comparison matches.xml @ 2:1ec42f033bb4 draft default tip

"planemo upload for repository https://github.com/phac-nml/refseq_masher commit 7176dbde2cafbf0858e806923a9f0bd3b2ebf7c0"

1:2c1cb37a3ffe

<tool id="refseq_masher_matches" name="RefSeq Masher Matches" version="0.1.2">
  <description>
    Find closest matching NCBI RefSeq Genomes to your sequences
  </description>
  <requirements>
    <requirement type="package" version="0.1.1">refseq_masher</requirement>
  </requirements>
  <command detect_errors="exit_code">
<![CDATA[

#import re

      <param name="top_n_results" value="1"/>
      <section name="adv">
        <param name="output_type" value="tab"/>
        <param name="min_kmer_threshold" value="2"/>
      </section>
      <output name="output_path_tab"
        value="SRR1203042_1-head4000-refseq_masher-matches-m2.tab"
        ftype="tabular"
        lines_diff="0">
      </output>
    </test>
  </tests>
  <help>
<![CDATA[

2:1ec42f033bb4

<tool id="refseq_masher_matches" name="RefSeq Masher Matches" version="0.1.2">
  <description>
    Find closest matching NCBI RefSeq Genomes to your sequences
  </description>
  <requirements>
    <requirement type="package" version="0.1.2">refseq_masher</requirement>
  </requirements>
  <command detect_errors="exit_code">
<![CDATA[

#import re

      <param name="top_n_results" value="1"/>
      <section name="adv">
        <param name="output_type" value="tab"/>
        <param name="min_kmer_threshold" value="2"/>
      </section>
      <output name="output_path_tab" ftype="tabular">
        <assert_contents>
          <has_n_columns n="22" />
          <has_n_lines n="2" />
        </assert_contents>
      </output>
    </test>
  </tests>
  <help>
<![CDATA[