Mercurial > repos > nml > seqtk_nml
comparison test-data/testref.fasta @ 0:e1867440ed36 draft
planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 008f4667b70be22e9ddf496738b3f74bb942ed28
| author | nml |
|---|---|
| date | Tue, 19 Sep 2017 16:37:42 -0400 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:e1867440ed36 |
|---|---|
| 1 >gi|360034408|ref|NC_016445.1|_2000000_2400000 | |
| 2 CCCGCTCGCCACGCTTTGGCCATAGTGCTGCCTTCTACGATGTGTAAACCGTGCAACTTAATGCCATCGGTGCCTACCTT | |
| 3 CAGTACTTGCTGTAACGTGGTGAGGTTTTCAGTGCGCTCTTCACCGGGTAACCCAACAATCAAGTGAGTACACACTTTGA | |
| 4 TACCTAACGCTCTAGCTTTGGCAGTGATCTCTGCGTAGCAGGCAAAATCGTGCCCGCGGTTAATGCGTTTTAAAGTCTGG | |
| 5 TCGTGCGCCGTCTGTAAACCCAATTCAAGCCAAATTTCATAACCTTGCTGCACATAATCGGCGAGCAACTTAAGCACCGC | |
| 6 ATCCGGTACACAATCAGGACGAGTGCCAACACACAACCCCACAATATCCGCTTCTTCTAGGGCTTGTTCGTACATGGATT | |
| 7 TCAGCACTTGCACTTCCGCATACGTGCTGGTGTAAGCTTGAAAATAAGCGAGGTATTTTTTGGCGCGTTTGATCTCCCCC | |
| 8 GCCCGATCTTTCAACTGCGCTTGAATACTCTGCTGCTGAGTATTTTCATCGGCAAACGACGCCACATTACAGAAAGTGCA | |
| 9 GCCGCCACGGCCTATCGTGCCATCGCGATTCGGACAACTGAATCCACCATGCAGCGTTAACTTATGGACCTTCTCTCCAT | |
| 10 AACGGCGTTGTAAATCTTGACCTATGGTGTTCACCAGTTGATGTAAATGCATCGGCTCGCTCAATCTAAATACAAATATC | |
| 11 TCTCACTACCATCCGTGTAATTTAATTACATTTCCAATCGAATTGGTCACAAATTTTAATCCCTCGCGTTTGATTTCAAA | |
| 12 CAGCGTCAAATCAATAAATAGGCATAAAATAAACACTATTTGCATTTTGTTTCTAGTTTGTTAAACAAAACATTCATCTA | |
| 13 GCTGTAAAAAAATAAACCAAACCGCAGACTTTTCGTTGGAATTTGCGCCAGCAAAATTGTAGGATACTTTCAGTTTTCCG | |
| 14 TGCTTTTTTGCTCAATTAATTACAAAAAACGCGGCAGACTATCGGTGATATTCCACACCTACCAAAAGAATCCACTAGTA | |
| 15 AAGTGGCTCGACAACAGGAATGTCACTAAGGATTGTCTTTCTCACAATATATTTCCTGTGAGAGACGGAAAGGACGCGGA | |
| 16 TCTGCTCCCTAAGCAGATTTCACTCAAAACAAAAAGGACAGGACGTATCGCCCAAGCGACTCATTCAGCGGATGCTGCTT | |
| 17 GATGCGTGGCGGGAATAACTGAGTGCACACTCAGTGCGGTTGCGTCCTCAATAACTGGAAGGATGTATCTATGGTAGATA | |
| 18 AAGCGCAACGTTCGCGTGGTCTTTATACGCCTGAGCTGGAGCATGATGCTTGTGGCATCGGCTTTGTCGCTCACCTGAAA | |
| 19 AATCGCAAGTCTCATCAGGTGGTCACTCAAGCTTTGGACATGCTCGCACGCATGGAACACCGTGGCGGTCAGGGTTGTGA | |
| 20 CCCTTGCAGCGGTGACGGTGCGGGTATTTTGTTGCAAAAACCTCACGAATTTTTACTCGAAGAAGCGGTTAAACTGGGGA | |
| 21 TCAAGCTGCCTTCATTCGAAAAGTACGGTGTTGGTGTGGTGCTGTTCCCGAAAGATGAACATAAACGCGCCCAATGCCGC | |
| 22 GACATTCTAGAACGCAATGCCAAACGCCTTGATCTGGATGTGATTGGCTACCGCGTTTTACCGACCAATAACAGCATGTT | |
| 23 GGGTGCCGACCCCCTCAGTACCGAACCACAATTTGAACACGTGTTTATTTCTGGCGGCCCGGGTATGCAGCCTGACGAGC | |
| 24 TAGAACGCAAGCTGTACGTGCTGCGTAACTACACCGTTCGCGTCTGCCTTGAGAGCGTGTCGAACATCGGTGATGATTTT | |
| 25 TATATCAACTCGATGTCGTACAAAACCTTGGTCTATAAAGGTCAGTTGACTACAGAGCAAGTACCGCAATACTTCCTCGA | |
| 26 CTTGCAAAATCCGACCATGGTGACAGCGTTAGCACTGGTGCACTCGCGTTTTTCGACCAACACCTTCCCGAAATGGCGAC | |
| 27 TGGCTCAACCTTTCCGCTACATCGCGCACAACGGTGAGATCAACACGGTTCGCGGTAACTTGAACTGGATGAAAGCGCGC | |
| 28 GAAGCGATTTTACAATCCAAGCTGTTTACTCAAGCTGAAATCGATATGCTGCTGCCTATCTGCCAAGAAGGCGCATCCGA | |
| 29 TTCGGCTAACTTTGACATGGTACTCGAACTGCTGGTGCTTTCCGGTCGCAGCTTGCCTCACGCTCTGATGATGATGATCC | |
| 30 CAGAAGCATGGCAAGAAAACAAAGCGATGGATCCTAAGCGCCGCGCCTTCTATCAATACCACGCTAACGTCATGGAACCT | |
| 31 TGGGACGGCCCAGCATCAGTGTGCTTTACCGATGGGGTACAAGTAGGCGCCACACTGGATCGTAACGGTCTGCGTCCGTC | |
| 32 TCGTTATACCGTGACCAAAGACGATTTTCTGATCATGGCTTCCGAATCTGGCGTCGTGGAAATTGATCCGGCCAATGTGG | |
| 33 AATACCGTGGTCGTCTGCAACCGGGACGTATCTTTGTTGCCGACTTAGAACAAGGCCGTATTATCTCAGATGAAGAGGTG | |
| 34 AAAGACGGTATCGCTTCGGCGCAGCCTTATGAAAAATGGGTAGAAGAAAACCTACTCAGTTTGAAAAAACTGCCGGATGC | |
| 35 CGACAACGTACATAGCCAACCGTCGCCAGAGCGTCTCCTCCATCGCCAACAAGCGTTTGGGGTGAGTAGCGAAGAGGTCA | |
| 36 ATGACATCATTCTGACTCTCGCGCAAACTGGTTATGAGCCGCTCGGTTCGATGGGGGCAGACTGGCCGGTCGCCGTGCTG | |
| 37 TCACACCAATCTCAGCATCTCTCCAACTACTTCAAGCAGTTGTTTGCCCAAGTGACCAACCCACCGATCGACCCGATCCG | |
| 38 TGAACGCATGGTGATGTCGCTCAACACTTATATCGGCCGCGATCAAAACTTGCTAGCAGAAACCCCTGCGCACTGTCGTA | |
| 39 AGGTCGAATTGGAATCGCCGGTCATTTCTAATGCTGAGCTTGAGAAAATCCGGGCAATCGATAACGAGCACTTGCAAGCC | |
| 40 AAAACCTTAGACATCGTATTTCGTGCCAGCGATGAACCGGGCAAGCTCGAACGCGCTCTGAAACGTATTTGCCAATACGC | |
| 41 GGAAGATGCGGTGATTGATGGCTATTCGATCATTTTGCTGACCGACCGCGCGGTAAACTCCAACCACGCCGCCATCCCAG | |
| 42 CCATGCTGGCTGTAGGCGCGGTGCACCATCACCTGATCCGCAAAGGTCTGCGTTCGAAATGCGGCATTGTGGTGGAAACT | |
| 43 GGTGATGCGCGTGAAACGCACCACTTTGCAACCCTACTCGGCTACGGTGCAAACGCAGTCAACCCGTATCTAGTGGTGGA | |
| 44 AACCATCGTCGATCTCAAGCGTCAGAAGAAACTCGATGCCGATGTTTCGGTAGAGAAATACTTCGAGAATTACCGTAAAG | |
| 45 GCGTGAACGGCGGTCTGTTGAAGATCTTCTCTAAAATGGGGATTTCGACGCTGCAGTCTTATCACGGTGCACAGATTTTT | |
| 46 GAAGCGCTCGGGATCAGTAAAGCGGTGGTCGATAAATACTTCACTGGCACCATCACCCGTATTCAAGGTTTGACCCTCGA | |
| 47 CGACATCGCTAAAGAAGTGTTGGTTCGTCATCGCATTGGTTACCCAACGCGTGAAATCCCACTGCAAGTGCTGGATGTCG | |
| 48 GCGGCGTGTATCAATGGAAACAGCGTGGTGAGCAGCATCTGTTTAACCCAGAAACGATTCACCTGCTGCAAGAATCGACT | |
| 49 CGCCACAAAAATTATCAGCAGTTCAAGAAGTACGCAGCCGCGGTGGATAGCCAAGGCGATAAAGCCGTTACTCTGCGCAG | |
| 50 TCAGCTTGATTTTGTGAAAAATCCAGCGGGTTCCATTCCGATTGAGGAAGTGGAACCGATCGAGAGCATTGTGAAGCGCT | |
| 51 TTGCCACCGGTGCGATGTCGTTTGGGTCTATCTCTTACGAAGCGCACTCCACACTGGCGATTGCGATGAACCGTCTAGGC | |
| 52 GCGAAATCCAACTCCGGTGAAGGTGGTGAAGACCCAATGCGTTTTGAGCTAAATGCCAACGGTGATTCAGAGCGTTCAGC | |
| 53 GATCAAGCAAGTAGCATCTGGCCGTTTCGGCGTGACCTCTTACTATCTGACCAACGCAGATGAAATCCAGATCAAGATGG | |
| 54 CGCAAGGGGCGAAACCGGGCGAAGGTGGTCAGCTACCGGGTGATAAAGTCGATGAATGGATCGGGGCAACTCGTCACTCG | |
| 55 ACACCGGGCGTCGGCCTGATTTCGCCACCACCGCACCACGACATTTACTCTATCGAAGACTTAGCCCAGCTGATTTTCGA | |
| 56 TCTGAAAAACGCCAACCGCAAAGGTCGCGTCAACGTCAAACTGGTTTCTGAAGCCGGTGTCGGCACCATCGCATCGGGTG | |
| 57 TGGCTAAAGCCAAAGCTGACGTAGTACTGATTGCCGGTCACGATGGCGGTACGGGTGCATCACCCATCTCTTCTATCCGT | |
| 58 CATACCGGTTTACCTTGGGAACTGGGTCTGGCTGAAACCCACCAGACTCTGCTCAAAAACGGCCTGCGTAACCGCATTGT | |
| 59 GGTGCAAGCCGATGGACAGATGAAAACCCCACGCGATATCGCGATTGCGGTACTGTTGGGCGCTGAAGAATGGGGCGTCG | |
| 60 CAACCGCTGCACTGGTGGTTGAAGGCTGTATCATGATGCGTAAATGTCATAAAAACACTTGCCCTGTCGGTATCGCCACA | |
| 61 CAAAACAAAACTCTGCGTGAGCGTTTTGCTGGCCGTGTGGATGACGTTGTGACCTTCTTCCAATACATGGCACAAGGCCT | |
| 62 GCGTGAAATCATGGCTGAGCTCGGTTTCCGCACCATTAACGAAATGGTTGGCCAAGCGCACAAACTCAAAGTGCGTGATG | |
| 63 ATATTGGCCACTGGAAGTACAAAAACCTCGATCTGTCGCCGATCCTCTTTATTGAGCAGCCGCGCAGCGAAGATGGTATT | |
| 64 TACTGCCAGACTCAGCAGAACCACCAGCTCGAAAGCATACTGGATCGCACCTTGATCCAATTAGCAACGCCTGCCCTTGA | |
| 65 GCGTGGTGAAGCGGTCAAAGCAGAGCTACCGATCATCAACACCGATCGCAGTACCGGCACCATGTTGTCTAACGAAATCT | |
| 66 GTAAGGTTTACAAAGACCAAGGTCTACCACAGCCAATGCAGGTGAAATTCAACGGCAGTGCGGGACAATCTTTCGGGGCA | |
| 67 TTCCTCACTAAAGGCGTTTACTTTGAAGTGGAAGGCGATGCTAACGACTACTGGGGCAAAGGTCTTTCTGGTGGCACGCT | |
| 68 GGTGCTCTACCCGAACCGTAACGCCACCATAGTTCCGGAAGAGAACATTGTGGTCGGTAACGTCTGTTTCTACGGCGCAA | |
| 69 CCTCTGGCGAATCTTACATTCGCGGCCTAGCGGGCGAGCGTTTCTGCGTGCGTAACTCAGGTGCCAAAGTGGTGGTGGAA | |
| 70 GGTATCGGCGATCACGGCTGTGAATACATGACCGGCGGTGTCGCAGTGATCCTCGGTTCAACCGGCCGTAACTTCGCCGC | |
| 71 AGGTATGAGTGGCGGTGTGGCTTACGTGTGGGATAAATCTGGCGACTTCCAATCTAAGCTCAATGCAGAATTGGTTGATC | |
| 72 TGGACCCTATCGAAGCGGAAGACAGAGCCCTACTCAAAGAGATGTTAACCAAGCATGTTCAATTCACAGGAAGTGAAGTG | |
| 73 GCCAAAGCTTTCCTTGCCAACTTTGACGCAAGCCTAGCCACTATGGTCAAGGTCATGCCGCGTGATTACAAAGCGGTACT | |
| 74 GCAAAAGCGTAAAGCACAGGAGCAACAAGCCACATTAGCAGCGGAGGCGGTATAAATGGGTAAAGCAACCGGATTTTTAG | |
| 75 AATTTGGTCGTGAACTGCCGAAAAAAATCGACCCGGCAGAGCGCATCAAAAACAACAAAGAGTTTGTCCTTAACCAAGAG | |
| 76 TTTGGTAAGAAGATCAATCAGCAAGCTTCACGTTGTATGGATTGTGGCGTGCCGTTTTGTCATAACGGCTGCCCGATTGG | |
| 77 CAACATCATTCCCGAGTTTAACGATGCAGTGTATCGCGACAGTTGGGAAGAGGCTTGGAATATTCTGAGCTCGACCAACA | |
| 78 ACTTCCCAGAGTTTACCGGTCGTGTCTGCCCTGCACCTTGTGAAACCGCCTGTGTGCTTGGCATCAACCAAGATCCGATC | |
| 79 ACCATCTGTAACATTGAAAAAACCATTGTGGAACGTGCTTACCAAGAAGGCTATGCCAAGCCGAAAACGCCACGTTCACG | |
| 80 CACCGGAAAAACGGTCGCGATCATTGGCTCAGGCCCTGCGGGGCTGGCCGCGGCGGAGCAGTTGAATGCCGCGGGTCATA | |
| 81 GCGTCACCGTGTTTGAGCGGGATGAAAAAGTCGGCGGCTTGCTGCGCTTTGGCATTCCCGATTTCAAACTCGGTATGGAT | |
| 82 GTGATTGATCGCAAAATCAATCTGATGGAACAAGCGGGCGTTAAGTTCGTGGTCAATGCGCATATCGGTGTAGACATCAA | |
| 83 CGCTCAACAGTTGCGTCAGGAGTTTGATGCGGTATTGCTGACGGGCGGCTCAACCGTACCACGTGATCTGAGCATTCCCG | |
| 84 GACGTGATCTGAAAGGCGTTTACTTCGCGATGCAGTTCCTCGCGCAAAATAACCGCCGAGCCAATGGCATGGATCTGAAA | |
| 85 GGTGAAGAGATCCACGCTAAAGGCAAACATGTGGTAGTGATCGGAGGCGGCGATACTGGCTCCGACTGTGTCGGCACCTC | |
| 86 TAACCGCCACGGCGCTGCGAGTATCACTCAAGTGGAGATCATGCCGATCCCACCGCAAAAGCGCCCAGTGAATATGCCTT | |
| 87 GGCCGCAATATCCGATGATTCTGCGCACCTCTACCTCTCATGAAGAAGGCTGTGAGCGTCATTGGAACATCCTCACCAAA | |
| 88 GAGTTCATTGGTAATGAACAAGGTGAAGTGACGGGTCTACGCATCGCTGACATCGTTTGGAAAGATGCAGCCCCCGGTGA | |
| 89 GCGACCAAGCTTTGACGAAGTGGTGGGCAGTGAACGCGTCATTCCTTGTGATATGGCATTTCTGGCGATGGGCTTCTTGC | |
| 90 ATCCAGAGCCACACGGCGTGCTTGCTCAGTTGGGGATTAAGCTTGATGAGCGCGGCAATGTGGCGACGCAAGATTTTGCG | |
| 91 ACCAACCAAAAAGGCGTATTCGCCGCAGGTGATATGCGCACAGGCCAATCCTTGGTGGTGCGCTGTATCAACGAAGGTCG | |
| 92 CGAATGTGCGCGAGCCGTTGACACCTTCTTGATGGGCAATACCCATCTTGAGGCAAAAGCGGACTCACTCATGCTGTCAG | |
| 93 CATAATCCTCTGTTGGCGCGGGTGATGCATCCTCATCCGTGTCAACACAACCGTTTCCTTCCATATTGTTTTACTTCGGC | |
| 94 CAGCACTCCCTGCTGGCCTTTTTTATGCCTATTCTCATCACACGGGATAAAACCTTGAGTTATCTGTAACTGAGAGAAAA | |
| 95 CTATCCCATTGAATATAATGACATTATTTGAAGTATTCCTCGGCAAATACCCTGCAAACCCTATTTTCAACCAATAACTT | |
| 96 GACCTTTTGTACAATAAGCTATAGGTTGTGAATTCGGTGAAAATAAAATCCCGCAAAAATGTTAATTAATTAACCTGAAA | |
| 97 TGTTAGTTAATTATTCAAATTATAAAGATTTAAATGAATAGTTATACCCAAGCTACTTGAAGCCATCGTTAAACGGAAGT | |
| 98 GGATGAATCCCCATCAGCATAGATAACTATGTGATTGGAGTAGACAGACACCGCCCATACCGAGGCTGTTTCAAGGAGTA | |
| 99 AGGGAATTGTCATTTACTGTCTGGATGACAGAGATGCAAAGGGAGAATTGCAATGGCTCTATACGATCCAAGTCTTGAAA | |
| 100 AAGACAACTGTGGATTCGGCTTGATCGCGCACATGGAAGGGCAAGCCAGTCACAAACTCGTTCGTACCGCGATTTCAGCA | |
| 101 CTTGATCGCATGACTCACCGTGGCGGTATCGCCGCCGATGGTAAAACTGGTGATGGCTGTGGTCTGTTGCTGCAAAAACC | |
| 102 TGACTCTTATTTGCGCCTGATCGCAGAAGAGCAACATTGGAAACTCAGCAAACAGTACGCGATTGGCATGCTGTTTCTCA | |
| 103 GCCGAGATCCACACAAAGCGCAGCTGGCACAGCAAATTGTTAACCAAGAACTCGCTAAAGAAACCTTAAGCGTGGCAGGT | |
| 104 TGGCGCAAAGTGCCCACCAACCCGAAAGTGCTTGGCCCGATAGCCCTCGACTCTTTGCCCGATATTCAACAAGTCTTCAT | |
| 105 CTCCGCCCCGGCCGGTTGGCGTGAGCGCGATGTTGAGCGCCGTCTGTATATTGCGCGTCGTCGCATTGAAAAACAGATTA | |
| 106 CGGATGATCGCGATTTCTACATCTGCTCGCTCTCGACTCAAGTGTTGGTTTACAAAGGCCTGTGTATGCCCGCAGACCTA | |
| 107 CCACGCTTTTATCTCGACTTAGCCGATCTGCGTATGGAATCGGCGATTTGCTTGTTCCACCAACGTTTCTCCACCAATAC | |
| 108 TCAGCCACGCTGGCCGCTGGCTCAGCCGTTTCGCTATCTGGCGCACAATGGCGAAATCAACACCATTGAAGGTAACCGCC | |
| 109 AGTGGGCACGCGCTCGGGCTTATAAGTTCGCGTCACCGCTGCTGCCCGATTTGCAAAGCGCTGCCCCTTTTGTGAATGAA | |
| 110 ACCGGTTCGGACTCTTCGAGCCTAGACAACATGCTGGATCTGTTTTTAGCCGGCGGGATGGATATCTTCCGTGCGATGCG | |
| 111 CATGCTGGTTCCGCCCGCATGGCAAAACCATCCGGATATGGATCCGGATCTGCGTGCTTTCTACGATTTCAACTCCAAAC | |
| 112 ACATGGAGCCTTGGGATGGCCCGGCGGGGATCGTGCTGTCCGATGGTCGTTACGCCGCGTGTAACCTTGACCGTAACGGC | |
| 113 CTGCGTCCTGCGCGTTATGTGATCACCAAAGATAAGCTCATCACCCTCGCTTCAGAAGTCGGGATTTGGGATTACGCACC | |
| 114 AGATGAAGTGTCTGAAAAAGGTCGGGTTGGCCCCGGCGAGCTGCTGGTGATCGACACTCGCAAAGGCAAAATTTGGCAAT | |
| 115 CGAGCGAAATTGATAACGACCTAAAAAGCCGTCACCCCTATCGTGAGTGGATGGAAAATAACGTTCATAAACTCACGCCC |