Mercurial > repos > nml > sistr_cmd
diff test-data/sistr-results-13-1101.tabular @ 6:cf767360ede1 draft default tip
planemo upload for repository https://github.com/phac-nml/sistr_cmd commit 4a9d0e766264aab4b92d8971b70112f84e28e8cd
| author | nml |
|---|---|
| date | Fri, 20 Dec 2024 18:34:03 +0000 |
| parents | 17fcac7ddf54 |
| children |
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--- a/test-data/sistr-results-13-1101.tabular Fri Mar 19 20:09:37 2021 +0000 +++ b/test-data/sistr-results-13-1101.tabular Fri Dec 20 18:34:03 2024 +0000 @@ -1,2 +1,2 @@ -cgmlst_ST cgmlst_distance cgmlst_found_loci cgmlst_genome_match cgmlst_matching_alleles cgmlst_subspecies fasta_filepath genome h1 h2 mash_distance mash_genome mash_match mash_serovar mash_subspecies o_antigen qc_messages qc_status serogroup serovar serovar_antigen serovar_cgmlst -3782467861 0.045454545454545414 330 SRR2174054 315 enterica /galaxy/database/files/000/dataset_700.dat 13-1101-Paratyphi_B b 1,2 0.00178577 72308 929 Paratyphi B var. Java enterica 1,4,[5],12 INFO: Number of cgMLST330 loci found (n=330) PASS B Paratyphi B var. Java Paratyphi B|Paratyphi B var. Java|Limete Paratyphi B var. Java +antigenic_formula cgmlst_ST cgmlst_distance cgmlst_found_loci cgmlst_genome_match cgmlst_matching_alleles cgmlst_subspecies fasta_filepath genome h1 h2 mash_distance mash_genome mash_match mash_serovar mash_subspecies o_antigen predicted_serovar_in_list qc_messages qc_status serogroup serovar serovar_antigen serovar_cgmlst +1,4,[5],12:b:1,2 488443225 0.039393939393939426 330 SRR2174054 317 enterica /tmp/tmp656s4p6h/files/7/2/7/dataset_727ec044-4d5a-461a-a083-be31c3e5e1de.dat 13-1101-Paratyphi_B_varJava b 1,2 0.00178577 72308 929 Paratyphi B var. Java enterica 1,4,[5],12 Y INFO: Number of cgMLST330 loci found (n=330) | Perform d-tartrate test (dT) to differentiate between Paratyphi B and Paratyphi B var. Java. The dT+ result is indicative of variant Java. PASS B Paratyphi B var. Java Paratyphi B|Paratyphi B var. Java|Limete Paratyphi B var. Java