVmac239M5SpXplasmid_reference_1269-10407 7477 . c a 3 q30 DP=4922;AC=20;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 7479 . c a 13 q30 DP=4948;AC=27;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 7480 . c a 12 q30 DP=4908;AC=26;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 7482 . a c 1 q30 DP=5062;AC=18;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 7484 . g t 2 q30 DP=5156;AC=19;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 7485 . t c 1 q30 DP=5152;AC=17;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 7485 . t g 6 q30 DP=5152;AC=23;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 7486 . g t 6 q30 DP=5125;AC=23;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 7487 . g a 1 q30 DP=5159;AC=17;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 7487 . g t 1 q30 DP=5159;AC=17;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 7490 . c a 5 q30 DP=5309;AC=23;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 7493 . t g 2 q30 DP=5280;AC=19;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 7494 . g t 2 q30 DP=5279;AC=19;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 7495 . a g 8 q30 DP=5260;AC=25;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 7496 . g t 1 q30 DP=5310;AC=18;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 7497 . a g 5 q30 DP=5313;AC=23;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 7498 . c a 7 q30 DP=5326;AC=25;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 7499 . t a 1 q30 DP=5272;AC=18;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 7499 . t g 30 PASS DP=5272;AC=36;AF=0.0068 SIVmac239M5SpXplasmid_reference_1269-10407 7503 . c a 7 q30 DP=5436;AC=25;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 7504 . a c 6 q30 DP=5403;AC=24;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 7507 . a c 4 q30 DP=5508;AC=23;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 7509 . t a 16 q30 DP=5483;AC=31;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 7509 . t g 1 q30 DP=5483;AC=18;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 7510 . g t 5 q30 DP=5482;AC=24;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 7511 . g t 2 q30 DP=5483;AC=20;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 7512 . g a 2 q30 DP=5488;AC=20;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 7512 . g t 2 q30 DP=5488;AC=20;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 7515 . c a 4 q30 DP=5455;AC=23;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 7517 . a c 1 q30 DP=5448;AC=18;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 7519 . a c 5 q30 DP=5491;AC=24;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 7520 . g t 1 q30 DP=5501;AC=19;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 7522 . t g 1 q30 DP=5541;AC=19;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 7526 . c a 1 q30 DP=5570;AC=18;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 7527 . t g 5 q30 DP=5547;AC=24;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 7528 . t a 1 q30 DP=5568;AC=18;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 7528 . t g 10 q30 DP=5568;AC=28;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 7529 . c a 2 q30 DP=5562;AC=21;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 7530 . t a 6 q30 DP=5542;AC=25;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 7530 . t g 22 q30 DP=5542;AC=34;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 7541 . t g 22 q30 DP=6141;AC=37;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 7546 . c a 1 q30 DP=6190;AC=21;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 7549 . c a 35 PASS DP=5938;AC=41;AF=0.0069 SIVmac239M5SpXplasmid_reference_1269-10407 7550 . c a 35 PASS DP=5919;AC=41;AF=0.0069 SIVmac239M5SpXplasmid_reference_1269-10407 7551 . c a 30 PASS DP=6307;AC=41;AF=0.0065 SIVmac239M5SpXplasmid_reference_1269-10407 7552 . t a 16 q30 DP=6617;AC=36;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 7552 . t g 18 q30 DP=6617;AC=37;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 7553 . c a 15 q30 DP=6888;AC=37;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 7554 . c a 13 q30 DP=6912;AC=36;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 7555 . t g 2 q30 DP=6900;AC=25;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 7563 . g t 2 q30 DP=6113;AC=23;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 7564 . c a 8 q30 DP=6126;AC=29;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 7570 . t g 24 q30 DP=6215;AC=38;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 7571 . t a 4 q30 DP=6185;AC=26;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 7571 . t g 18 q30 DP=6185;AC=35;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 7572 . c a 3 q30 DP=6215;AC=25;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 7579 . a c 1 q30 DP=6325;AC=22;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 7596 . t g 1 q30 DP=6108;AC=20;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 7602 . a c 3 q30 DP=6005;AC=24;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 7607 . g t 4 q30 DP=5957;AC=25;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 7613 . c a 1 q30 DP=5825;AC=19;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 7616 . g a 1 q30 DP=5796;AC=19;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 7616 . g t 13 q30 DP=5796;AC=31;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 7617 . g t 1 q30 DP=5789;AC=19;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 7618 . a c 1 q30 DP=5774;AC=20;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 7621 . t a 2 q30 DP=5490;AC=21;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 7623 . t a 1 q30 DP=5492;AC=19;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 7630 . a c 3 q30 DP=5141;AC=20;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 7638 . g t 1 q30 DP=4980;AC=16;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 7668 . t g 1 q30 DP=1970;AC=6;AF=0.0030 SIVmac239M5SpXplasmid_reference_1269-10407 7669 . a c 1 q30 DP=1824;AC=6;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 7676 . t a 7 q30 DP=1204;AC=7;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 7677 . t g 1 q30;ac5 DP=1193;AC=4;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 7680 . a c 3 q30 DP=1177;AC=5;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 7690 . g t 1 q30;ac5 DP=1158;AC=4;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 7696 . t g 3 q30 DP=1144;AC=5;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 7698 . c a 1 q30;ac5 DP=1187;AC=4;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 7708 . t g 8 q30 DP=1516;AC=9;AF=0.0059 SIVmac239M5SpXplasmid_reference_1269-10407 7712 . g t 1 q30 DP=1911;AC=6;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 7714 . t g 2 q30 DP=1974;AC=7;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 7727 . a c 8 q30 DP=2653;AC=14;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 7728 . a c 2 q30 DP=2680;AC=10;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 7729 . t a 3 q30 DP=2713;AC=11;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 7736 . t g 1 q30 DP=2803;AC=9;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 7741 . t g 9 q30 DP=3016;AC=16;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 7745 . g t 4 q30 DP=3098;AC=13;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 7748 . g t 4 q30 DP=3157;AC=14;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 7749 . g t 4 q30 DP=3221;AC=14;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 7750 . g a 1 q30 DP=3335;AC=11;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 7750 . g t 14 q30 DP=3335;AC=20;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 7757 . g t 6 q30 DP=3789;AC=18;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 7759 . c a 3 q30 DP=3819;AC=15;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 7761 . g t 1 q30 DP=3806;AC=12;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 7765 . t g 3 q30 DP=3910;AC=16;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 7769 . t g 3 q30 DP=4044;AC=16;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 7770 . t a 6 q30 DP=4055;AC=19;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 7770 . t g 3 q30 DP=4055;AC=16;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 7772 . c a 2 q30 DP=4021;AC=15;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 7772 . c t 4 q30 DP=4021;AC=17;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 7773 . c a 1 q30 DP=4045;AC=14;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 7774 . c a 3 q30 DP=4043;AC=16;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 7777 . c a 4 q30 DP=4059;AC=17;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 7779 . t a 2 q30 DP=4176;AC=16;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 7779 . t c 2 q30 DP=4176;AC=16;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 7779 . t g 21 q30 DP=4176;AC=27;AF=0.0065 SIVmac239M5SpXplasmid_reference_1269-10407 7781 . t g 13 q30 DP=4303;AC=24;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 7782 . t g 6 q30 DP=4335;AC=20;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 7784 . t g 2 q30 DP=4408;AC=16;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 7785 . t g 21 q30 DP=4401;AC=28;AF=0.0064 SIVmac239M5SpXplasmid_reference_1269-10407 7786 . t a 1 q30 DP=4409;AC=14;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 7786 . t g 18 q30 DP=4409;AC=27;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 7790 . g t 2 q30 DP=4341;AC=16;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 7793 . g t 1 q30 DP=4375;AC=14;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 7795 . c a 17 q30 DP=4517;AC=27;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 7796 . c a 32 PASS DP=4553;AC=33;AF=0.0072 SIVmac239M5SpXplasmid_reference_1269-10407 7797 . c a 15 q30 DP=4555;AC=26;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 7799 . t g 8 q30 DP=4682;AC=23;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 7800 . a c 15 q30 DP=4750;AC=27;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 7801 . t a 8 q30 DP=4772;AC=23;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 7801 . t g 96 PASS DP=4772;AC=51;AF=0.0107 SIVmac239M5SpXplasmid_reference_1269-10407 7802 . c a 4 q30 DP=4761;AC=20;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 7803 . c a 7 q30 DP=4825;AC=23;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 7805 . a c 3 q30 DP=4823;AC=19;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 7806 . c a 1 q30 DP=4823;AC=17;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 7808 . g t 5 q30 DP=4765;AC=21;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 7809 . g t 2 q30 DP=4748;AC=18;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 7810 . a c 2 q30 DP=4787;AC=18;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 7810 . a t 1 q30 DP=4787;AC=16;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 7812 . c a 1 q30 DP=4744;AC=16;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 7812 . c t 13 q30 DP=4744;AC=26;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 7813 . c a 11 q30 DP=4758;AC=25;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 7814 . g t 2 q30 DP=4758;AC=18;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 7815 . g t 6 q30 DP=4796;AC=22;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 7817 . a c 32 PASS DP=4789;AC=34;AF=0.0071 SIVmac239M5SpXplasmid_reference_1269-10407 7819 . t g 13 q30 DP=4772;AC=26;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 7821 . c a 1 q30 DP=4821;AC=17;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 7822 . c a 7 q30 DP=4850;AC=23;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 7823 . a c 6 q30 DP=4875;AC=22;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 7824 . a c 7 q30 DP=4891;AC=23;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 7825 . c a 4 q30 DP=4934;AC=21;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 7826 . c a 1 q30 DP=4937;AC=16;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 7827 . a c 22 q30 DP=4932;AC=31;AF=0.0063 SIVmac239M5SpXplasmid_reference_1269-10407 7828 . g t 2 q30 DP=4944;AC=18;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 7829 . a c 100 PASS DP=4918;AC=57;AF=0.0116 SIVmac239M5SpXplasmid_reference_1269-10407 7829 . a g 27 q30 DP=4918;AC=33;AF=0.0067 SIVmac239M5SpXplasmid_reference_1269-10407 7829 . a t 6 q30 DP=4918;AC=22;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 7830 . g t 13 q30 DP=4921;AC=27;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 7831 . a c 49 PASS DP=4906;AC=40;AF=0.0082 SIVmac239M5SpXplasmid_reference_1269-10407 7831 . a t 6 q30 DP=4906;AC=22;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 7832 . a c 30 PASS DP=4902;AC=34;AF=0.0069 SIVmac239M5SpXplasmid_reference_1269-10407 7833 . g t 5 q30 DP=4951;AC=22;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 7834 . g t 4 q30 DP=4945;AC=21;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 7835 . c a 13 q30 DP=4962;AC=27;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 7836 . a c 3 q30 DP=4954;AC=20;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 7837 . a c 26 q30 DP=4965;AC=33;AF=0.0066 SIVmac239M5SpXplasmid_reference_1269-10407 7838 . a c 17 q30 DP=4969;AC=29;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 7839 . g t 2 q30 DP=5041;AC=19;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 7840 . a c 28 q30 DP=5036;AC=34;AF=0.0068 SIVmac239M5SpXplasmid_reference_1269-10407 7841 . a c 4 q30 DP=5022;AC=21;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 7841 . a g 2 q30 DP=5022;AC=19;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 7842 . a c 1 q30 DP=4949;AC=17;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 7843 . g t 6 q30 DP=4979;AC=23;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 7844 . a c 58 PASS DP=4984;AC=43;AF=0.0086 SIVmac239M5SpXplasmid_reference_1269-10407 7844 . a g 35 PASS DP=4984;AC=36;AF=0.0072 SIVmac239M5SpXplasmid_reference_1269-10407 7845 . g t 14 q30 DP=5024;AC=28;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 7846 . a c 34 PASS DP=5035;AC=36;AF=0.0071 SIVmac239M5SpXplasmid_reference_1269-10407 7846 . a t 4 q30 DP=5035;AC=21;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 7847 . c a 4 q30 DP=5052;AC=21;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 7849 . g t 1 q30 DP=5039;AC=18;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 7850 . t a 1 q30 DP=5090;AC=17;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 7850 . t c 3 q30 DP=5090;AC=20;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 7850 . t g 1 q30 DP=5090;AC=18;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 7851 . g t 2 q30 DP=5123;AC=19;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 7852 . g t 12 q30 DP=5131;AC=27;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 7853 . a c 42 PASS DP=5115;AC=39;AF=0.0076 SIVmac239M5SpXplasmid_reference_1269-10407 7854 . g t 7 q30 DP=5119;AC=24;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 7855 . a c 27 q30 DP=5119;AC=34;AF=0.0066 SIVmac239M5SpXplasmid_reference_1269-10407 7855 . a t 1 q30 DP=5119;AC=17;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 7856 . a c 10 q30 DP=5088;AC=26;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 7857 . g t 1 q30 DP=5079;AC=17;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 7858 . g t 9 q30 DP=5014;AC=25;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 7860 . g t 1 q30 DP=4950;AC=16;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 7862 . t c 1 q30 DP=4946;AC=17;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 7862 . t g 4 q30 DP=4946;AC=21;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 7864 . g t 11 q30 DP=4965;AC=26;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 7867 . a c 7 q30 DP=5045;AC=24;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 7869 . a c 5 q30 DP=5029;AC=22;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 7872 . t a 38 PASS DP=5160;AC=38;AF=0.0074 SIVmac239M5SpXplasmid_reference_1269-10407 7872 . t c 100 PASS DP=5160;AC=63;AF=0.0122 SIVmac239M5SpXplasmid_reference_1269-10407 7872 . t g 22 q30 DP=5160;AC=32;AF=0.0062 SIVmac239M5SpXplasmid_reference_1269-10407 7873 . c a 15 q30 DP=5170;AC=29;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 7874 . c a 22 q30 DP=5123;AC=32;AF=0.0062 SIVmac239M5SpXplasmid_reference_1269-10407 7875 . t g 6 q30 DP=5124;AC=23;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 7876 . g t 17 q30 DP=5189;AC=30;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 7877 . g t 1 q30 DP=5197;AC=18;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 7878 . c a 1 q30 DP=5199;AC=18;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 7879 . c a 22 q30 DP=5163;AC=32;AF=0.0062 SIVmac239M5SpXplasmid_reference_1269-10407 7882 . g t 10 q30 DP=5151;AC=26;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 7883 . g t 3 q30 DP=5134;AC=20;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 7885 . a c 4 q30 DP=5066;AC=21;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 7887 . a c 19 q30 DP=5160;AC=31;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 7889 . a c 13 q30 DP=5165;AC=28;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 7891 . a c 31 PASS DP=5389;AC=37;AF=0.0069 SIVmac239M5SpXplasmid_reference_1269-10407 7892 . a c 15 q30 DP=5413;AC=30;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 7893 . t g 1 q30 DP=5413;AC=18;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 7895 . t g 4 q30 DP=5377;AC=22;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 7896 . a c 3 q30 DP=5344;AC=21;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 7897 . t a 1 q30 DP=5389;AC=18;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 7897 . t g 1 q30 DP=5389;AC=19;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 7898 . t a 2 q30 DP=5364;AC=20;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 7899 . c a 30 PASS DP=5279;AC=36;AF=0.0068 SIVmac239M5SpXplasmid_reference_1269-10407 7900 . a c 9 q30 DP=5089;AC=25;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 7901 . t a 1 q30 DP=5107;AC=17;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 7902 . t g 10 q30 DP=5126;AC=26;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 7903 . t a 1 q30 DP=5107;AC=18;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 7903 . t g 12 q30 DP=5107;AC=27;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 7904 . c a 5 q30 DP=5111;AC=22;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 7905 . c a 9 q30 DP=5069;AC=25;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 7908 . a c 32 PASS DP=4988;AC=35;AF=0.0070 SIVmac239M5SpXplasmid_reference_1269-10407 7909 . t a 14 q30 DP=5064;AC=28;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 7909 . t g 9 q30 DP=5064;AC=25;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 7910 . c a 7 q30 DP=5055;AC=24;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 7911 . c a 16 q30 DP=5026;AC=29;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 7913 . c a 8 q30 DP=4929;AC=24;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 7914 . c a 14 q30 DP=4897;AC=27;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 7920 . a c 9 q30 DP=4855;AC=24;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 7921 . t g 1 q30 DP=4844;AC=16;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 7924 . g t 2 q30 DP=4746;AC=18;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 7925 . c a 4 q30 DP=4897;AC=21;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 7926 . c a 10 q30 DP=4872;AC=25;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 7927 . t a 3 q30 DP=4856;AC=19;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 7927 . t c 10 q30 DP=4856;AC=25;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 7927 . t g 6 q30 DP=4856;AC=22;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 7928 . c a 16 q30 DP=4862;AC=28;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 7929 . t g 5 q30 DP=4841;AC=21;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 7931 . g a 1 q30 DP=4880;AC=16;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 7932 . a c 5 q30 DP=4882;AC=21;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 7933 . c a 1 q30 DP=4867;AC=16;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 7934 . t a 1 q30 DP=4711;AC=16;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 7934 . t g 2 q30 DP=4711;AC=18;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 7936 . g t 36 PASS DP=4711;AC=35;AF=0.0074 SIVmac239M5SpXplasmid_reference_1269-10407 7937 . g t 10 q30 DP=4686;AC=24;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 7938 . c a 4 q30 DP=4652;AC=20;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 7940 . a c 18 q30 DP=4637;AC=28;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 7941 . t g 2 q30 DP=4665;AC=17;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 7944 . a c 7 q30 DP=4607;AC=22;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 7945 . g t 4 q30 DP=4614;AC=19;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 7947 . a c 14 q30 DP=4596;AC=26;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 7950 . t a 1 q30 DP=4603;AC=15;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 7950 . t g 1 q30 DP=4603;AC=15;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 7951 . g t 7 q30 DP=4487;AC=21;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 7953 . a c 3 q30 DP=4535;AC=18;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 7954 . g t 3 q30 DP=4558;AC=18;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 7955 . a c 35 PASS DP=4556;AC=34;AF=0.0075 SIVmac239M5SpXplasmid_reference_1269-10407 7955 . a t 1 q30 DP=4556;AC=16;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 7956 . a c 3 q30 DP=4570;AC=18;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 7958 . c a 2 q30 DP=4412;AC=16;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 7959 . t g 14 q30 DP=4429;AC=25;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 7960 . t g 3 q30 DP=4418;AC=18;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 7961 . g t 1 q30 DP=4442;AC=15;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 7962 . c a 2 q30 DP=4444;AC=16;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 7966 . c a 6 q30 DP=4525;AC=21;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 7967 . g t 17 q30 DP=4514;AC=27;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 7968 . a c 15 q30 DP=4478;AC=26;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 7968 . a t 2 q30 DP=4478;AC=16;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 7969 . g t 5 q30 DP=4556;AC=20;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 7970 . a c 22 q30 DP=4494;AC=29;AF=0.0065 SIVmac239M5SpXplasmid_reference_1269-10407 7970 . a t 1 q30 DP=4494;AC=15;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 7971 . g t 2 q30 DP=4616;AC=17;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 7976 . c a 20 q30 DP=4715;AC=29;AF=0.0062 SIVmac239M5SpXplasmid_reference_1269-10407 7977 . c a 7 q30 DP=4684;AC=22;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 7977 . c t 1 q30 DP=4684;AC=15;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 7979 . g t 1 q30 DP=4547;AC=16;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 7980 . a c 4 q30 DP=4422;AC=19;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 7980 . a t 2 q30 DP=4422;AC=17;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 7981 . t a 2 q30 DP=4435;AC=17;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 7981 . t g 59 PASS DP=4435;AC=40;AF=0.0090 SIVmac239M5SpXplasmid_reference_1269-10407 7982 . c a 4 q30 DP=4398;AC=19;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 7983 . c a 7 q30 DP=4352;AC=21;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 7984 . t g 13 q30 DP=4326;AC=24;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 7985 . c a 7 q30 DP=4341;AC=21;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 7986 . c a 1 q30 DP=4331;AC=15;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 7986 . c t 1 q30 DP=4331;AC=15;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 7987 . a c 2 q30 DP=4391;AC=16;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 7988 . a c 2 q30 DP=4391;AC=17;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 7989 . c a 6 q30 DP=4415;AC=20;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 7990 . c a 31 PASS DP=4428;AC=32;AF=0.0072 SIVmac239M5SpXplasmid_reference_1269-10407 7992 . a c 16 q30 DP=4419;AC=26;AF=0.0059 SIVmac239M5SpXplasmid_reference_1269-10407 7992 . a t 2 q30 DP=4419;AC=16;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 7993 . t g 41 PASS DP=4410;AC=35;AF=0.0079 SIVmac239M5SpXplasmid_reference_1269-10407 7994 . a c 6 q30 DP=4405;AC=20;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 7994 . a g 7 q30 DP=4405;AC=21;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 7995 . c a 2 q30 DP=4506;AC=17;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 7996 . t a 21 q30 DP=4433;AC=28;AF=0.0063 SIVmac239M5SpXplasmid_reference_1269-10407 7996 . t c 1 q30 DP=4433;AC=14;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 7996 . t g 63 PASS DP=4433;AC=41;AF=0.0092 SIVmac239M5SpXplasmid_reference_1269-10407 7997 . c a 18 q30 DP=4450;AC=27;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 7998 . c a 2 q30 DP=4430;AC=17;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 8001 . a c 4 q30 DP=4320;AC=18;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 8001 . a g 3 q30 DP=4320;AC=17;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 8001 . a t 1 q30 DP=4320;AC=14;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 8002 . g a 1 q30 DP=4347;AC=14;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 8002 . g t 9 q30 DP=4347;AC=22;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 8003 . g a 1 q30 DP=4317;AC=14;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 8003 . g t 1 q30 DP=4317;AC=14;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 8005 . t a 5 q30 DP=4208;AC=19;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 8005 . t c 8 q30 DP=4208;AC=21;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 8005 . t g 1 q30 DP=4208;AC=14;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 8006 . c a 6 q30 DP=4339;AC=20;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 8007 . t g 8 q30 DP=4329;AC=21;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 8008 . c a 4 q30 DP=4351;AC=18;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 8012 . g a 1 q30 DP=4341;AC=15;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 8012 . g t 5 q30 DP=4341;AC=19;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 8013 . a c 1 q30 DP=4441;AC=14;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 8016 . c a 1 q30 DP=4514;AC=16;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 8017 . t a 1 q30 DP=4509;AC=15;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 8017 . t g 5 q30 DP=4509;AC=20;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 8020 . a c 1 q30 DP=4524;AC=16;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 8020 . a g 1 q30 DP=4524;AC=15;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 8021 . g t 1 q30 DP=4524;AC=16;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 8022 . a c 14 q30 DP=4417;AC=25;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 8022 . a g 3 q30 DP=4417;AC=18;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 8023 . g t 20 q30 DP=4485;AC=28;AF=0.0062 SIVmac239M5SpXplasmid_reference_1269-10407 8025 . a c 12 q30 DP=4409;AC=24;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 8025 . a t 1 q30 DP=4409;AC=14;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 8026 . t a 2 q30 DP=4453;AC=17;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 8026 . t g 23 q30 DP=4453;AC=29;AF=0.0065 SIVmac239M5SpXplasmid_reference_1269-10407 8027 . t a 1 q30 DP=4437;AC=15;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 8027 . t g 8 q30 DP=4437;AC=22;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 8028 . c a 2 q30 DP=4432;AC=16;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 8032 . a c 8 q30 DP=4421;AC=22;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 8033 . a c 1 q30 DP=4399;AC=14;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 8034 . g t 1 q30 DP=4482;AC=16;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 8035 . t a 1 q30 DP=4447;AC=14;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 8035 . t g 12 q30 DP=4447;AC=24;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 8036 . c a 13 q30 DP=4551;AC=25;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 8037 . c a 19 q30 DP=4551;AC=28;AF=0.0062 SIVmac239M5SpXplasmid_reference_1269-10407 8038 . t a 2 q30 DP=4546;AC=17;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 8038 . t g 8 q30 DP=4546;AC=22;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 8039 . c a 1 q30 DP=4515;AC=16;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 8040 . a c 4 q30 DP=4515;AC=19;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 8042 . g t 5 q30 DP=4679;AC=21;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 8043 . a c 3 q30 DP=4613;AC=18;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 8045 . t g 17 q30 DP=4519;AC=27;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 8047 . a c 3 q30 DP=4651;AC=19;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 8050 . t g 1 q30 DP=4493;AC=16;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 8051 . g t 4 q30 DP=4569;AC=19;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 8052 . a c 2 q30 DP=4570;AC=17;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 8053 . c a 6 q30 DP=4624;AC=21;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 8055 . t g 5 q30 DP=4561;AC=20;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 8056 . a c 5 q30 DP=4872;AC=21;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 8058 . c a 8 q30 DP=5005;AC=24;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 8059 . t g 14 q30 DP=5010;AC=28;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 8060 . a c 2 q30 DP=4974;AC=18;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 8061 . c a 1 q30 DP=5155;AC=17;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 8062 . a c 4 q30 DP=5138;AC=22;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 8063 . a c 11 q30 DP=5198;AC=27;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 8063 . a g 1 q30 DP=5198;AC=17;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 8064 . t a 4 q30 DP=5202;AC=22;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 8064 . t g 100 PASS DP=5202;AC=65;AF=0.0125 SIVmac239M5SpXplasmid_reference_1269-10407 8065 . a c 24 q30 DP=5188;AC=33;AF=0.0064 SIVmac239M5SpXplasmid_reference_1269-10407 8065 . a g 4 q30 DP=5188;AC=22;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 8066 . t g 75 PASS DP=5233;AC=49;AF=0.0094 SIVmac239M5SpXplasmid_reference_1269-10407 8067 . g t 1 q30 DP=5246;AC=17;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 8069 . g t 10 q30 DP=5283;AC=27;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 8070 . t c 7 q30 DP=5117;AC=24;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 8070 . t g 62 PASS DP=5117;AC=45;AF=0.0088 SIVmac239M5SpXplasmid_reference_1269-10407 8071 . g t 5 q30 DP=5098;AC=22;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 8072 . g a 1 q30 DP=5144;AC=17;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 8072 . g t 3 q30 DP=5144;AC=20;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 8073 . a g 19 q30 DP=5149;AC=31;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 8073 . a t 8 q30 DP=5149;AC=25;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 8076 . t g 51 PASS DP=5139;AC=42;AF=0.0082 SIVmac239M5SpXplasmid_reference_1269-10407 8077 . a c 1 q30 DP=5212;AC=18;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 8078 . t g 100 PASS DP=5220;AC=63;AF=0.0121 SIVmac239M5SpXplasmid_reference_1269-10407 8079 . t g 88 PASS DP=5232;AC=52;AF=0.0099 SIVmac239M5SpXplasmid_reference_1269-10407 8080 . t g 100 PASS DP=5269;AC=63;AF=0.0120 SIVmac239M5SpXplasmid_reference_1269-10407 8081 . c a 1 q30 DP=5277;AC=18;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 8082 . c a 2 q30 DP=5219;AC=19;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 8083 . a g 6 q30 DP=5223;AC=24;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 8083 . a t 2 q30 DP=5223;AC=20;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 8084 . t g 100 PASS DP=5219;AC=75;AF=0.0144 SIVmac239M5SpXplasmid_reference_1269-10407 8085 . g t 4 q30 DP=5221;AC=22;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 8086 . a c 24 q30 DP=5189;AC=33;AF=0.0064 SIVmac239M5SpXplasmid_reference_1269-10407 8086 . a g 100 PASS DP=5189;AC=84;AF=0.0162 SIVmac239M5SpXplasmid_reference_1269-10407 8087 . g t 24 q30 DP=5187;AC=33;AF=0.0064 SIVmac239M5SpXplasmid_reference_1269-10407 8088 . g t 5 q30 DP=5198;AC=23;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 8090 . g a 1 q30 DP=5176;AC=18;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 8090 . g t 15 q30 DP=5176;AC=29;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 8092 . t g 61 PASS DP=5360;AC=46;AF=0.0086 SIVmac239M5SpXplasmid_reference_1269-10407 8093 . c a 8 q30 DP=5393;AC=26;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 8094 . c a 8 q30 DP=5393;AC=26;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 8094 . c t 1 q30 DP=5393;AC=19;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 8095 . a c 1 q30 DP=5369;AC=18;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 8096 . g t 10 q30 DP=5376;AC=27;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 8098 . c a 5 q30 DP=5379;AC=23;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 8099 . c a 24 q30 DP=5327;AC=34;AF=0.0064 SIVmac239M5SpXplasmid_reference_1269-10407 8101 . t c 3 q30 DP=5393;AC=21;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 8101 . t g 100 PASS DP=5393;AC=57;AF=0.0106 SIVmac239M5SpXplasmid_reference_1269-10407 8102 . c a 1 q30 DP=5427;AC=19;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 8103 . t g 13 q30 DP=5428;AC=29;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 8104 . g t 2 q30 DP=5436;AC=20;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 8105 . g t 1 q30 DP=5438;AC=19;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 8106 . a g 13 q30 DP=5428;AC=29;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 8107 . g t 3 q30 DP=5429;AC=21;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 8108 . a c 8 q30 DP=5453;AC=26;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 8108 . a g 14 q30 DP=5453;AC=30;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 8108 . a t 1 q30 DP=5453;AC=18;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 8109 . t a 9 q30 DP=5337;AC=26;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 8109 . t g 89 PASS DP=5337;AC=53;AF=0.0099 SIVmac239M5SpXplasmid_reference_1269-10407 8110 . c a 1 q30 DP=5365;AC=18;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 8111 . t g 89 PASS DP=5348;AC=53;AF=0.0099 SIVmac239M5SpXplasmid_reference_1269-10407 8112 . g t 13 q30 DP=5371;AC=29;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 8113 . c a 1 q30 DP=5370;AC=18;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 8115 . a c 1 q30 DP=5398;AC=18;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 8117 . a c 3 q30 DP=5347;AC=21;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 8119 . a c 8 q30 DP=5358;AC=26;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 8119 . a g 100 PASS DP=5358;AC=64;AF=0.0119 SIVmac239M5SpXplasmid_reference_1269-10407 8119 . a t 5 q30 DP=5358;AC=23;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 8120 . g t 1 q30 DP=5375;AC=18;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 8121 . a c 2 q30 DP=5367;AC=20;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 8121 . a g 6 q30 DP=5367;AC=24;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 8122 . c a 5 q30 DP=5428;AC=24;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 8122 . c g 1 q30 DP=5428;AC=18;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 8122 . c t 1 q30 DP=5428;AC=19;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 8123 . t c 3 q30 DP=5424;AC=21;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 8123 . t g 91 PASS DP=5424;AC=54;AF=0.0100 SIVmac239M5SpXplasmid_reference_1269-10407 8124 . c a 13 q30 DP=5429;AC=29;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 8125 . t g 96 PASS DP=5394;AC=55;AF=0.0102 SIVmac239M5SpXplasmid_reference_1269-10407 8126 . t g 57 PASS DP=5392;AC=45;AF=0.0083 SIVmac239M5SpXplasmid_reference_1269-10407 8127 . g t 29 q30 DP=5393;AC=36;AF=0.0067 SIVmac239M5SpXplasmid_reference_1269-10407 8128 . c a 10 q30 DP=5381;AC=27;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 8129 . g t 10 q30 DP=5370;AC=27;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 8130 . g t 3 q30 DP=5353;AC=21;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 8131 . g t 3 q30 DP=5345;AC=21;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 8132 . c a 18 q30 DP=5309;AC=31;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 8132 . c g 1 q30 DP=5309;AC=18;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 8133 . g t 1 q30 DP=5314;AC=17;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 8134 . c a 10 q30 DP=5346;AC=27;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 8136 . t a 11 q30 DP=5394;AC=28;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 8136 . t c 11 q30 DP=5394;AC=28;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 8136 . t g 6 q30 DP=5394;AC=24;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 8137 . g t 23 q30 DP=5406;AC=34;AF=0.0063 SIVmac239M5SpXplasmid_reference_1269-10407 8138 . g a 3 q30 DP=5423;AC=21;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 8138 . g t 3 q30 DP=5423;AC=21;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 8141 . a c 100 PASS DP=5422;AC=79;AF=0.0146 SIVmac239M5SpXplasmid_reference_1269-10407 8141 . a g 34 PASS DP=5422;AC=38;AF=0.0070 SIVmac239M5SpXplasmid_reference_1269-10407 8141 . a t 40 PASS DP=5422;AC=40;AF=0.0074 SIVmac239M5SpXplasmid_reference_1269-10407 8143 . a c 52 PASS DP=5631;AC=45;AF=0.0080 SIVmac239M5SpXplasmid_reference_1269-10407 8143 . a g 11 q30 DP=5631;AC=29;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 8143 . a t 2 q30 DP=5631;AC=21;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 8144 . c a 1 q30 DP=5734;AC=19;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 8145 . t c 1 q30 DP=5709;AC=20;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 8145 . t g 14 q30 DP=5709;AC=31;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 8146 . t g 65 PASS DP=5695;AC=49;AF=0.0086 SIVmac239M5SpXplasmid_reference_1269-10407 8147 . a c 14 q30 DP=5725;AC=31;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 8147 . a t 1 q30 DP=5725;AC=20;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 8148 . t g 5 q30 DP=5721;AC=25;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 8149 . g t 5 q30 DP=5691;AC=25;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 8150 . g t 23 q30 DP=5677;AC=35;AF=0.0062 SIVmac239M5SpXplasmid_reference_1269-10407 8152 . a c 52 PASS DP=5431;AC=44;AF=0.0081 SIVmac239M5SpXplasmid_reference_1269-10407 8152 . a g 26 q30 DP=5431;AC=35;AF=0.0064 SIVmac239M5SpXplasmid_reference_1269-10407 8154 . a c 9 q30 DP=5435;AC=27;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 8154 . a g 1 q30 DP=5435;AC=19;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 8155 . c a 2 q30 DP=5880;AC=22;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 8156 . t a 5 q30 DP=5946;AC=26;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 8156 . t c 3 q30 DP=5946;AC=24;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 8156 . t g 40 PASS DP=5946;AC=43;AF=0.0072 SIVmac239M5SpXplasmid_reference_1269-10407 8157 . c a 10 q30 DP=6045;AC=30;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 8158 . t c 10 q30 DP=6037;AC=30;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 8158 . t g 28 q30 DP=6037;AC=39;AF=0.0065 SIVmac239M5SpXplasmid_reference_1269-10407 8159 . t g 8 q30 DP=6061;AC=29;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 8160 . a c 2 q30 DP=6072;AC=23;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 8163 . a c 39 PASS DP=6012;AC=43;AF=0.0072 SIVmac239M5SpXplasmid_reference_1269-10407 8163 . a g 19 q30 DP=6012;AC=35;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 8163 . a t 3 q30 DP=6012;AC=24;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 8165 . a c 34 PASS DP=5589;AC=39;AF=0.0070 SIVmac239M5SpXplasmid_reference_1269-10407 8165 . a g 10 q30 DP=5589;AC=28;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 8165 . a t 1 q30 DP=5589;AC=20;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 8169 . g t 9 q30 DP=5690;AC=28;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 8170 . g t 1 q30 DP=5704;AC=20;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 8171 . a c 2 q30 DP=5701;AC=21;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 8172 . a c 2 q30 DP=5697;AC=21;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 8174 . a c 3 q30 DP=5663;AC=22;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 8174 . a g 2 q30 DP=5663;AC=21;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 8175 . t g 1 q30 DP=5596;AC=18;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 8176 . g a 5 q30 DP=5555;AC=24;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 8176 . g t 10 q30 DP=5555;AC=28;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 8178 . a c 1 q30 DP=5565;AC=18;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 8181 . c a 1 q30 DP=5586;AC=19;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 8182 . t g 4 q30 DP=5560;AC=23;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 8183 . c a 13 q30 DP=5566;AC=30;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 8186 . a c 4 q30 DP=5541;AC=23;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 8187 . a c 17 q30 DP=5561;AC=32;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 8187 . a t 2 q30 DP=5561;AC=21;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 8188 . t a 15 q30 DP=5575;AC=31;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 8188 . t g 56 PASS DP=5575;AC=46;AF=0.0083 SIVmac239M5SpXplasmid_reference_1269-10407 8189 . c a 16 q30 DP=5711;AC=32;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 8190 . c a 18 q30 DP=5704;AC=33;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 8191 . c a 33 PASS DP=5696;AC=39;AF=0.0068 SIVmac239M5SpXplasmid_reference_1269-10407 8192 . c a 33 PASS DP=5693;AC=39;AF=0.0069 SIVmac239M5SpXplasmid_reference_1269-10407 8193 . a c 11 q30 DP=5690;AC=29;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 8196 . a c 55 PASS DP=5657;AC=46;AF=0.0081 SIVmac239M5SpXplasmid_reference_1269-10407 8199 . a c 29 q30 DP=5785;AC=38;AF=0.0066 SIVmac239M5SpXplasmid_reference_1269-10407 8200 . t g 2 q30 DP=5805;AC=22;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 8208 . g t 5 q30 DP=5659;AC=25;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 8209 . g t 4 q30 DP=5745;AC=24;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 8211 . c a 6 q30 DP=5711;AC=26;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 8218 . t c 6 q30 DP=5606;AC=25;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 8218 . t g 1 q30 DP=5606;AC=19;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 8221 . c a 1 q30 DP=5767;AC=20;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 8222 . t g 4 q30 DP=5771;AC=24;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 8223 . c a 9 q30 DP=5947;AC=29;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 8224 . t a 1 q30 DP=5913;AC=21;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 8224 . t c 25 q30 DP=5913;AC=37;AF=0.0063 SIVmac239M5SpXplasmid_reference_1269-10407 8226 . t g 2 q30 DP=6049;AC=23;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 8229 . t g 2 q30 DP=6027;AC=22;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 8230 . g t 1 q30 DP=6036;AC=20;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 8231 . a c 9 q30 DP=6001;AC=29;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 8232 . g t 1 q30 DP=5866;AC=20;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 8233 . g a 2 q30 DP=5932;AC=22;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 8233 . g t 2 q30 DP=5932;AC=22;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 8234 . g t 1 q30 DP=5807;AC=20;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 8240 . a c 10 q30 DP=6090;AC=30;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 8242 . t g 2 q30 DP=6017;AC=22;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 8247 . t a 3 q30 DP=6195;AC=25;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 8247 . t g 6 q30 DP=6195;AC=28;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 8250 . g t 5 q30 DP=6270;AC=27;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 8251 . g t 5 q30 DP=6310;AC=27;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 8252 . g t 2 q30 DP=6326;AC=24;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 8269 . c a 10 q30 DP=8422;AC=40;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 8270 . c a 5 q30 DP=8388;AC=36;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 8280 . c a 26 q30 DP=8504;AC=50;AF=0.0059 SIVmac239M5SpXplasmid_reference_1269-10407 8281 . c a 92 PASS DP=8483;AC=73;AF=0.0086 SIVmac239M5SpXplasmid_reference_1269-10407 8282 . c a 13 q30 DP=8583;AC=43;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 8285 . c a 3 q30 DP=8695;AC=34;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 8286 . t g 1 q30 DP=8709;AC=29;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 8302 . t g 20 q30 DP=8981;AC=49;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 8322 . t g 49 PASS DP=9374;AC=64;AF=0.0068 SIVmac239M5SpXplasmid_reference_1269-10407 8324 . t g 3 q30 DP=9310;AC=37;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 8328 . t a 5 q30 DP=9513;AC=40;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 8328 . t g 14 q30 DP=9513;AC=48;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 8333 . t g 2 q30 DP=10757;AC=40;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 8337 . t a 1 q30 DP=10615;AC=36;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 8344 . g t 5 q30 DP=9531;AC=40;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 8346 . t a 1 q30 DP=9523;AC=34;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 8346 . t g 10 q30 DP=9523;AC=45;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 8349 . t g 1 q30 DP=9468;AC=34;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 8350 . g t 7 q30 DP=9450;AC=42;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 8352 . c a 8 q30 DP=9591;AC=43;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 8353 . t g 65 PASS DP=9401;AC=70;AF=0.0074 SIVmac239M5SpXplasmid_reference_1269-10407 8355 . g t 1 q30 DP=9464;AC=33;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 8359 . g t 6 q30 DP=9447;AC=41;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 8360 . g t 18 q30 DP=9705;AC=51;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 8361 . g a 33 PASS DP=9663;AC=59;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 8361 . g t 9 q30 DP=9663;AC=45;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 8365 . t a 1 q30 DP=9716;AC=35;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 8365 . t g 1 q30 DP=9716;AC=35;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 8366 . c a 7 q30 DP=9719;AC=43;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 8372 . g t 5 q30 DP=9157;AC=38;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 8374 . c a 21 q30 DP=9200;AC=51;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 8375 . c a 99 PASS DP=9182;AC=79;AF=0.0086 SIVmac239M5SpXplasmid_reference_1269-10407 8382 . t a 8 q30 DP=9150;AC=42;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 8383 . c a 51 PASS DP=9215;AC=64;AF=0.0069 SIVmac239M5SpXplasmid_reference_1269-10407 8384 . c a 95 PASS DP=9236;AC=78;AF=0.0084 SIVmac239M5SpXplasmid_reference_1269-10407 8385 . c a 73 PASS DP=9489;AC=73;AF=0.0077 SIVmac239M5SpXplasmid_reference_1269-10407 8386 . c a 9 q30 DP=9507;AC=44;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 8393 . c a 16 q30 DP=9758;AC=50;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 8398 . a g 1 q30 DP=9804;AC=33;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 8401 . t a 2 q30 DP=9863;AC=37;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 8401 . t g 58 PASS DP=9863;AC=70;AF=0.0071 SIVmac239M5SpXplasmid_reference_1269-10407 8403 . c a 2 q30 DP=9895;AC=36;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 8407 . t a 1 q30 DP=9657;AC=33;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 8407 . t g 31 PASS DP=9657;AC=58;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 8411 . c a 14 q30 DP=10008;AC=50;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 8423 . c a 13 q30 DP=9987;AC=49;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 8424 . t a 1 q30 DP=9891;AC=33;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 8425 . c a 26 q30 DP=9789;AC=56;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 8435 . a c 1 q30 DP=9814;AC=35;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 8443 . g t 14 q30 DP=10047;AC=50;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 8444 . g t 31 PASS DP=10053;AC=60;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 8445 . g t 9 q30 DP=10021;AC=46;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 8446 . g t 5 q30 DP=10013;AC=42;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 8447 . g t 3 q30 DP=10112;AC=39;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 8449 . c a 5 q30 DP=10232;AC=43;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 8455 . g t 10 q30 DP=10337;AC=48;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 8456 . g a 2 q30 DP=9934;AC=38;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 8456 . g t 30 PASS DP=9934;AC=59;AF=0.0059 SIVmac239M5SpXplasmid_reference_1269-10407 8459 . t g 1 q30 DP=10808;AC=37;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 8460 . t g 9 q30 DP=10973;AC=50;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 8461 . t g 2 q30 DP=10942;AC=40;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 8463 . t g 11 q30 DP=10999;AC=52;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 8470 . g t 2 q30 DP=10244;AC=38;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 8471 . c a 12 q30 DP=10287;AC=50;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 8486 . t a 4 q30 DP=10988;AC=45;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 8486 . t g 25 q30 DP=10988;AC=61;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 8488 . t g 20 q30 DP=10928;AC=58;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 8500 . t g 10 q30 DP=10513;AC=49;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 8512 . g t 1 q30 DP=10596;AC=37;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 8515 . g t 9 q30 DP=10527;AC=48;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 8519 . t a 3 q30 DP=10511;AC=41;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 8519 . t g 10 q30 DP=10511;AC=49;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 8522 . t g 1 q30 DP=10690;AC=36;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 8525 . c a 4 q30 DP=10578;AC=43;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 8529 . t g 15 q30 DP=10358;AC=52;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 8531 . g t 1 q30 DP=9871;AC=35;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 8533 . c a 1 q30 DP=9881;AC=33;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 8535 . g t 1 q30 DP=9940;AC=35;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 8544 . c a 14 q30 DP=9931;AC=50;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 8545 . t g 16 q30 DP=9739;AC=50;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 8546 . c a 5 q30 DP=9771;AC=41;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 8551 . c a 6 q30 DP=9761;AC=42;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 8552 . c a 9 q30 DP=9540;AC=44;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 8558 . t g 13 q30 DP=9631;AC=48;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 8565 . c a 4 q30 DP=9292;AC=38;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 8566 . c a 29 q30 DP=9242;AC=55;AF=0.0060 SIVmac239M5SpXplasmid_reference_1269-10407 8567 . c a 41 PASS DP=9218;AC=60;AF=0.0065 SIVmac239M5SpXplasmid_reference_1269-10407 8575 . t g 99 PASS DP=9017;AC=78;AF=0.0087 SIVmac239M5SpXplasmid_reference_1269-10407 8576 . t g 57 PASS DP=9008;AC=65;AF=0.0072 SIVmac239M5SpXplasmid_reference_1269-10407 8590 . a c 1 q30 DP=8986;AC=32;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 8591 . a c 1 q30 DP=8921;AC=32;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 8593 . t g 2 q30 DP=8832;AC=32;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 8597 . t g 1 q30 DP=8662;AC=30;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 8598 . c a 9 q30 DP=8649;AC=40;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 8599 . c a 41 PASS DP=8400;AC=56;AF=0.0067 SIVmac239M5SpXplasmid_reference_1269-10407 8600 . c a 13 q30 DP=8564;AC=43;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 8611 . t a 1 q30 DP=7895;AC=27;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 8611 . t g 6 q30 DP=7895;AC=35;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 8617 . g t 1 q30 DP=7422;AC=25;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 8619 . g t 9 q30 DP=7385;AC=35;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 8621 . c a 7 q30 DP=7384;AC=33;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 8625 . g t 1 q30 DP=7305;AC=26;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 8629 . g t 3 q30 DP=7010;AC=27;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 8630 . a t 1 q30 DP=7020;AC=25;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 8633 . a g 2 q30 DP=6886;AC=26;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 8634 . g t 2 q30 DP=6622;AC=25;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 8635 . g t 4 q30 DP=6641;AC=27;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 8637 . g t 4 q30 DP=6580;AC=27;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 8640 . t g 1 q30 DP=6478;AC=22;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 8641 . t g 3 q30 DP=6422;AC=26;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 8643 . t g 11 q30 DP=6567;AC=33;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 8644 . t g 1 q30 DP=6475;AC=21;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 8645 . t g 8 q30 DP=6453;AC=30;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 8652 . t g 1 q30 DP=5094;AC=17;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 8653 . c a 4 q30 DP=5094;AC=21;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 8654 . c a 3 q30 DP=5092;AC=20;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 8656 . g t 1 q30 DP=4974;AC=16;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 8657 . c a 2 q30 DP=4898;AC=18;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 8658 . t a 1 q30 DP=4825;AC=16;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 8658 . t g 1 q30 DP=4825;AC=16;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 8659 . c a 4 q30 DP=4828;AC=20;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 8663 . c a 6 q30 DP=4780;AC=22;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 8664 . t a 1 q30 DP=4688;AC=15;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 8664 . t g 73 PASS DP=4688;AC=45;AF=0.0096 SIVmac239M5SpXplasmid_reference_1269-10407 8665 . t g 5 q30 DP=4699;AC=21;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 8666 . c a 11 q30 DP=4696;AC=25;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 8667 . c a 8 q30 DP=4699;AC=23;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 8668 . c a 16 q30 DP=4638;AC=27;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 8670 . g t 1 q30 DP=4637;AC=15;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 8671 . t a 4 q30 DP=4617;AC=19;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 8671 . t g 4 q30 DP=4617;AC=19;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 8672 . g t 14 q30 DP=4592;AC=26;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 8673 . g t 9 q30 DP=4620;AC=23;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 8674 . g t 4 q30 DP=4596;AC=19;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 8676 . t g 5 q30 DP=4557;AC=20;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 8677 . g t 1 q30 DP=4535;AC=15;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 8679 . c a 18 q30 DP=4622;AC=28;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 8680 . c a 9 q30 DP=4606;AC=23;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 8680 . c g 7 q30 DP=4606;AC=22;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 8681 . c a 19 q30 DP=4586;AC=28;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 8682 . t a 1 q30 DP=4564;AC=15;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 8682 . t g 19 q30 DP=4564;AC=28;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 8683 . t g 3 q30 DP=4552;AC=18;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 8684 . g t 9 q30 DP=4562;AC=23;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 8685 . g t 4 q30 DP=4474;AC=19;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 8686 . g t 23 q30 DP=4469;AC=29;AF=0.0065 SIVmac239M5SpXplasmid_reference_1269-10407 8687 . g t 2 q30 DP=4444;AC=17;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 8688 . a g 18 q30 DP=4244;AC=26;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 8690 . a g 1 q30 DP=4207;AC=14;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 8694 . t g 2 q30 DP=4310;AC=16;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 8695 . c a 13 q30 DP=4310;AC=24;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 8699 . c a 2 q30 DP=4283;AC=16;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 8701 . t g 6 q30 DP=4038;AC=19;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 8702 . g t 3 q30 DP=4038;AC=16;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 8703 . g t 1 q30 DP=4030;AC=14;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 8705 . a c 7 q30 DP=4097;AC=20;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 8707 . t g 2 q30 DP=4075;AC=15;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 8708 . t g 8 q30 DP=4063;AC=20;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 8711 . a g 19 q30 DP=4113;AC=26;AF=0.0063 SIVmac239M5SpXplasmid_reference_1269-10407 8711 . a t 3 q30 DP=4113;AC=16;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 8712 . t a 1 q30 DP=4110;AC=13;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 8712 . t g 51 PASS DP=4110;AC=36;AF=0.0088 SIVmac239M5SpXplasmid_reference_1269-10407 8713 . c a 17 q30 DP=4111;AC=25;AF=0.0061 SIVmac239M5SpXplasmid_reference_1269-10407 8714 . c a 34 PASS DP=4096;AC=31;AF=0.0076 SIVmac239M5SpXplasmid_reference_1269-10407 8716 . a t 1 q30 DP=4128;AC=13;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 8717 . c a 7 q30 DP=4119;AC=20;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 8718 . t g 75 PASS DP=4119;AC=42;AF=0.0102 SIVmac239M5SpXplasmid_reference_1269-10407 8719 . c a 2 q30 DP=4112;AC=15;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 8720 . t g 1 q30 DP=4034;AC=14;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 8721 . g t 3 q30 DP=4139;AC=17;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 8723 . c a 14 q30 DP=4163;AC=24;AF=0.0058 SIVmac239M5SpXplasmid_reference_1269-10407 8724 . c a 12 q30 DP=4172;AC=23;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 8725 . t g 20 q30 DP=4111;AC=26;AF=0.0063 SIVmac239M5SpXplasmid_reference_1269-10407 8727 . c a 23 q30 DP=4222;AC=28;AF=0.0066 SIVmac239M5SpXplasmid_reference_1269-10407 8728 . a t 1 q30 DP=4222;AC=14;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 8729 . c a 3 q30 DP=4447;AC=18;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 8730 . t g 34 PASS DP=4272;AC=32;AF=0.0075 SIVmac239M5SpXplasmid_reference_1269-10407 8731 . t g 4 q30 DP=4287;AC=18;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 8733 . t g 13 q30 DP=4273;AC=24;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 8735 . a g 2 q30 DP=4204;AC=16;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 8736 . g t 8 q30 DP=4219;AC=21;AF=0.0050 SIVmac239M5SpXplasmid_reference_1269-10407 8738 . c a 37 PASS DP=4107;AC=32;AF=0.0078 SIVmac239M5SpXplasmid_reference_1269-10407 8740 . t g 11 q30 DP=4116;AC=22;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 8742 . t a 4 q30 DP=4237;AC=18;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 8742 . t g 10 q30 DP=4237;AC=22;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 8744 . t g 6 q30 DP=4272;AC=20;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 8745 . t g 8 q30 DP=4267;AC=21;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 8748 . a g 3 q30 DP=4215;AC=17;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 8749 . t a 4 q30 DP=4202;AC=18;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 8749 . t g 53 PASS DP=4202;AC=37;AF=0.0088 SIVmac239M5SpXplasmid_reference_1269-10407 8751 . c a 36 PASS DP=4166;AC=32;AF=0.0077 SIVmac239M5SpXplasmid_reference_1269-10407 8752 . c a 45 PASS DP=4039;AC=34;AF=0.0084 SIVmac239M5SpXplasmid_reference_1269-10407 8752 . c g 1 q30 DP=4039;AC=13;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 8752 . c t 6 q30 DP=4039;AC=19;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 8753 . c a 23 q30 DP=4040;AC=27;AF=0.0067 SIVmac239M5SpXplasmid_reference_1269-10407 8756 . a c 10 q30 DP=4014;AC=21;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 8756 . a g 5 q30 DP=4014;AC=18;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 8757 . a c 3 q30 DP=4018;AC=16;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 8758 . g t 2 q30 DP=4022;AC=15;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 8759 . a c 1 q30 DP=3950;AC=14;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 8759 . a g 5 q30 DP=3950;AC=18;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 8759 . a t 1 q30 DP=3950;AC=14;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 8761 . t g 63 PASS DP=3936;AC=38;AF=0.0097 SIVmac239M5SpXplasmid_reference_1269-10407 8762 . t g 100 PASS DP=3940;AC=51;AF=0.0129 SIVmac239M5SpXplasmid_reference_1269-10407 8763 . t g 1 q30 DP=3937;AC=13;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 8764 . g t 1 q30 DP=3925;AC=13;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 8765 . g t 9 q30 DP=3901;AC=20;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 8769 . c a 29 q30 DP=3850;AC=28;AF=0.0073 SIVmac239M5SpXplasmid_reference_1269-10407 8772 . g t 2 q30 DP=3905;AC=15;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 8773 . t a 1 q30 DP=3898;AC=13;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 8773 . t g 73 PASS DP=3898;AC=40;AF=0.0103 SIVmac239M5SpXplasmid_reference_1269-10407 8774 . c a 6 q30 DP=3899;AC=18;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 8776 . g t 2 q30 DP=3906;AC=15;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 8778 . c a 6 q30 DP=3897;AC=18;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 8779 . c a 9 q30 DP=3889;AC=20;AF=0.0051 SIVmac239M5SpXplasmid_reference_1269-10407 8780 . t g 5 q30 DP=3812;AC=17;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 8782 . t a 3 q30 DP=3857;AC=15;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 8782 . t g 57 PASS DP=3857;AC=36;AF=0.0093 SIVmac239M5SpXplasmid_reference_1269-10407 8783 . c a 15 q30 DP=3876;AC=23;AF=0.0059 SIVmac239M5SpXplasmid_reference_1269-10407 8787 . g t 6 q30 DP=3847;AC=18;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 8791 . g t 3 q30 DP=3728;AC=15;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 8792 . a g 5 q30 DP=3706;AC=17;AF=0.0046 SIVmac239M5SpXplasmid_reference_1269-10407 8793 . g t 5 q30 DP=3791;AC=17;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 8795 . t a 2 q30 DP=3759;AC=14;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 8795 . t g 2 q30 DP=3759;AC=14;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 8796 . t a 3 q30 DP=3750;AC=15;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 8796 . t g 19 q30 DP=3750;AC=24;AF=0.0064 SIVmac239M5SpXplasmid_reference_1269-10407 8802 . a g 1 q30 DP=3435;AC=12;AF=0.0035 SIVmac239M5SpXplasmid_reference_1269-10407 8804 . g a 3 q30 DP=3431;AC=14;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 8806 . c a 6 q30 DP=3426;AC=16;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 8809 . a g 19 q30 DP=3338;AC=22;AF=0.0066 SIVmac239M5SpXplasmid_reference_1269-10407 8809 . a t 1 q30 DP=3338;AC=11;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 8810 . c a 3 q30 DP=3371;AC=14;AF=0.0042 SIVmac239M5SpXplasmid_reference_1269-10407 8813 . c a 25 q30 DP=3331;AC=24;AF=0.0072 SIVmac239M5SpXplasmid_reference_1269-10407 8817 . a c 7 q30 DP=3292;AC=16;AF=0.0049 SIVmac239M5SpXplasmid_reference_1269-10407 8821 . c a 8 q30 DP=3274;AC=17;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 8822 . t g 9 q30 DP=3221;AC=17;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 8823 . t g 9 q30 DP=3257;AC=17;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 8824 . c a 2 q30 DP=3266;AC=12;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 8825 . t g 1 q30 DP=3246;AC=11;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 8829 . c a 1 q30 DP=3194;AC=10;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 8830 . a c 1 q30 DP=3052;AC=10;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 8831 . t g 5 q30 DP=3010;AC=14;AF=0.0047 SIVmac239M5SpXplasmid_reference_1269-10407 8832 . g t 1 q30 DP=2903;AC=9;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 8834 . c a 8 q30 DP=2896;AC=15;AF=0.0052 SIVmac239M5SpXplasmid_reference_1269-10407 8835 . t g 10 q30 DP=2836;AC=16;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 8838 . c a 11 q30 DP=2810;AC=16;AF=0.0057 SIVmac239M5SpXplasmid_reference_1269-10407 8846 . a t 1 q30 DP=2696;AC=9;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 8847 . a c 1 q30 DP=2663;AC=8;AF=0.0030 SIVmac239M5SpXplasmid_reference_1269-10407 8847 . a g 2 q30 DP=2663;AC=10;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 8848 . a g 8 q30 DP=2660;AC=14;AF=0.0053 SIVmac239M5SpXplasmid_reference_1269-10407 8849 . c a 3 q30 DP=2661;AC=11;AF=0.0041 SIVmac239M5SpXplasmid_reference_1269-10407 8850 . t a 1 q30 DP=2619;AC=9;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 8850 . t g 24 q30 DP=2619;AC=20;AF=0.0076 SIVmac239M5SpXplasmid_reference_1269-10407 8853 . c a 1 q30 DP=2613;AC=9;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 8858 . a g 1 q30 DP=2590;AC=8;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 8864 . g t 9 q30 DP=2538;AC=14;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 8865 . g a 4 q30 DP=2516;AC=11;AF=0.0044 SIVmac239M5SpXplasmid_reference_1269-10407 8865 . g t 2 q30 DP=2516;AC=9;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 8870 . t g 1 q30 DP=2426;AC=8;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 8872 . c a 4 q30 DP=2427;AC=11;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 8873 . c a 2 q30 DP=2415;AC=9;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 8874 . a c 1 q30 DP=2398;AC=8;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 8875 . c a 13 q30 DP=2395;AC=15;AF=0.0063 SIVmac239M5SpXplasmid_reference_1269-10407 8879 . g t 4 q30 DP=2241;AC=10;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 8880 . g t 3 q30 DP=2240;AC=9;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 8882 . a t 2 q30 DP=2190;AC=8;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 8885 . t a 2 q30 DP=2197;AC=8;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 8888 . c a 5 q30 DP=2069;AC=10;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 8889 . g t 7 q30 DP=2047;AC=11;AF=0.0054 SIVmac239M5SpXplasmid_reference_1269-10407 8890 . g t 1 q30 DP=2052;AC=7;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 8893 . a c 3 q30 DP=1861;AC=8;AF=0.0043 SIVmac239M5SpXplasmid_reference_1269-10407 8893 . a g 1 q30 DP=1861;AC=6;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 8896 . t a 1 q30 DP=1847;AC=6;AF=0.0032 SIVmac239M5SpXplasmid_reference_1269-10407 8898 . c a 1 q30 DP=1833;AC=6;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 8899 . t a 1 q30 DP=1778;AC=6;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 8899 . t g 2 q30 DP=1778;AC=7;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 8900 . g t 4 q30 DP=1769;AC=8;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 8901 . g t 3 q30 DP=1740;AC=7;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 8902 . g t 1 q30 DP=1736;AC=5;AF=0.0029 SIVmac239M5SpXplasmid_reference_1269-10407 8904 . a c 5 q30 DP=1448;AC=7;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 8904 . a g 7 q30 DP=1448;AC=8;AF=0.0055 SIVmac239M5SpXplasmid_reference_1269-10407 8906 . g t 7 q30 DP=1437;AC=8;AF=0.0056 SIVmac239M5SpXplasmid_reference_1269-10407 8907 . a c 1 q30;ac5 DP=1415;AC=4;AF=0.0028 SIVmac239M5SpXplasmid_reference_1269-10407 8910 . c a 2 q30 DP=1360;AC=5;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 8911 . g t 1 q30;ac5 DP=1340;AC=4;AF=0.0030 SIVmac239M5SpXplasmid_reference_1269-10407 8913 . t c 2 q30 DP=1337;AC=5;AF=0.0037 SIVmac239M5SpXplasmid_reference_1269-10407 8915 . g t 2 q30 DP=1324;AC=5;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 8916 . g t 1 q30;ac5 DP=1316;AC=4;AF=0.0030 SIVmac239M5SpXplasmid_reference_1269-10407 8918 . a c 1 q30;ac5 DP=1308;AC=4;AF=0.0031 SIVmac239M5SpXplasmid_reference_1269-10407 8920 . c a 2 q30 DP=1245;AC=5;AF=0.0040 SIVmac239M5SpXplasmid_reference_1269-10407 8920 . c t 4 q30 DP=1245;AC=6;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 8922 . c a 1 q30;ac5 DP=1208;AC=4;AF=0.0033 SIVmac239M5SpXplasmid_reference_1269-10407 8923 . c a 13 q30 DP=1206;AC=9;AF=0.0075 SIVmac239M5SpXplasmid_reference_1269-10407 8924 . c a 21 q30 DP=1202;AC=11;AF=0.0092 SIVmac239M5SpXplasmid_reference_1269-10407 8925 . a c 1 q30;ac5 DP=1188;AC=4;AF=0.0034 SIVmac239M5SpXplasmid_reference_1269-10407 8930 . c a 2 q30;ac5 DP=1102;AC=4;AF=0.0036 SIVmac239M5SpXplasmid_reference_1269-10407 8934 . a c 1 q30;ac5 DP=1058;AC=3;AF=0.0028 SIVmac239M5SpXplasmid_reference_1269-10407 8934 . a t 9 q30 DP=1058;AC=7;AF=0.0066 SIVmac239M5SpXplasmid_reference_1269-10407 8937 . t g 2 q30;ac5 DP=798;AC=3;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 8941 . a c 2 q30;ac5 DP=774;AC=3;AF=0.0039 SIVmac239M5SpXplasmid_reference_1269-10407 8942 . a g 1 q30;ac5 DP=760;AC=2;AF=0.0026 SIVmac239M5SpXplasmid_reference_1269-10407 8942 . a t 1 q30;ac5 DP=760;AC=2;AF=0.0026 SIVmac239M5SpXplasmid_reference_1269-10407 8946 . c a 13 q30 DP=492;AC=5;AF=0.0102 SIVmac239M5SpXplasmid_reference_1269-10407 8947 . a g 1 q30;ac5 DP=388;AC=1;AF=0.0026 SIVmac239M5SpXplasmid_reference_1269-10407 8948 . c a 1 q30;ac5 DP=387;AC=1;AF=0.0026 SIVmac239M5SpXplasmid_reference_1269-10407 8950 . g a 1 q30;ac5 DP=333;AC=1;AF=0.0030 SIVmac239M5SpXplasmid_reference_1269-10407 8952 . a t 1 q30;ac5 DP=266;AC=1;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 8953 . t a 2 q30;ac5 DP=260;AC=1;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 8953 . t g 2 q30;ac5 DP=260;AC=1;AF=0.0038 SIVmac239M5SpXplasmid_reference_1269-10407 8954 . t c 2 q30;ac5 DP=222;AC=1;AF=0.0045 SIVmac239M5SpXplasmid_reference_1269-10407 8956 . c t 2 q30;ac5 DP=210;AC=1;AF=0.0048 SIVmac239M5SpXplasmid_reference_1269-10407 8959 . t g 5 q30;ac5;dp100 DP=92;AC=1;AF=0.0109 SIVmac239M5SpXplasmid_reference_1269-10407 8963 . t a 100 dp100 DP=63;AC=15;AF=0.2381 SIVmac239M5SpXplasmid_reference_1269-10407 8965 . t g 6 q30;ac5;dp100 DP=64;AC=1;AF=0.0156 SIVmac239M5SpXplasmid_reference_1269-10407 8966 . t a 100 dp100 DP=62;AC=16;AF=0.2581 SIVmac239M5SpXplasmid_reference_1269-10407 8967 . c a 6 q30;ac5;dp100 DP=64;AC=1;AF=0.0156 SIVmac239M5SpXplasmid_reference_1269-10407 8968 . a t 6 q30;ac5;dp100 DP=64;AC=1;AF=0.0156 SIVmac239M5SpXplasmid_reference_1269-10407 8972 . g c 7 q30;ac5;dp100 DP=47;AC=1;AF=0.0213 SIVmac239M5SpXplasmid_reference_1269-10407 8973 . c a 7 q30;ac5;dp100 DP=48;AC=1;AF=0.0208 SIVmac239M5SpXplasmid_reference_1269-10407 8976 . t a 7 q30;ac5;dp100 DP=48;AC=1;AF=0.0208 SIVmac239M5SpXplasmid_reference_1269-10407 8978 . c a 7 q30;ac5;dp100 DP=48;AC=1;AF=0.0208 SIVmac239M5SpXplasmid_reference_1269-10407 8980 . g c 7 q30;ac5;dp100 DP=48;AC=1;AF=0.0208 SIVmac239M5SpXplasmid_reference_1269-10407 8981 . a t 7 q30;ac5;dp100 DP=48;AC=1;AF=0.0208 SIVmac239M5SpXplasmid_reference_1269-10407 8983 . a g 7 q30;ac5;dp100 DP=50;AC=1;AF=0.0200 SIVmac239M5SpXplasmid_reference_1269-10407 8986 . c a 7 q30;ac5;dp100 DP=50;AC=1;AF=0.0200 SIVmac239M5SpXplasmid_reference_1269-10407 8988 . g t 7 q30;ac5;dp100 DP=51;AC=1;AF=0.0196 SIVmac239M5SpXplasmid_reference_1269-10407 8990 . c a 7 q30;ac5;dp100 DP=51;AC=1;AF=0.0196 SIVmac239M5SpXplasmid_reference_1269-10407 8994 . t g 7 q30;ac5;dp100 DP=50;AC=1;AF=0.0200 SIVmac239M5SpXplasmid_reference_1269-10407 8995 . t c 7 q30;ac5;dp100 DP=50;AC=1;AF=0.0200 SIVmac239M5SpXplasmid_reference_1269-10407 8996 . g t 7 q30;ac5;dp100 DP=50;AC=1;AF=0.0200 SIVmac239M5SpXplasmid_reference_1269-10407 8999 . c a 7 q30;ac5;dp100 DP=50;AC=1;AF=0.0200 SIVmac239M5SpXplasmid_reference_1269-10407 9002 . t c 7 q30;ac5;dp100 DP=50;AC=1;AF=0.0200 SIVmac239M5SpXplasmid_reference_1269-10407 9003 . g a 7 q30;ac5;dp100 DP=50;AC=1;AF=0.0200 SIVmac239M5SpXplasmid_reference_1269-10407 9005 . g c 7 q30;ac5;dp100 DP=50;AC=1;AF=0.0200 SIVmac239M5SpXplasmid_reference_1269-10407 9005 . g t 17 q30;ac5;dp100 DP=50;AC=2;AF=0.0400 SIVmac239M5SpXplasmid_reference_1269-10407 9010 . t c 7 q30;ac5;dp100 DP=49;AC=1;AF=0.0204 SIVmac239M5SpXplasmid_reference_1269-10407 9010 . t g 7 q30;ac5;dp100 DP=49;AC=1;AF=0.0204 SIVmac239M5SpXplasmid_reference_1269-10407 9011 . c t 18 q30;ac5;dp100 DP=49;AC=2;AF=0.0408 SIVmac239M5SpXplasmid_reference_1269-10407 9013 . c a 18 q30;ac5;dp100 DP=49;AC=2;AF=0.0408 SIVmac239M5SpXplasmid_reference_1269-10407 9015 . c a 7 q30;ac5;dp100 DP=49;AC=1;AF=0.0204 SIVmac239M5SpXplasmid_reference_1269-10407 9020 . a t 18 q30;ac5;dp100 DP=47;AC=2;AF=0.0426 SIVmac239M5SpXplasmid_reference_1269-10407 9024 . g t 7 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7 q30;ac5;dp100 DP=48;AC=1;AF=0.0208 SIVmac239M5SpXplasmid_reference_1269-10407 9049 . c g 7 q30;ac5;dp100 DP=49;AC=1;AF=0.0204 SIVmac239M5SpXplasmid_reference_1269-10407 9055 . t c 7 q30;ac5;dp100 DP=49;AC=1;AF=0.0204 SIVmac239M5SpXplasmid_reference_1269-10407 9056 . c a 18 q30;ac5;dp100 DP=49;AC=2;AF=0.0408 SIVmac239M5SpXplasmid_reference_1269-10407 9058 . c g 7 q30;ac5;dp100 DP=47;AC=1;AF=0.0213 SIVmac239M5SpXplasmid_reference_1269-10407 9059 . a c 7 q30;ac5;dp100 DP=46;AC=1;AF=0.0217 SIVmac239M5SpXplasmid_reference_1269-10407 9060 . c a 7 q30;ac5;dp100 DP=46;AC=1;AF=0.0217 SIVmac239M5SpXplasmid_reference_1269-10407 9061 . c t 7 q30;ac5;dp100 DP=46;AC=1;AF=0.0217 SIVmac239M5SpXplasmid_reference_1269-10407 9063 . g t 8 q30;ac5;dp100 DP=44;AC=1;AF=0.0227 SIVmac239M5SpXplasmid_reference_1269-10407 9064 . c a 8 q30;ac5;dp100 DP=44;AC=1;AF=0.0227 SIVmac239M5SpXplasmid_reference_1269-10407 9066 . c a 8 q30;ac5;dp100 DP=44;AC=1;AF=0.0227 SIVmac239M5SpXplasmid_reference_1269-10407 9070 . g 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