Mercurial > repos > nml > sistr_cmd


{"AE014613-699860": {"NZ_AOXE01000059.1_60": {"name": 712233770, "seq": "ATGCCTTTTACACTTGGTCAACGCTGGATCAGCGATACAGAAAGCGAGCTGGGACTTGGAACCGTTGTTGCGATGGATGCGCGAACCGTCACCTTACTTTTCCCGTCCACGGGGGAAAACCGCCTGTATGCGCGCAGTGATTCTCCCGTGACCCGCGTCATGTTCAACCCTGGCGATACGATTACAAGCCATGAAGGCTGGCAGCTACATATCGATGAAGTAAAAGAAGAAAATGGCCTGCTTGTTTATGTCGGCACCCGCCTGGATACCGAAGAAACCAATGTGACGTTGCGCGAAGTTCTGCTCGACAGCAAGTTGGTTTTCAGTAAGCCCCAGGATCGTCTGTTCGCCGGTCAAATCGATCGAATGGATCGGTTCGCGCTGCGCTATCGCGCCCGTAAATTTCAGAGCGAGCAGTACCGGATGCCATACAGCGGCCTGCGCGGTCAGCGGACCAACCTGATCCCGCATCAGCTTAATATCGCTCATGATGTGGGTCGTCGCCACGCGCCGCGCGTACTGCTGGCGGATGAAGTGGGCTTAGGTAAAACCATTGAAGCCGGGATGATTCTGCATCAACAGTTATTATCCGGCGCGGCGGAACGCGTATTGATCATCGTTCCGGAAACCCTGCAACACCAGTGGCTGGTAGAAATGCTGCGCCGTTTCAACCTGCGCTTCGCGCTGTTCGATGACGAACGCTATACCGAAGCGCAGCACGACGCGTATAACCCGTTTGAAACCGAACAACTGGTGATCTGCTCGCTGGATTTCGCCCGCCGCAATAAGCAGCGTCTGGAACATTTGTGCGACGCCGAGTGGGATTTGCTGGTGGTCGACGAAGCGCATCATCTGGTGTGGAGCACCGATGCGCCGAGCCGTGAATATATGGCCATCGAACAGTTAGCTGAACGCGTGCCGGGCGTGCTGCTGCTGACCGCCACGCCAGAACAGCTGGGGATGGAAAGCCATTTCGCCCGTCTGCGCCTGCTCGATCCGAACCGTTTCCACGATTTCGAACAGTTTGTCGAAGAACAGAAAAACTACCGCCCTGTCGCCGATGCGGTGGCCATGCTGCTGGCGGGCAATAAACTCAGCAACGACGAACTGAACAGACTGGGCGATCTGATCGGCGAACAGGATATTGAACCGCTGTTACAGGCCGCTAATAGCGATCGCGACGACGCGCAGGCCGCCCGTGATGAGCTGGTGTCGATGCTGATGGATCGCCACGGTACCAGCCGCGTTCTGTTCCGCAACACCCGTAACGGCGTCAAGGGGTTCCCGAAACGTGAACTGCATACGGTAAAACTGCCGCTGCCGACCCAGTATCAGACCGCCATTAAGGTCTCCGGCATTATGGGCGCGCGTAAAAGCGCGGAAGATCGCGCCCGCGATATGCTCTATCCGGAACAAATTTATCAGGAGTTCGAAGGCGATACCGGCACCTGGTGGAACTTCGACCCACGCGTTGAGTGGCTGATGGGCTATCTGACCAGCCATCGTTCGCAAAAAGTGCTGGTGATCTGCGCCAAGGCGACCACCGCGTTACAGCTGGAGCAGGTGCTGCGCGAACGCGAAGGCATCCGCGCCGCCGTGTTCCATGAGGGCATGTCGATTATCGAACGCGACCGCGCCGCCGCCTGGTTCGCCGAAGAAGATACCGGCGCGCAGGTGCTGTTATGTTCCGAAATCGGCTCCGAAGGACGTAACTTCCAGTTTGCCAGCAATCTGGTGATGTTCGACTTGCCGTTTAACCCGGATCTGCTGGAACAGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCATGATATCCAGATCCACGTCCCGTACCTGGAAAAAACCGCCCAGTCGGTGCTGGTTCGCTGGTATCACGAAGGGCTGGACGCCTTTGAGCACACTTGCCCGACCGGTCGCGCGATTTATGATTCAGCCTACGCCAGTCTGATTAACTATCTGGCCGCGCCTGAAGAAACCGACGGGTTTGACGATCTGATCAAATCCTGCCGCGAACAACATGAAGCGCTAAAAGCCCAGTTAGAACAGGGCCGCGACCGCCTGCTGGAGATCAACTCCAACGGTGGTGAAAAAGCCCAACAGCTTGCACAAAGCATTGAAGAACAGGACGACGACACCAACCTGATCGCGTTCGCCATGAACCTGTTCGATATCGTCGGCATTAACCAGGATGATCGCGGCGACAACCTGATCGTGCTGACGCCGTCCGACCACATGTTGGTGCCGGATTTCCCCGGCCTGCCGGAAGACGGTTGTACTATCACGTTTGAACGTGACGTAGCCCTGTCTCGCGAAGATGCGCAGTTTATTACCTGGGAACATCCGCTCATCCGTAACGGACTGGATCTGATCCTCTCCGGCGATACCGGCAGCAGCACCATTTCGCTGTTGAAAAATAAAGCGCTGCCCGTCGGCACGCTGCTGGTCGAACTGGTTTACGTCGTGGAAGCGCAGGCGCCGAAACAGCTACAACTGAACCGCTTCCTGCCGCCGACGCCGGTACGTATGCTGTTAGATAAAAACGGCAACAATCTGGCCGCCCAGGTCGAGTTTGAAACCTTCAACCGCCAGCTCAGCGCCGTGAATCGCCACACCGGTAGCAAACTGGTGAACGCCGTTCAACAGGACGTCCACGCCATTTTGCAACTGGGCGAGACGCAGATTGAACAGTCCGCCAGAGCGCTGATTGATAACGCGCGCCGCGAGGCAGATGAAAAACTGTCCGGGGAACTGTCGCGTCTGGAAGCGCTGCGCGCCGTCAACCCGAACATCCGCGACGACGAACTTGCCGCTATCGACAGCAACCGTCAGCAGGTGCTGGAAAGCCTGAATCAGGCAGGCTGGCGTCTGGACGCGCTGCGTCTTATCGTCGTCACGCACCAATAA", "blast_result": {"qseqid": "NZ_AOXE01000059.1_60|1987381665", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.96600000000001, "length": 2908, "mismatch": 0, "gapopen": 1, "qstart": 1, "qend": 2908, "sstart": 112697, "send": 109791, "evalue": 0.0, "bitscore": 5363.0, "qlen": 2908, "slen": 699860, "sseq": "ATGCCTTTTACACTTGGTCAACGCTGGATCAGCGATACAGAAAGCGAGCTGGGACTTGGAACCGTTGTTGCGATGGATGCGCGAACCGTCACCTTACTTTTCCCGTCCACGGGGGAAAACCGCCTGTATGCGCGCAGTGATTCTCCCGTGACCCGCGTCATGTTCAACCCTGGCGATACGATTACAAGCCATGAAGGCTGGCAGCTACATATCGATGAAGTAAAAGAAGAAAATGGCCTGCTTGTTTATGTCGGCACCCGCCTGGATACCGAAGAAACCAATGTGACGTTGCGCGAAGTTCTGCTCGACAGCAAGTTGGTTTTCAGTAAGCCCCAGGATCGTCTGTTCGCCGGTCAAATCGATCGAATGGATCGGTTCGCGCTGCGCTATCGCGCCCGTAAATTTCAGAGCGAGCAGTACCGGATGCCATACAGCGGCCTGCGCGGTCAGCGGACCAACCTGATCCCGCATCAGCTTAATATCGCTCATGATGTGGGTCGTCGCCACGCGCCGCGCGTACTGCTGGCGGATGAAGTGGGCTTAGGTAAAACCATTGAAGCCGGGATGATTCTGCATCAACAGTT-ATTATCCGGCGCGGCGGAACGCGTATTGATCATCGTTCCGGAAACCCTGCAACACCAGTGGCTGGTAGAAATGCTGCGCCGTTTCAACCTGCGCTTCGCGCTGTTCGATGACGAACGCTATACCGAAGCGCAGCACGACGCGTATAACCCGTTTGAAACCGAACAACTGGTGATCTGCTCGCTGGATTTCGCCCGCCGCAATAAGCAGCGTCTGGAACATTTGTGCGACGCCGAGTGGGATTTGCTGGTGGTCGACGAAGCGCATCATCTGGTGTGGAGCACCGATGCGCCGAGCCGTGAATATATGGCCATCGAACAGTTAGCTGAACGCGTGCCGGGCGTGCTGCTGCTGACCGCCACGCCAGAACAGCTGGGGATGGAAAGCCATTTCGCCCGTCTGCGCCTGCTCGATCCGAACCGTTTCCACGATTTCGAACAGTTTGTCGAAGAACAGAAAAACTACCGCCCTGTCGCCGATGCGGTGGCCATGCTGCTGGCGGGCAATAAACTCAGCAACGACGAACTGAACAGACTGGGCGATCTGATCGGCGAACAGGATATTGAACCGCTGTTACAGGCCGCTAATAGCGATCGCGACGACGCGCAGGCCGCCCGTGATGAGCTGGTGTCGATGCTGATGGATCGCCACGGTACCAGCCGCGTTCTGTTCCGCAACACCCGTAACGGCGTCAAGGGGTTCCCGAAACGTGAACTGCATACGGTAAAACTGCCGCTGCCGACCCAGTATCAGACCGCCATTAAGGTCTCCGGCATTATGGGCGCGCGTAAAAGCGCGGAAGATCGCGCCCGCGATATGCTCTATCCGGAACAAATTTATCAGGAGTTCGAAGGCGATACCGGCACCTGGTGGAACTTCGACCCACGCGTTGAGTGGCTGATGGGCTATCTGACCAGCCATCGTTCGCAAAAAGTGCTGGTGATCTGCGCCAAGGCGACCACCGCGTTACAGCTGGAGCAGGTGCTGCGCGAACGCGAAGGCATCCGCGCCGCCGTGTTCCATGAGGGCATGTCGATTATCGAACGCGACCGCGCCGCCGCCTGGTTCGCCGAAGAAGATACCGGCGCGCAGGTGCTGTTATGTTCCGAAATCGGCTCCGAAGGACGTAACTTCCAGTTTGCCAGCAATCTGGTGATGTTCGACTTGCCGTTTAACCCGGATCTGCTGGAACAGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCATGATATCCAGATCCACGTCCCGTACCTGGAAAAAACCGCCCAGTCGGTGCTGGTTCGCTGGTATCACGAAGGGCTGGACGCCTTTGAGCACACTTGCCCGACCGGTCGCGCGATTTATGATTCAGCCTACGCCAGTCTGATTAACTATCTGGCCGCGCCTGAAGAAACCGACGGGTTTGACGATCTGATCAAATCCTGCCGCGAACAACATGAAGCGCTAAAAGCCCAGTTAGAACAGGGCCGCGACCGCCTGCTGGAGATCAACTCCAACGGTGGTGAAAAAGCCCAACAGCTTGCACAAAGCATTGAAGAACAGGACGACGACACCAACCTGATCGCGTTCGCCATGAACCTGTTCGATATCGTCGGCATTAACCAGGATGATCGCGGCGACAACCTGATCGTGCTGACGCCGTCCGACCACATGTTGGTGCCGGATTTCCCCGGCCTGCCGGAAGACGGTTGTACTATCACGTTTGAACGTGACGTAGCCCTGTCTCGCGAAGATGCGCAGTTTATTACCTGGGAACATCCGCTCATCCGTAACGGACTGGATCTGATCCTCTCCGGCGATACCGGCAGCAGCACCATTTCGCTGTTGAAAAATAAAGCGCTGCCCGTCGGCACGCTGCTGGTCGAACTGGTTTACGTCGTGGAAGCGCAGGCGCCGAAACAGCTACAACTGAACCGCTTCCTGCCGCCGACGCCGGTACGTATGCTGTTAGATAAAAACGGCAACAATCTGGCCGCCCAGGTCGAGTTTGAAACCTTCAACCGCCAGCTCAGCGCCGTGAATCGCCACACCGGTAGCAAACTGGTGAACGCCGTTCAACAGGACGTCCACGCCATTTTGCAACTGGGCGAGACGCAGATTGAACAGTCCGCCAGAGCGCTGATTGATAACGCGCGCCGCGAGGCAGATGAAAAACTGTCCGGGGAACTGTCGCGTCTGGAAGCGCTGCGCGCCGTCAACCCGAACATCCGCGACGACGAACTTGCCGCTATCGACAGCAACCGTCAGCAGGTGCTGGAAAGCCTGAATCAGGCAGGCTGGCGTCTGGACGCGCTGCGTCTTATCGTCGTCACGCACCAATAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000059.1_60", "allele": 1987381665, "is_match": true, "allele_name": 712233770, "is_perfect": false, "has_perfect_match": false, "start_idx": 109790.0, "end_idx": 112696.0, "needs_revcomp": true, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000059.1_129": {"name": 278162969, "seq": "ATGGGTAAAATTATTGGTATCGACCTGGGTACTACCAACTCTTGTGTAGCGATTATGGATGGAACGCAGGCACGCGTGCTGGAGAACGCCGAGGGCGATCGCACTACGCCTTCTATCATTGCTTATACCCAGGATGGTGAAACTCTGGTTGGTCAGCCGGCTAAACGTCAGGCAGTGACAAACCCGCAAAACACCCTGTTTGCGATTAAACGCCTGATTGGCCGCCGCTTCCAGGACGAAGAAGTTCAACGTGACGTTTCTATCATGCCGTACAAAATCATCGGCGCCGACAACGGCGACGCATGGCTTGATGTGAAAGGTCAGAAAATGGCGCCGCCGCAGATTTCTGCCGAAGTGCTGAAGAAAATGAAGAAAACGGCTGAAGATTATCTGGGCGAACCGGTAACTGAAGCGGTTATCACCGTACCGGCTTACTTTAACGATGCGCAGCGTCAGGCTACCAAAGATGCTGGTCGTATCGCGGGGCTGGAAGTTAAACGTATCATCAACGAACCGACTGCCGCAGCGCTGGCTTACGGTCTGGATAAAGAAGTCGGCAACCGTACTATCGCGGTTTACGACCTCGGTGGTGGTACTTTCGATATCTCTATTATCGAAATCGACGAAGTTGATGGCGAAAAAACCTTTGAAGTTCTGGCAACCAACGGTGATACCCACCTGGGTGGTGAAGACTTCGATACCCGCCTGATCAACTACCTCGTTGACGAGTTTAAGAAAGATCAGGGCATCGACCTGCGTAACGATCCGCTGGCCATGCAGCGCCTGAAAGAAGCCGCAGAAAAAGCCAAAATCGAGCTGTCTTCTGCGCAGCAGACCGACGTGAACCTGCCGTACATTACCGCAGATGCCACCGGTCCGAAACACATGAACATCAAAGTGACCCGTGCGAAACTGGAAAGCCTGGTTGAAGATCTGGTGAACCGTTCTATCGAGCCGCTGAAAGTCGCACTGCAGGACGCTGGCCTGTCCGTGTCTGATATCAACGACGTGATCCTCGTCGGCGGTCAGACCCGTATGCCAATGGTGCAGAAAAAAGTGGCTGAGTTCTTCGGTAAAGAGCCGCGTAAAGACGTTAACCCGGACGAAGCTGTGGCTATCGGCGCAGCGGTACAGGGCGGCGTATTGACCGGTGATGTGAAAGACGTACTGCTGCTGGACGTTACCCCGCTGTCTCTGGGTATCGAAACGATGGGTGGCGTGATGACTCCGCTTATCACCAAAAACACCACCATCCCGACCAAGCACAGCCAGGTGTTCTCTACTGCGGAAGACAACCAGTCTGCGGTAACCATCCATGTGCTGCAGGGTGAGCGTAAACGTGCGTCTGATAACAAATCTCTGGGTCAGTTCAACCTGGATGGCATCAACCCGGCGCCGCGCGGTATGCCGCAGATCGAAGTCACCTTCGATATCGATGCTGACGGTATCCTGCACGTCTCCGCGAAAGATAAAAATAGCGGTAAAGAGCAGAAGATCACTATCAAGGCGTCTTCTGGTCTGAACGAGGAAGAAATTCAGAAAATGGTTCGCGATGCAGAAGCGAACGCTGAATCCGACCGTAAGTTCGAAGAGCTGGTTCAGACCCGTAACCAGGGTGACCATCTGCTGCACAGCACCCGTAAGCAGGTTGAAGAAGCAGGCGATAAACTGCCGGCTGATGACAAAACCGCTATCGAGTCTGCGCTGAGCGCGCTGGAAACTGCCCTGAAAGGCGAAGATAAAGCCGCTATCGAAGCGAAAATGCAGGAGCTGGCGCAGGTTTCCCAGAAACTGATGGAAATCGCTCAGCAGCAACATGCGCAGCAGCAGGCTGGCTCCGCCGACGCTTCTGCAAACAATGCGAAAGATGACGACGTTGTCGACGCTGAGTTTGAAGAAGTAAAAGATAAAAAATAA", "blast_result": {"qseqid": "NZ_AOXE01000059.1_129|2395931929", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.73899999999999, "length": 1917, "mismatch": 5, "gapopen": 0, "qstart": 1, "qend": 1917, "sstart": 11594, "send": 13510, "evalue": 0.0, "bitscore": 3513.0, "qlen": 1917, "slen": 699860, "sseq": "ATGGGTAAAATTATTGGTATCGACCTGGGTACTACCAACTCTTGTGTAGCGATTATGGATGGAACGCAGGCACGCGTGCTGGAGAACGCCGAGGGCGATCGCACTACGCCTTCTATCATTGCTTATACCCAGGATGGTGAAACTCTGGTTGGTCAGCCGGCTAAACGTCAGGCAGTGACAAACCCGCAAAACACCCTGTTTGCGATTAAACGCCTGATTGGCCGCCGCTTCCAGGACGAAGAAGTTCAACGTGACGTTTCTATCATGCCGTACAAAATCATCGGCGCCGACAACGGCGACGCATGGCTTGATGTGAAAGGTCAGAAAATGGCGCCGCCGCAGATTTCTGCCGAAGTGCTGAAGAAAATGAAGAAAACGGCTGAAGATTATCTGGGCGAACCGGTAACTGAAGCGGTTATCACCGTACCGGCTTACTTTAACGATGCGCAGCGTCAGGCTACCAAAGATGCTGGTCGTATCGCGGGGCTGGAAGTTAAACGTATCATCAACGAACCGACTGCCGCAGCGCTGGCTTACGGTCTGGATAAAGAAGTCGGCAACCGTACTATCGCGGTTTACGACCTCGGTGGTGGTACTTTCGATATCTCTATTATCGAAATCGACGAAGTTGATGGCGAAAAAACCTTTGAAGTTCTGGCAACCAACGGTGATACCCACCTGGGTGGTGAAGACTTCGATACCCGCCTGATCAACTACCTCGTTGACGAGTTTAAGAAAGATCAGGGCATCGACCTGCGTAACGATCCGCTGGCCATGCAGCGCCTGAAAGAAGCCGCAGAAAAAGCCAAAATCGAGCTGTCTTCTGCGCAGCAGACCGACGTGAACCTGCCGTACATTACCGCAGATGCCACCGGTCCGAAACACATGAACATCAAAGTGACCCGTGCGAAACTGGAAAGCCTGGTTGAAGATCTGGTGAACCGTTCTATCGAGCCGCTGAAAGTCGCACTGCAGGACGCTGGCCTGTCCGTGTCTGATATCAACGACGTGATCCTCGTCGGCGGTCAGACCCGTATGCCAATGGTGCAGAAAAAAGTGGCTGAGTTCTTCGGTAAAGAGCCGCGTAAAGACGTTAACCCGGACGAAGCTGTGGCTATCGGCGCAGCGGTACAGGGCGGCGTATTGACCGGTGATGTGAAAGACGTACTGCTGCTGGACGTTACCCCGCTGTCTCTGGGTATCGAAACGATGGGTGGCGTGATGACTCCGCTTATCACCAAAAACACCACCATCCCGACCAAGCACAGCCAGGTGTTCTCTACTGCGGAAGACAACCAGTCTGCGGTAACCATCCATGTGCTGCAGGGTGAGCGTAAACGTGCGTCTGATAACAAATCTCTGGGTCAGTTCAACCTGGATGGCATCAACCCGGCGCCGCGCGGTATGCCGCAGATCGAAGTCACCTTCGATATCGATGCTGACGGTATCCTGCACGTCTCCGCGAAAGATAAAAATAGCGGTAAAGAGCAGAAGATCACTATCAAGGCGTCTTCTGGTCTGAACGAGGAAGAAATTCAGAAAATGGTTCGCGATGCAGAAGCGAACGCTGAATCCGACCGTAAGTTCGAAGAGCTGGTTCAGACCCGTAACCAGGGTGACCATCTGCTGCACAGCACCCGTAAGCAGGTTGAAGAAGCAGGCGATAAACTGCCGGCTGATGACAAAACCGCTATCGAGTCTGCGCTGAGCGCGCTGGAAACTGCCCTGAAAGGCGAAGATAAAGCCGCTATCGAAGCGAAAATGCAGGAGCTGGCGCAGGTTTCCCAGAAACTGATGGAAATCGCTCAGCAGCAACATGCGCAGCAGCAGGCTGGCTCCGCCGACGCTTCTGCAAACAATGCGAAAGATGACGACGTTGTCGACGCTGAGTTTGAAGAAGTAAAAGATAAAAAATAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000059.1_129", "allele": 2395931929, "is_match": true, "allele_name": 278162969, "is_perfect": false, "has_perfect_match": false, "start_idx": 11593.0, "end_idx": 13509.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000059.1_42": {"name": 1495737522, "seq": "ATGAGCCAGCAAGTCATTATTTTTGATACGACCTTACGCGACGGCGAACAAGCGTTACAGGCCAGCCTGAGCGCGAAAGAGAAGCTGCAGATTGCCCTGGCCCTTGAGCGCATGGGTGTCGATGTCATGGAAGTGGGCTTCCCGGTCTCTTCTCCGGGTGATTTTGAATCCGTCCAAACCATCGCCCGCACCATCAAAAACAGCCGCGTTTGCGCCCTGGCGCGTTGTGTAGAAAAAGACATCGACGTTGCGGCACAGGCGCTGAAGGTCGCCGACGCGTTTCGTATCCATACTTTTATCGCCACCTCGCCAATGCACATCGCCACCAAGCTGCGCAGCACGCTGGATGAGGTCATCGAACGCGCGGTATACATGGTTAAGCGGGCGCGTAATTACACTGATGACGTGGAGTTCTCCTGCGAGGATGCTGGCCGGACGCCTGTTGACGATCTGGCGCGCGTGGTGGAAGCCGCTATAAACGCCGGCGCGAGAACCATCAATATTCCCGATACCGTGGGCTATACCATGCCGTTTGAGTTCGCGGGAATCATTTCCGGTCTGTATGAACGTGTCCCCAATATCGACAAAGCTATCATCTCCGTTCATACCCACGACGATTTAGGGATAGCGGTAGGCAACTCGCTGGCGGCAGTACATGCGGGCGCGCGTCAAGTTGAAGGCGCGATGAACGGTATCGGAGAACGTGCCGGTAACTGCGCGCTGGAAGAGGTGATCATGGCGATTAAAGTGCGCAAAGACATCATAAACGTACACACCAACATCAATCACCACGAAATCTGGCGCACCAGCCAGACCGTCAGCCAGATCTGTAACATGCCGATCCCGGCCAACAAAGCGATTGTTGGCAGCGGCGCTTTTGCCCACTCTTCCGGCATCCACCAGGATGGCGTCCTCAAGAACCGCGAAAACTATGAAATCATGACGCCAGAGTCCATCGGTCTGAACCAGATACAGCTGAACCTGACCTCCCGCTCTGGCCGTGCCGCCGTGAAACATCGCATGGAAGAGATGGGTTACAAGGACACAGACTACAACATGGGCCACCTGTACGACGCGTTCCTGAAGCTGGCGGACAAAAAAGGCCAGGTGTTCGACTATGACCTGGAAGCGCTGGCGTTTATTAATAAACAGCAAGAAGAACCAGAGCATTTCCGTCTGGATTACTTCAGCGTGCAGTCCGGCTCCAGCGATATCGCCACCGCTTCCGTGAAGCTGGCCTGTGGTGAAGAGATCAAGGCCGAGGCGGCGAACGGCAACGGCCCGGTCGACGCCATCTATCAGGCGATTAACCGCATCACTGGCTACGACGTTGAGTTGGTTAAATACGACCTGAACGCCAAAGGCCAGGGCAAAGACGCGCTGGGTCAGGTCGATATCGTCGTGAACCATCATGGTCGCCGCTTCCACGGCGTCGGGCTGGCGACGGATATCGTCGAATCCTCCGCCAAAGCGATGGTACACGTACTGAACAATATCTGGCGCGCCGCCGAAGTTGAAAAAGAATTGCAACGCAAAGCTCAAAATAAAGAGAACAACAAGGAAACCGTGTAA", "blast_result": {"qseqid": "NZ_AOXE01000059.1_42|1433795029", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.87299999999999, "length": 1572, "mismatch": 1, "gapopen": 1, "qstart": 1, "qend": 1571, "sstart": 135143, "send": 133572, "evalue": 0.0, "bitscore": 2891.0, "qlen": 1571, "slen": 699860, "sseq": "ATGAGCCAGCAAGTCATTATTTTTGATACGACCTTACGCGACGGCGAACAAGCGTTACAGGCCAGCCTGAGCGCGAAAGAGAAGCTGCAGATTGCCCTGGCCCTTGAGCGCATGGGTGTCGATGTCATGGAAGTGGGCTTCCCGGTCTCTTCTCCGGGTGATTTTGAATCCGTCCAAACCATCGCCCGCACCATCAAAAACAGCCGCGTTTGCGCCCTGGCGCGTTGTGTAGAAAAAGACATCGACGTTGCGGCACAGGCGCTGAAGGTCGCCGACGCGTTTCGTATCCATACTTTTATCGCCACCTCGCCAATGCACATCGCCACCAAGCTGCGCAGCACGCTGGATGAGGTCATCGAACGCGCGGTATACATGGTTAAGCGGGCGCGTAATTACACTGATGACGTGGAGTTCTCCTGCGAGGATGCTGGCCGGACGCCTGTTGACGATCTGGCGCGCGTGGTGGAAGCCGCTATAAACGCCGGCGCGAGAACCATCAATATTCCCGATACCGTGGGCTATACCATGCCGTTTGAGTTCGCGGGAATCATTTCCGGTCTGTATGAACGTGTCCCCAATATCGACAAAGCTATCATCTCCGTTCATACCCACGACGATTTAGGGATAGCGGTAGGCAACTCGCTGGCGGCAGTACATGCGGGCGCGCGTCAAGTTGAAGGCGCGATGAACGGTATCGGAGAACGTGCCGGTAACTGCGCGCTGGAAGAGGTGATCATGGCGATTAAAGTGCGCAAAGACATCATAAACGTACACACCAACATCAATCACCACGAAATCTGGCGCACCAGCCAGACCGTCAGCCAGATCTGTAACATGCCGATCCCGGCCAACAAAGCGATTGTTGGCAGCGGCGCTTTTGCCCACTCTTCCGGCATCCACCAGGATGGCGTCCTCAAGAACCGCGAAAACTATGAAATCATGACGCCAGAGTCCATCGGTCTGAACCAGATACAGCTGAACCTGACCTCCCGCTCTGGCCGTGCCGCCGTGAAACATCGCATGGAAGAGATGGGTTACAAGGACACAGACTACAACATGGGCCACCTGTACGACGCGTTCCTGAAGCTGGCGGACAAAAAAGGCCAGGTGTTCGACTATGACCTGGAAGCGCTGGCGTTTATTAATAAACAGCAAGAAGAACCAGAGCATTTCCGTCTGGATTACTTCAGCGTGCAGTCCGGCTCCAGCGATATCGCCACCGCTTCCGTGAAGCTGGCCTGTGGTGAAGAGATCAAGGCCGAGGCGGCGAACGGCAACGGCCCGGTCGACGCCATCTATCAGGCGATTAACCGCATCACTGGCTACGACGTTGAGTTGGTTAAATACGACCTGAACGCCAAAGGCCAGGGCAAAGACGCGCTGGGTCAGGTCGATATCGTCGTGAACCATCATGGTCGCCGCTTCCACGGCGTCGGGCTGGCGACGGATATCGTCGAATCCTCCGCCAAAGCGATGGTACACGTACTGAACAATATCTGGCGCGCCGCCGAAGTTGAAAAAGAATTGCAACGCAAAGCTCAAAATAAAGAGAACAACAAGGAAACCGTGTAA", "coverage": 1.0006365372374284, "is_trunc": false, "marker": "NZ_AOXE01000059.1_42", "allele": 1433795029, "is_match": true, "allele_name": 1495737522, "is_perfect": false, "has_perfect_match": false, "start_idx": 133571.0, "end_idx": 135142.0, "needs_revcomp": true, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000059.1_32": {"name": 2061008354, "seq": "GGTGGCAGATCGTAATTTGCGCGACCTTCTTGCTCCGTGGGTGGCTGGACTACCCGCGCGAGAACTGCGAGAGATGACGCTCGACAGCCGTGTGGCTGCGGCGGGCGATCTCTTTGTGGCAGTGGTGGGTCATCAGGCGGACGGGCGTCGTTATATCCCGCAGGCGATAGCGCAAGGCGTAGCTGCCATTATTGCAGAGGCGAAAGACGAGGCGAGTGACGGTGAGATTCGCGAAATGCACGGCGTACCAGTCGTCTATCTCAGCCAGCTCAATGAGCGTTTATCTGCGCTGGCGGGCCGCTTTTACCATGAGCCATCTGAAAACATGCGTCTGGTGGCGGTGACCGGCACCAATGGCAAGACCACCACCACCCAACTACTGGCGCAGTGGAGCCAGTTGCTCGGCGAAACCAGCGCAGTGATGGGGACGGTAGGTAACGGACTGTTGGGTAAAGTGATCCCGACGGAGAACACAACCGGTTCCGCAGTGGATGTTCAGCATGTGCTGGCCAGTCTGGTTGCGCAGGGCGCGACCTTCGGCGCTATGGAAGTCTCTTCTCACGGCCTGGTGCAGCATCGCGTGGCGGCGCTGAAATTTGCCGCCTCCGTGTTTACTAATTTGAGCCGCGACCATCTCGACTATCATGGCGATATGGCGCATTACGAGGCGGCAAAATGGATGCTTTATTCCACCCACCATCACGGTCAGGCAATCGTCAACGCCGATGATGAAGTTGGACGCCGCTGGCTGGCGTCGCTACCCGATGCGGTCGCGGTTTCAATGGAAGGGCATATCAACCCTAACTGTCACGGTCGTTGGCTGAAAGCGGAGGCGGTGGAGTACCACGACCGCGGAGTGACGATTCGTTTTGCTTCAAGCTGGGGTGAAGGCGAAATCGAAAGCTGCCTGATGGGCGCGTTTAACGTCAGCAACTTACTGCTGGCATTGGCGACGCTGCTGGCGCTGGGCTATCCGTTAACGGATTTGCTGAAAACCGCCGCGCGTTTGCAGCCGGTTTGCGGGCGTATGGAAGTGTTCACTGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCACACGCCGGATGCGCTGGAAAAAGCATTGCAGGCGGCGCGCCTGCACTGCGCCGGAAAATTGTGGTGCGTCTTTGGCTGTGGCGGGGATCGTGACAAAGGTAAGCGCCCACTCATGGGGGCCATTGCCGAAGAATTCGCGGATATCGTCGTGGTGACTGACGATAACCCGCGTACCGAGGAGCCGCGCGCCATTATCAACGATATTCTGGCCGGAATGCTGGACGCCGGGCAGGTCAGGGTAATGGAAGGCCGCGCTGAGGCGGTAACCAATGCCATTATGCAGGCAAAAGACAATGACGTCGTGCTGATTGCAGGTAAAGGGCACGAGGATTACCAGATTGTCGGCACGCAGCGTCTTGATTATTCAGACCGCGTGACCGCAGCGCGTTTGCTGGGGGTGATCGCATGA", "blast_result": {"qseqid": "NZ_AOXE01000059.1_32|1933796240", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.396, "length": 1489, "mismatch": 9, "gapopen": 0, "qstart": 1, "qend": 1489, "sstart": 144884, "send": 146372, "evalue": 0.0, "bitscore": 2700.0, "qlen": 1489, "slen": 699860, "sseq": "GGTGGCAGATCGTAATTTGCGCGACCTTCTTGCTCCGTGGGTGGCTGGACTACCCGCGCGAGAACTGCGAGAGATGACGCTCGACAGCCGTGTGGCTGCGGCGGGCGATCTCTTTGTGGCAGTGGTGGGTCATCAGGCGGACGGGCGTCGTTATATCCCGCAGGCGATAGCGCAAGGCGTAGCTGCCATTATTGCAGAGGCGAAAGACGAGGCGAGTGACGGTGAGATTCGCGAAATGCACGGCGTACCAGTCGTCTATCTCAGCCAGCTCAATGAGCGTTTATCTGCGCTGGCGGGCCGCTTTTACCATGAGCCATCTGAAAACATGCGTCTGGTGGCGGTGACCGGCACCAATGGCAAGACCACCACCACCCAACTACTGGCGCAGTGGAGCCAGTTGCTCGGCGAAACCAGCGCAGTGATGGGGACGGTAGGTAACGGACTGTTGGGTAAAGTGATCCCGACGGAGAACACAACCGGTTCCGCAGTGGATGTTCAGCATGTGCTGGCCAGTCTGGTTGCGCAGGGCGCGACCTTCGGCGCTATGGAAGTCTCTTCTCACGGCCTGGTGCAGCATCGCGTGGCGGCGCTGAAATTTGCCGCCTCCGTGTTTACTAATTTGAGCCGCGACCATCTCGACTATCATGGCGATATGGCGCATTACGAGGCGGCAAAATGGATGCTTTATTCCACCCACCATCACGGTCAGGCAATCGTCAACGCCGATGATGAAGTTGGACGCCGCTGGCTGGCGTCGCTACCCGATGCGGTCGCGGTTTCAATGGAAGGGCATATCAACCCTAACTGTCACGGTCGTTGGCTGAAAGCGGAGGCGGTGGAGTACCACGACCGCGGAGTGACGATTCGTTTTGCTTCAAGCTGGGGTGAAGGCGAAATCGAAAGCTGCCTGATGGGCGCGTTTAACGTCAGCAACTTACTGCTGGCATTGGCGACGCTGCTGGCGCTGGGCTATCCGTTAACGGATTTGCTGAAAACCGCCGCGCGTTTGCAGCCGGTTTGCGGGCGTATGGAAGTGTTCACTGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCACACGCCGGATGCGCTGGAAAAAGCATTGCAGGCGGCGCGCCTGCACTGCGCCGGAAAATTGTGGTGCGTCTTTGGCTGTGGCGGGGATCGTGACAAAGGTAAGCGCCCACTCATGGGGGCCATTGCCGAAGAATTCGCGGATATCGTCGTGGTGACTGACGATAACCCGCGTACCGAGGAGCCGCGCGCCATTATCAACGATATTCTGGCCGGAATGCTGGACGCCGGGCAGGTCAGGGTAATGGAAGGCCGCGCTGAGGCGGTAACCAATGCCATTATGCAGGCAAAAGACAATGACGTCGTGCTGATTGCAGGTAAAGGGCACGAGGATTACCAGATTGTCGGCACGCAGCGTCTTGATTATTCAGACCGCGTGACCGCAGCGCGTTTGCTGGGGGTGATCGCATGA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000059.1_32", "allele": 1933796240, "is_match": true, "allele_name": 2061008354, "is_perfect": false, "has_perfect_match": false, "start_idx": 144883.0, "end_idx": 146371.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000033.1_26": {"name": 3680021500, "seq": "ATGCTGAGTATTCTCTGGAATCTGGCTGCATTCATCATCGCACTGGGCGTGCTGATCACTGTGCATGAATTTGGTCATTTCTGGGTTGCCCGGCGCTGCGGTGTGCGAGTTGAGCGCTTTTCCATCGGTTTTGGCAAAGCGCTCTGGCGTCGTACCGATCGGTACGGCACCGAGTATGTCATCGCCCTGATCCCGCTGGGCGGCTACGTCAAAATGCTGGATGAGCGCGCCGAACCGGTAGCGCCGGAATTGCGTCGTCACGCCTTCAATAACAAAACGGTGGGCCAGCGCGCCGCAATTATTGCCGCAGGTCCGGTTGCGAACTTCATTTTTGCTATCTTTGCTTACTGGCTGGTCTTTATCATCGGCGTCCCTGGCGTTCGTCCGGTCATTGGCGAAATAACGCCCAACTCGATTGCTGCGCAGGCGCAAATTGCGCCTGGTACGGAACTTAAAGCCGTTGATGGTATCGAAACCCCTGATTGGGATGCCGTGCGTTTACAACTGGTGTCCAAAATTGGCGATCAGCAGACGACGGTGAGCGTCGCGCCGTTTGGCAGCGACCAGCGGCAGGACAAAACGCTTGATTTACGTCACTGGGCATTTGAGCCTGATAAGCAAGATCCTGTATCTTCTTTAGGGATTCGGCCCCGCGGGCCACAGATTGAACCGGTACTGTCAGAAGTGCAGGCGAATTCCGCAGCCAGTAAAGCGGGTTTGCAAGCAGGCGACAGGATCGTTAAAGTCGATGGTCAGCCGTTAACGCAGTGGATGAAATTCGTGACGTTTGTACGTGATAATCCCGGTAAGCCGTTAGCGTTAGAGATTGAAAGGCAGGGGAGCGCCTTGTCGTTGACGTTAACGCCGGATACGAAATCGGTTAACGGAAAGGCGGAAGGGTTTGCAGGCGTGGTGCCTAAAATTATTCCTCTGCCGGAAGAGTACAAGACTATACGCCAGTATGGGCCTTTTAGCGCCATCCTCGAAGCCACGGATAAGACGTGGCAGTTGATGAAGCTGACGGTCAATATGCTGGGTAAATTGATAACCGGTGATGTGAAACTGAACAACCTCAGTGGGCCGATTTCTATCGCTCAGGGGGCTGGGATGTCAGCGGAGTTCGGGGTGATTTATTACCTGATGTTCCTTGCGCTAATCAGCGTGAACTTAGGGATAATTAACCTGTTTCCGCTGCCCGTTCTTGACGGGGGTCATCTGCTGTTCCTGGCGATTGAAAAGCTTAAGGGCGGGCCGGTATCCGAGCGGGTTCAAGACTTTAGTTATCGCATTGGCTCGATTTTGCTGGTGTTGTTAATGGGGCTTGCACTTTTCAATGATTTCTCTCGGTTGTAA", "blast_result": {"qseqid": "NZ_AOXE01000033.1_26|2174459836", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.926, "length": 1353, "mismatch": 1, "gapopen": 0, "qstart": 1, "qend": 1353, "sstart": 257871, "send": 259223, "evalue": 0.0, "bitscore": 2494.0, "qlen": 1353, "slen": 699860, "sseq": "ATGCTGAGTATTCTCTGGAATCTGGCTGCATTCATCATCGCACTGGGCGTGCTGATCACTGTGCATGAATTTGGTCATTTCTGGGTTGCCCGGCGCTGCGGTGTGCGAGTTGAGCGCTTTTCCATCGGTTTTGGCAAAGCGCTCTGGCGTCGTACCGATCGGTACGGCACCGAGTATGTCATCGCCCTGATCCCGCTGGGCGGCTACGTCAAAATGCTGGATGAGCGCGCCGAACCGGTAGCGCCGGAATTGCGTCGTCACGCCTTCAATAACAAAACGGTGGGCCAGCGCGCCGCAATTATTGCCGCAGGTCCGGTTGCGAACTTCATTTTTGCTATCTTTGCTTACTGGCTGGTCTTTATCATCGGCGTCCCTGGCGTTCGTCCGGTCATTGGCGAAATAACGCCCAACTCGATTGCTGCGCAGGCGCAAATTGCGCCTGGTACGGAACTTAAAGCCGTTGATGGTATCGAAACCCCTGATTGGGATGCCGTGCGTTTACAACTGGTGTCCAAAATTGGCGATCAGCAGACGACGGTGAGCGTCGCGCCGTTTGGCAGCGACCAGCGGCAGGACAAAACGCTTGATTTACGTCACTGGGCATTTGAGCCTGATAAGCAAGATCCTGTATCTTCTTTAGGGATTCGGCCCCGCGGGCCACAGATTGAACCGGTACTGTCAGAAGTGCAGGCGAATTCCGCAGCCAGTAAAGCGGGTTTGCAAGCAGGCGACAGGATCGTTAAAGTCGATGGTCAGCCGTTAACGCAGTGGATGAAATTCGTGACGTTTGTACGTGATAATCCCGGTAAGCCGTTAGCGTTAGAGATTGAAAGGCAGGGGAGCGCCTTGTCGTTGACGTTAACGCCGGATACGAAATCGGTTAACGGAAAGGCGGAAGGGTTTGCAGGCGTGGTGCCTAAAATTATTCCTCTGCCGGAAGAGTACAAGACTATACGCCAGTATGGGCCTTTTAGCGCCATCCTCGAAGCCACGGATAAGACGTGGCAGTTGATGAAGCTGACGGTCAATATGCTGGGTAAATTGATAACCGGTGATGTGAAACTGAACAACCTCAGTGGGCCGATTTCTATCGCTCAGGGGGCTGGGATGTCAGCGGAGTTCGGGGTGATTTATTACCTGATGTTCCTTGCGCTAATCAGCGTGAACTTAGGGATAATTAACCTGTTTCCGCTGCCCGTTCTTGACGGGGGTCATCTGCTGTTCCTGGCGATTGAAAAGCTTAAGGGCGGGCCGGTATCCGAGCGGGTTCAAGACTTTAGTTATCGCATTGGCTCGATTTTGCTGGTGTTGTTAATGGGGCTTGCACTTTTCAATGATTTCTCTCGGTTGTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000033.1_26", "allele": 2174459836, "is_match": true, "allele_name": 3680021500, "is_perfect": false, "has_perfect_match": false, "start_idx": 257870.0, "end_idx": 259222.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000059.1_31": {"name": 4203409135, "seq": "ATGATTAGCGTAACGCTCAGCAAAATTGCCGATGTCCTTGGCGCCGAACACCGCGGGGCGGATCTCACGCTCGATACGGTCATTACCGACACACGGAAAGTGACGCCGGGATGCCTGTTCGTGGCGCTGAAAGGGGAACGCTTTGATGCGCATGATTTTGCTGATAAAGCAAAAGCGAACGGCGCTGGCGCCCTGCTGGTCAGTCGTCCTCTGGATATCGATCTTCCGCAGGTGATTGTAAAAGACACGCGTCAGGCATTTGGCCAACTGGCCGCCTGGGTACGTATGCAGGTACCGGCGCGGGTGGTGGCGTTAACCGGTTCGTCCGGCAAAACCTCGGTCAAAGAGATGACCGCCGCGATTCTTAGCCAGTGCGGAAATACTTTGTATACCGCAAGCAATTTTAACAACGACATCGGCGTGCCGATAACGCTGCTGCGCTTAAACCATGATTATGACTATGCGGTGATCGAGTTAGGCGCTAATCACCAGGGAGAAATCGCCTGGACCGTTAGCCTGACGCGCCCGGAAGCGGCGCTGGTCAATAACCTGGCGGCGGCGCATCTGGAAGGTTTCGGCTCGCTGGCCGGCGTGGCGAAAGCGAAAGGCGAAATCTATACCGGTTTGCCTGAGAACGGTATCGCGATTATGAATGCCGATAATAATGACTGGCTGAACTGGCAAAGCATTATTGGCGATCGTCAGGTGTGGCGCTTTTCGCCGAATGCGGCAAACAGCGACTTTACCGCTGCGAATATCCACGTGACGTCACACGGTACCGAATTTACCCTGCAAACGCCGATGGGCAGCATTGATGTGCTGCTGCCGTTGCCGGGGCGGCACAATATTGCCAACGCGCTGGCGGCCGCTGCTTTATCAATGGCGGTGGGGGCGACGCTGGCGGCGGTTAAAGCAGGGCTGGCGGCGTTAAAAGCCGTACCCGGGCGTCTGTTCCCGATTCAACTAAGTGAAAACCAACTGGTACTGGATGACGCTTATAACGCCAACGTCGGTTCGATGACCGCCGCAGTGCAGGTCCTTTCTGAAATGCCCGGCTACCGCGTGCTGGTGGTAGGCGATATGGCCGAGCTGGGCGCAGAAAGCGAAGCGTGCCACCTCCAGGTTGGCGAGGCCGCAAAAGCGGCGGGTATTGATCGCGTGTTAAGCACCGGAAAACTCAGTCAGGTTATCAGCCACGCCAGCGGCGTCGGCGAACATTTTGCCGATAAAGCCGCGCTCATTGCGCGTTTACACGCTCTGCTTCAGGAGCAACCGATGATGACTATTTTAGTGAAAGGATCACGCAGCGCCGCGATGGAAGATGTGGTTCATGCGTTACAGGAGAAAGGTTCATGTTAG", "blast_result": {"qseqid": "NZ_AOXE01000059.1_31|512799604", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.779, "length": 1358, "mismatch": 3, "gapopen": 0, "qstart": 2, "qend": 1359, "sstart": 146370, "send": 147727, "evalue": 0.0, "bitscore": 2492.0, "qlen": 1359, "slen": 699860, "sseq": "TGATTAGCGTAACGCTCAGCAAAATTGCCGATGTCCTTGGCGCCGAACACCGCGGGGCGGATCTCACGCTCGATACGGTCATTACCGACACACGGAAAGTGACGCCGGGATGCCTGTTCGTGGCGCTGAAAGGGGAACGCTTTGATGCGCATGATTTTGCTGATAAAGCAAAAGCGAACGGCGCTGGCGCCCTGCTGGTCAGTCGTCCTCTGGATATCGATCTTCCGCAGGTGATTGTAAAAGACACGCGTCAGGCATTTGGCCAACTGGCCGCCTGGGTACGTATGCAGGTACCGGCGCGGGTGGTGGCGTTAACCGGTTCGTCCGGCAAAACCTCGGTCAAAGAGATGACCGCCGCGATTCTTAGCCAGTGCGGAAATACTTTGTATACCGCAAGCAATTTTAACAACGACATCGGCGTGCCGATAACGCTGCTGCGCTTAAACCATGATTATGACTATGCGGTGATCGAGTTAGGCGCTAATCACCAGGGAGAAATCGCCTGGACCGTTAGCCTGACGCGCCCGGAAGCGGCGCTGGTCAATAACCTGGCGGCGGCGCATCTGGAAGGTTTCGGCTCGCTGGCCGGCGTGGCGAAAGCGAAAGGCGAAATCTATACCGGTTTGCCTGAGAACGGTATCGCGATTATGAATGCCGATAATAATGACTGGCTGAACTGGCAAAGCATTATTGGCGATCGTCAGGTGTGGCGCTTTTCGCCGAATGCGGCAAACAGCGACTTTACCGCTGCGAATATCCACGTGACGTCACACGGTACCGAATTTACCCTGCAAACGCCGATGGGCAGCATTGATGTGCTGCTGCCGTTGCCGGGGCGGCACAATATTGCCAACGCGCTGGCGGCCGCTGCTTTATCAATGGCGGTGGGGGCGACGCTGGCGGCGGTTAAAGCAGGGCTGGCGGCGTTAAAAGCCGTACCCGGGCGTCTGTTCCCGATTCAACTAAGTGAAAACCAACTGGTACTGGATGACGCTTATAACGCCAACGTCGGTTCGATGACCGCCGCAGTGCAGGTCCTTTCTGAAATGCCCGGCTACCGCGTGCTGGTGGTAGGCGATATGGCCGAGCTGGGCGCAGAAAGCGAAGCGTGCCACCTCCAGGTTGGCGAGGCCGCAAAAGCGGCGGGTATTGATCGCGTGTTAAGCACCGGAAAACTCAGTCAGGTTATCAGCCACGCCAGCGGCGTCGGCGAACATTTTGCCGATAAAGCCGCGCTCATTGCGCGTTTACACGCTCTGCTTCAGGAGCAACCGATGATGACTATTTTAGTGAAAGGATCACGCAGCGCCGCGATGGAAGATGTGGTTCATGCGTTACAGGAGAAAGGTTCATGTTAG", "coverage": 0.9992641648270787, "is_trunc": false, "marker": "NZ_AOXE01000059.1_31", "allele": 512799604, "is_match": false, "allele_name": 1208402430, "is_perfect": false, "has_perfect_match": false, "start_idx": 146368.0, "end_idx": 147726.0, "needs_revcomp": false, "trunc": false, "is_extended": true, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false, "qseq_msa": "ctgattagcgtaacgctcagcaaaattgccgatgtccttggcgccgaacaccgcggggcggatctcacgctcgatacggtcattaccgacacacggaaagtgacgccgggatgcctgttcgtggcgctgaaaggggaacgctttgatgcgcatgattttgctgataaagcaaaagcgaacggcgctggcgccctgctggtcagtcgtcctctggatatcgatcttccgcaggtgattgtaaaagacacgcgtcaggcatttggccaactggccgcctgggtacgtatgcaggtaccggcgcgggtggtggcgttaaccggttcgtccggcaaaacctcggtcaaagagatgaccgccgcgattcttagccagtgcggaaatactttgtataccgcaggcaattttaacaacgacatcggcgtgccgataacgctgctgcgcttaaaccatgattatgactatgcggtgatcgagttaggcgctaatcaccagggagaaatcgcctggaccgttagcctgacgcgcccggaagcggcgctggtcaataacctggcggcggcgcatctggaaggtttcggctcgctggccggcgtggcgaaagcgaaaggcgaaatctataccggtttgcctgagaacggtatcgcgattatgaatgccgataataatgactggctgaactggcaaagcattattggcgatcgtcaggtgtggcgcttttcgccgaatgcggcaaacagcgactttaccgctgcgaatatccacgtgacgtcacacggtaccgaatttaccctgcaaacgccgatgggcagcattgatgtgctgctgccgttgccggggcggcacaatattgccaacgcgctggcggccgctgctttatcaatggcggtgggggcgacgctggcggcggttaaagcagggctggcggcgttaaaagccgtacccgggcgtctgttcccgattcaactaagtgaaaaccaactggtactggatgacgcttataacgccaacgtcggttcgatgaccgccgcagtgcaggtcctttctgaaatgcccggctaccgcgtgctggtggtaggcgatatggccgagctgggcacagaaagcgaagcgtgccacctccaggttggcgaggccgcaaaagcggcgggtattgatcgcgtgttaagcaccggaaaactcagtcaggctatcagccacgccagcggcgtcggcgaacattttgccgataaagccgcgctcattgcgcgtttacacgctctgcttcaggagcaaccgatgatgactattttagtgaaaggatcacgcagcgccgcgatggaagatgtggttcatgcgttacaggagaaaggttcatgttag", "qseq_msa_trimmed": "ctgattagcgtaacgctcagcaaaattgccgatgtccttggcgccgaacaccgcggggcggatctcacgctcgatacggtcattaccgacacacggaaagtgacgccgggatgcctgttcgtggcgctgaaaggggaacgctttgatgcgcatgattttgctgataaagcaaaagcgaacggcgctggcgccctgctggtcagtcgtcctctggatatcgatcttccgcaggtgattgtaaaagacacgcgtcaggcatttggccaactggccgcctgggtacgtatgcaggtaccggcgcgggtggtggcgttaaccggttcgtccggcaaaacctcggtcaaagagatgaccgccgcgattcttagccagtgcggaaatactttgtataccgcaggcaattttaacaacgacatcggcgtgccgataacgctgctgcgcttaaaccatgattatgactatgcggtgatcgagttaggcgctaatcaccagggagaaatcgcctggaccgttagcctgacgcgcccggaagcggcgctggtcaataacctggcggcggcgcatctggaaggtttcggctcgctggccggcgtggcgaaagcgaaaggcgaaatctataccggtttgcctgagaacggtatcgcgattatgaatgccgataataatgactggctgaactggcaaagcattattggcgatcgtcaggtgtggcgcttttcgccgaatgcggcaaacagcgactttaccgctgcgaatatccacgtgacgtcacacggtaccgaatttaccctgcaaacgccgatgggcagcattgatgtgctgctgccgttgccggggcggcacaatattgccaacgcgctggcggccgctgctttatcaatggcggtgggggcgacgctggcggcggttaaagcagggctggcggcgttaaaagccgtacccgggcgtctgttcccgattcaactaagtgaaaaccaactggtactggatgacgcttataacgccaacgtcggttcgatgaccgccgcagtgcaggtcctttctgaaatgcccggctaccgcgtgctggtggtaggcgatatggccgagctgggcacagaaagcgaagcgtgccacctccaggttggcgaggccgcaaaagcggcgggtattgatcgcgtgttaagcaccggaaaactcagtcaggctatcagccacgccagcggcgtcggcgaacattttgccgataaagccgcgctcattgcgcgtttacacgctctgcttcaggagcaaccgatgatgactattttagtgaaaggatcacgcagcgccgcgatggaagatgtggttcatgcgttacaggagaaaggttcatgttag", "sseq_msa": "atgattagcgtaacgctcagcaaaattgccgatgtccttggcgccgaacaccgcggggcggatctcacgctcgatacggtcattaccgacacacggaaagtgacgccgggatgcctgttcgtggcgctgaaaggggaacgctttgatgcgcatgattttgctgataaagcaaaagcgaacggcgctggcgccctgctggtcagtcgtcctctggatatcgatcttccgcaggtgattgtaaaagacacgcgtcaggcatttggccaactggccgcctgggtacgtatgcaggtaccggcgcgggtggtggcgttaaccggttcgtccggcaaaacctcggtcaaagagatgaccgccgcgattcttagccagtgcggaaatactttgtataccgcaagcaattttaacaacgacatcggcgtgccgataacgctgctgcgcttaaaccatgattatgactatgcggtgatcgagttaggcgctaatcaccagggagaaatcgcctggaccgttagcctgacgcgcccggaagcggcgctggtcaataacctggcggcggcgcatctggaaggtttcggctcgctggccggcgtggcgaaagcgaaaggcgaaatctataccggtttgcctgagaacggtatcgcgattatgaatgccgataataatgactggctgaactggcaaagcattattggcgatcgtcaggtgtggcgcttttcgccgaatgcggcaaacagcgactttaccgctgcgaatatccacgtgacgtcacacggtaccgaatttaccctgcaaacgccgatgggcagcattgatgtgctgctgccgttgccggggcggcacaatattgccaacgcgctggcggccgctgctttatcaatggcggtgggggcgacgctggcggcggttaaagcagggctggcggcgttaaaagccgtacccgggcgtctgttcccgattcaactaagtgaaaaccaactggtactggatgacgcttataacgccaacgtcggttcgatgaccgccgcagtgcaggtcctttctgaaatgcccggctaccgcgtgctggtggtaggcgatatggccgagctgggcgcagaaagcgaagcgtgccacctccaggttggcgaggccgcaaaagcggcgggtattgatcgcgtgttaagcaccggaaaactcagtcaggttatcagccacgccagcggcgtcggcgaacattttgccgataaagccgcgctcattgcgcgtttacacgctctgcttcaggagcaaccgatgatgactattttagtgaaaggatcacgcagcgccgcgatggaagatgtggttcatgcgttacaggagaaaggttcatgttag", "sseq_msa_trimmed": "atgattagcgtaacgctcagcaaaattgccgatgtccttggcgccgaacaccgcggggcggatctcacgctcgatacggtcattaccgacacacggaaagtgacgccgggatgcctgttcgtggcgctgaaaggggaacgctttgatgcgcatgattttgctgataaagcaaaagcgaacggcgctggcgccctgctggtcagtcgtcctctggatatcgatcttccgcaggtgattgtaaaagacacgcgtcaggcatttggccaactggccgcctgggtacgtatgcaggtaccggcgcgggtggtggcgttaaccggttcgtccggcaaaacctcggtcaaagagatgaccgccgcgattcttagccagtgcggaaatactttgtataccgcaagcaattttaacaacgacatcggcgtgccgataacgctgctgcgcttaaaccatgattatgactatgcggtgatcgagttaggcgctaatcaccagggagaaatcgcctggaccgttagcctgacgcgcccggaagcggcgctggtcaataacctggcggcggcgcatctggaaggtttcggctcgctggccggcgtggcgaaagcgaaaggcgaaatctataccggtttgcctgagaacggtatcgcgattatgaatgccgataataatgactggctgaactggcaaagcattattggcgatcgtcaggtgtggcgcttttcgccgaatgcggcaaacagcgactttaccgctgcgaatatccacgtgacgtcacacggtaccgaatttaccctgcaaacgccgatgggcagcattgatgtgctgctgccgttgccggggcggcacaatattgccaacgcgctggcggccgctgctttatcaatggcggtgggggcgacgctggcggcggttaaagcagggctggcggcgttaaaagccgtacccgggcgtctgttcccgattcaactaagtgaaaaccaactggtactggatgacgcttataacgccaacgtcggttcgatgaccgccgcagtgcaggtcctttctgaaatgcccggctaccgcgtgctggtggtaggcgatatggccgagctgggcgcagaaagcgaagcgtgccacctccaggttggcgaggccgcaaaagcggcgggtattgatcgcgtgttaagcaccggaaaactcagtcaggttatcagccacgccagcggcgtcggcgaacattttgccgataaagccgcgctcattgcgcgtttacacgctctgcttcaggagcaaccgatgatgactattttagtgaaaggatcacgcagcgccgcgatggaagatgtggttcatgcgttacaggagaaaggttcatgttag"}}, "NZ_AOXE01000059.1_11": {"name": 1154766063, "seq": "ATGAGCGTTAAACAGCTCTGGCGCTGGCAAGGCGTTAACGATAAAGGTCAACTGGAACAAGACGTTGTATGGGTGGACAATCGTCTGGCGCTGATCATCACCCTGCAACATCAGCGCATTATGCCGCTTCGCATCAAGCGCATAAGCGTTAACGCCGCACTGTGGAAAGAAGAGCAAAGCGCTGAAATTATTCATCAGTTGGCCACGCTCATTCATGCCGGACTGACGCTTTCTGAAGGGCTGGAACTCCTTGCGAAACAGCATCCCCACCGACAATGGCAAGCGCTGTTGCGCACGCTGGCTCACGAGCTTGAACAGGGCGTCCCTTTTTCCAGCGCATTAGTCTCCTGGCCGCAGGTATTTCCGCCGCTCTACCAGACGATGATCCGCACCGGAGAACTGACCGGCAAACTGGCCGAATGCTGCTTTGAACTGGCCCGTCAGCAAAAAGCGCAACGGCAGATTACGGTTAGCGTGAAAAAGGCGCTGCGCTATCCCGCCATTATTCTAACAATGGCCGCCCTGGTCGTTTTCGCCATGCTGCACTTTGTCCTGCCGGAATTTGCCGCCATTTACCGTAGCTTCAATACCCCGCTTCCTCTTCTGACACGCGGTATTATCGCGATAGCGCAATGGGGGCCGGCATGGGGTTGGCTCATCTTGTTCCTGACGATGCTCGTTGCTATCGCTCACCGCAGGTTAAAACAAAAACCGTCCTGGCAAGCGCAGCGGCAGCGTCTTCTGCTACGGCTTCCCGTTATGGGTCGCCTGATAAGAGGCCAGAAACTAGCGCAAATATTCACCGTACTGGCATTAACCCAAAGCGCAGGCATTCCTTTTCTTCAGGGACTGGAAAGCGCTATCGATAGTCTCGGCTGCCCTTACTGGTCACAGCGTTTAACGCAGGTACATCAGGAGATCGCCGCGGGCAATCCGGTCTGGTTGGCGCTAAAAAATACCCAGGAATTTAGTCCGCTATGCCTGCAACTGGTCAGAACGGGCGAAGCGTCCGGTTCACTCGATATCATGCTGCATAACCTTGCCCGTCACCACAGTGAATCTACGCTGGCGCTGGCCGATAATCTGGCGTCGCTGTTGGAACCGGCGTTATTGATCATCACCGGCTTAATTATCGGTACGCTGGTGGTGGCGATGTATTTGCCGATTTTTCATTTGGGAGACGCGATGAGCGGGATGGGATAA", "blast_result": {"qseqid": "NZ_AOXE01000059.1_11|2962512377", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.917, "length": 1204, "mismatch": 0, "gapopen": 1, "qstart": 1, "qend": 1204, "sstart": 169467, "send": 168265, "evalue": 0.0, "bitscore": 2217.0, "qlen": 1204, "slen": 699860, "sseq": "ATGAGCGTTAAACAGCTCTGGCGCTGGCAAGGCGTTAACGATAAAGGTCAACTGGAACAAGACGTTGTATGGGTGGACAATCGTCTGGCGCTGATCATCACCCTGCAACATCAGCGCATTATGCCGCTTCGCATCAAGCGCATAAGCGTTAACGCCGCACTGTGGAAAGAAGAGCAAAGCGCTGAAATTATTCATCAGTTGGCCACGCTCATTCATGCCGGACTGACGCTTTCTGAAGGGCTGGAACTCCTTGCGAAACAGCATCCCCACCGACAATGGCAAGCGCTGTTGCGCACGCTGGCTCACGAGCTTGAACAGGGCGTCCCTTTTTCCAGCGCATTAGTCTCCTGGCCGCAGGTATTTCCGCCGCTCTACCAGACGATGATCCGCACCGGAGAACTGACCGGCAAACTGGCCGAATGCTGCTTTGAACTGGCCCGTCAGCAAAAAGCGCAACGGCAGATTACGGTTAGCGTGAAAAAGGCGCTGCGCTATCCCGCCATTATTCTAACAATGGCCGCCCTGGTCGTTTTCGCCATGCTGCACTTTGTCCTGCCGGAATTTGCCGCCATTTACCGTAGCTTCAATACCCCGCTTCCTCTTCTGACACGCGGTATTATCGCGATAGCGCAATGGGGGCCGGCATGGGG-TTGGCTCATCTTGTTCCTGACGATGCTCGTTGCTATCGCTCACCGCAGGTTAAAACAAAAACCGTCCTGGCAAGCGCAGCGGCAGCGTCTTCTGCTACGGCTTCCCGTTATGGGTCGCCTGATAAGAGGCCAGAAACTAGCGCAAATATTCACCGTACTGGCATTAACCCAAAGCGCAGGCATTCCTTTTCTTCAGGGACTGGAAAGCGCTATCGATAGTCTCGGCTGCCCTTACTGGTCACAGCGTTTAACGCAGGTACATCAGGAGATCGCCGCGGGCAATCCGGTCTGGTTGGCGCTAAAAAATACCCAGGAATTTAGTCCGCTATGCCTGCAACTGGTCAGAACGGGCGAAGCGTCCGGTTCACTCGATATCATGCTGCATAACCTTGCCCGTCACCACAGTGAATCTACGCTGGCGCTGGCCGATAATCTGGCGTCGCTGTTGGAACCGGCGTTATTGATCATCACCGGCTTAATTATCGGTACGCTGGTGGTGGCGATGTATTTGCCGATTTTTCATTTGGGAGACGCGATGAGCGGGATGGGATAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000059.1_11", "allele": 2962512377, "is_match": true, "allele_name": 1154766063, "is_perfect": false, "has_perfect_match": false, "start_idx": 168264.0, "end_idx": 169466.0, "needs_revcomp": true, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000059.1_79": {"name": 1341416065, "seq": "ATGGATTTCAACTTAAATGACGAACAGGAGCTGTTTGTCGCCGGTATTCGCGAACTGATGGCCAGTGAGAACTGGGAAGCTTATTTTGCCGAGTGCGATCGTGACAGCGTCTACCCTGAGCGTTTTGTAAAAGCGCTGGCGGATATGGGTATTGATAGCCTGCTGATCCCGGAAGAACACGGCGGTCTGGAAGCGGGTTTTGTTACCGTCGCCGCCGTCTGGATGGAACTGGGACGTCTTGGCGCGCCAACTTACGTGTTGTACCAATTGCCGGGAGGTTTTAACACTTTCCTGCGTGAAGGGACTCAGGAGCAAATTGATAAAATCATGGCGTTCCGGGGCACCGGTAAGCAGATGTGGAACTCTGCTATCACCGAACCGGGAGCGGGATCGGATGTTGGTAGTCTGAAAACCACTTATACACGCAAAAATGGTAAGGTTTATCTCAATGGCAGTAAGTGCTTTATCACCAGTAGCGCCTATACCCCGTACATCGTGGTCATGGCGAGAGACGGTGCATCGCCGGATAAACCGGTTTACACCGAGTGGTTTGTGGACATGAGCAAAGCGGGTATCAAGGTCAACAAACTGGAGAAACTCGGTCTGCGCATGGATAGCTGCTGTGAAATCACCTTTGACGACGTTGAACTGGACGAGAAAGACATGTTCGGTCGGGAAGGTAACGGCTTCAACCGCGTGAAAGAAGAGTTTGACCATGAACGCTTCCTCGTCGCGCTGACCAACTACGGTACCGCAATGTGCACTTTTGAAGACGCTGCGCGTTACGCTAATCAGCGCGTGCAGTTTGGTGAAGCTATTGGCCGTTTCCAGCTGATTCAGGAGAAGTTTGCGCATATGGCGATCAAACTGAACTCCATGAAAAATATGCTGCTGGAAGCCGCGTGGAAAGCAGATAACGGCACTATTACCTCCGGCGACGCGGCCATGTGCAAATACTTCTGCGCCAACGCCGCGTTTGAAGTGGTAGACACCGCCATGCAGGTACTGGGAGGTGTTGGTATCGCGGGCAACCACCGCATCACGCGTTTCTGGCGTGACCTGCGCGTTGACCGTGTTTCTGGTGGTTCTGACGAAATGCAGATCCTGACGTTGGGTCGTGCGGTACTCAAGCAATACCGCTAA", "blast_result": {"qseqid": "NZ_AOXE01000059.1_79|2405867870", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.3, "length": 1143, "mismatch": 8, "gapopen": 0, "qstart": 1, "qend": 1143, "sstart": 86459, "send": 85317, "evalue": 0.0, "bitscore": 2067.0, "qlen": 1143, "slen": 699860, "sseq": "ATGGATTTCAACTTAAATGACGAACAGGAGCTGTTTGTCGCCGGTATTCGCGAACTGATGGCCAGTGAGAACTGGGAAGCTTATTTTGCCGAGTGCGATCGTGACAGCGTCTACCCTGAGCGTTTTGTAAAAGCGCTGGCGGATATGGGTATTGATAGCCTGCTGATCCCGGAAGAACACGGCGGTCTGGAAGCGGGTTTTGTTACCGTCGCCGCCGTCTGGATGGAACTGGGACGTCTTGGCGCGCCAACTTACGTGTTGTACCAATTGCCGGGAGGTTTTAACACTTTCCTGCGTGAAGGGACTCAGGAGCAAATTGATAAAATCATGGCGTTCCGGGGCACCGGTAAGCAGATGTGGAACTCTGCTATCACCGAACCGGGAGCGGGATCGGATGTTGGTAGTCTGAAAACCACTTATACACGCAAAAATGGTAAGGTTTATCTCAATGGCAGTAAGTGCTTTATCACCAGTAGCGCCTATACCCCGTACATCGTGGTCATGGCGAGAGACGGTGCATCGCCGGATAAACCGGTTTACACCGAGTGGTTTGTGGACATGAGCAAAGCGGGTATCAAGGTCAACAAACTGGAGAAACTCGGTCTGCGCATGGATAGCTGCTGTGAAATCACCTTTGACGACGTTGAACTGGACGAGAAAGACATGTTCGGTCGGGAAGGTAACGGCTTCAACCGCGTGAAAGAAGAGTTTGACCATGAACGCTTCCTCGTCGCGCTGACCAACTACGGTACCGCAATGTGCACTTTTGAAGACGCTGCGCGTTACGCTAATCAGCGCGTGCAGTTTGGTGAAGCTATTGGCCGTTTCCAGCTGATTCAGGAGAAGTTTGCGCATATGGCGATCAAACTGAACTCCATGAAAAATATGCTGCTGGAAGCCGCGTGGAAAGCAGATAACGGCACTATTACCTCCGGCGACGCGGCCATGTGCAAATACTTCTGCGCCAACGCCGCGTTTGAAGTGGTAGACACCGCCATGCAGGTACTGGGAGGTGTTGGTATCGCGGGCAACCACCGCATCACGCGTTTCTGGCGTGACCTGCGCGTTGACCGTGTTTCTGGTGGTTCTGACGAAATGCAGATCCTGACGTTGGGTCGTGCGGTACTCAAGCAATACCGCTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000059.1_79", "allele": 2405867870, "is_match": true, "allele_name": 1341416065, "is_perfect": false, "has_perfect_match": false, "start_idx": 85316.0, "end_idx": 86458.0, "needs_revcomp": true, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000052.1_78": {"name": 2197498164, "seq": "ATGCATAACCAGGCTCCGATTCAACGTAGAAAATCGACACGTATTTACGTTGGGAATGTGCCGATTGGCGATGGCGCCCCTATCGCCGTCCAGTCGATGACTAACACGCGTACCACTGACGTGGAAGCGACGGTTAATCAGATCAAAGCGCTGGAGCGCGTTGGCGCAGATATTGTTCGTGTTTCTGTACCGACCATGGACGCCGCCGAAGCGTTCAAGCTTATCAAACAGCAGGTTAGCGTCCCGCTGGTTGCCGATATTCACTTCGACTACCGCATTGCGCTGAAAGTAGCGGAATACGGCGTTGACTGCTTGCGTATTAACCCCGGCAATATCGGTAACGAAGAACGCATTCGCATGGTGGTGGACTGCGCGCGCGACAAAAACATCCCTATCCGTATCGGCGTAAATGCCGGATCGCTGGAAAAAGATCTGCAGGAAAAATACGGAGAGCCGACGCCGCAGGCGCTGCTGGAATCAGCCATGCGCCATGTCGATCATCTCGATCGTCTCAACTTTGATCAGTTCAAAGTGAGCGTAAAAGCGTCCGATGTATTCCTTGCCGTTGAGTCTTATCGTTTGTTGGCTAAACAGATCGATCAGCCGCTGCATCTGGGGATCACCGAAGCGGGCGGCGCGCGTAGCGGGGCGGTTAAGTCGGCGATCGGTTTAGGTCTGCTGTTATCGGAAGGCATCGGCGACACGCTGCGCGTATCGTTGGCGGCCGACCCGGTGGAAGAGATCAAAGTCGGTTTCGATATCCTGAAGTCGCTGCGTATTCGCGCGCGCGGCATCAATTTCATCGCCTGCCCGACCTGTTCTCGTCAGGAGTTCGACGTTATCGGCACGGTGAACGCGCTGGAGCAGCGTCTGGAAGATATCATCACCCCGATGGACGTCTCGATCATCGGTTGTGTGGTGAACGGGCCGGGCGAAGCGCTGGTATCGACGCTGGGCGTGACGGGCGGCAATAAGAAAAGCGGCCTGTATGAAGACGGCGTGCGTAAGGACAGACTCGATAACGACGATATGATCGCGCAGCTTGAATCCCGTATTCGCGCGAAAGTAAGTCAACTTGATGAAGCGCGTCGGATTGACGTGCTGCAGGTTGAAAAATAA", "blast_result": {"qseqid": "NZ_AOXE01000052.1_78|67862347", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 98.57, "length": 1119, "mismatch": 15, "gapopen": 1, "qstart": 1, "qend": 1118, "sstart": 383225, "send": 384343, "evalue": 0.0, "bitscore": 1977.0, "qlen": 1118, "slen": 699860, "sseq": "ATGCATAACCAGGCTCCGATTCAACGTAGAAAATCGACACGTATTTACGTTGGGAATGTGCCGATTGGCGATGGCGCCCCTATCGCCGTCCAGTCGATGACTAACACGCGTACCACTGACGTGGAAGCGACGGTTAATCAGATCAAAGCGCTGGAGCGCGTTGGCGCAGATATTGTTCGTGTTTCTGTACCGACCATGGACGCCGCCGAAGCGTTCAAGCTTATCAAACAGCAGGTTAGCGTCCCGCTGGTTGCCGATATTCACTTCGACTACCGCATTGCGCTGAAAGTAGCGGAATACGGCGTTGACTGCTTGCGTATTAACCCCGGCAATATCGGTAACGAAGAACGCATTCGCATGGTGGTGGACTGCGCGCGCGACAAAAACATCCCTATCCGTATCGGCGTAAATGCCGGATCGCTGGAAAAAGATCTGCAGGAAAAATACGGAGAGCCGACGCCGCAGGCGCTGCTGGAATCAGCCATGCGCCATGTCGATCATCTCGATCGTCTCAACTTTGATCAGTTCAAAGTGAGCGTAAAAGCGTCCGATGTATTCCTTGCCGTTGAGTCTTATCGTTTGTTGGCTAAACAGATCGATCAGCCGCTGCATCTGGGGATCACCGAAGCGGGCGGCGCGCGTAGCGGGGCGGTTAAGTCGGCGATCGGTTTAGGTCTGCTGTTATCGGAAGGCATCGGCGACACGCTGCGCGTATCGTTGGCGGCCGACCCGGTGGAAGAGATCAAAGTCGGTTTCGATATCCTGAAGTCGCTGCGTATTCGCGCGCGCGGCATCAATTTCATCGCCTGCCCGACCTGTTCTCGTCAGGAGTTCGACGTTATCGGCACGGTGAACGCGCTGGAGCAGCGTCTGGAAGATATCATCACCCCGATGGACGTCTCGATCATCGGTTGTGTGGTGAACGGGCCGGGCGAAGCGCTGGTATCGACGCTGGGCGTGACGGGCGGCAATAAGAAAAGCGGCCTGTATGAAGACGGCGTGCGTAAGGACAGACTCGATAACGACGATATGATCGCGCAGCTTGAATCCCGTATTCGCGCGAAAGTAAGTCAACTTGATGAAGCGCGTCGGATTGACGTGCTGCAGGTTGAAAAATAA", "coverage": 1.0008944543828264, "is_trunc": false, "marker": "NZ_AOXE01000052.1_78", "allele": 67862347, "is_match": true, "allele_name": 2197498164, "is_perfect": false, "has_perfect_match": false, "start_idx": 383224.0, "end_idx": 384342.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000059.1_38": {"name": 4065472468, "seq": "GTGAAACTGGATGAAATCGCTCGGCTGGCCGGTGTCTCGCGCACAACTGCAAGCTACGTTATAAACGGTAAAGCAAAGCAATACCGCGTGAGCGACAAAACCGTAGAAAAAGTCATGGCGGTAGTGCGTGAGCACAATTACCATCCTAACGCTGTGGCTGCCGGGCTGCGTGCTGGACGCACACGTTCCATTGGTCTGGTGATCCCGGACCTTGAAAACACGAGCTACACCCGTATCGCAAACTATCTTGAGCGCCAGGCACGCCAGCGTGGCTACCAACTGCTGATCGCCTGTTCTGAAGATCAGCCGGATAACGAAATGCGCTGCATTGAGCACCTTTTGCAACGCCAGGTGGATGCAATCATTGTTTCAACTTCGTTACCGCCGGAGCATCCCTTCTATCAGCGCTGGGCCAACGATCCGTTCCCCATCGTCGCGCTCGACCGCGCGCTGGATCGCGAACATTTCACCAGCGTGGTCGGCGCCGATCAGGATGATGCCGAGATGTTGGCGGAAGAGCTGCGTAAATTCCCGGCGGAAACGGTGCTTTATTTGGGCGCGCTGCCGGAGTTGTCCGTCAGTTTCCTGCGCGAGCAGGGGTTCCGCACCGCATGGAAAGACGATCCGCGGGAGGTGAATTTCTTATATGCCAACAGCTATGAGCGCGAAGCCGCCGCGCAGCTGTTTGAGAAATGGCTGGAAACGCATCCTATGCCGCAGGCGCTCTTTACGACATCATTCGCGCTATTACAGGGCGTGATGGACGTTACGCTGCGGCGCGATGGAAAACTGCCTTCGGATTTAGCGATTGCGACCTTTGGCGATCATGAGCTGCTGGATTTTCTGCAATGCCCGGTACTGGCGGTGGCGCAGCGTCATCGTGATGTCGCGGAACGCGTGCTGGAGATTGTGCTGGCAAGTCTTGATGAACCGCGTAAACCGAAACCCGGCTTAACGCGTATTCGGCGAAACCTGTATCGTCGCGGCATTCTGAGCCGTAGCTAA", "blast_result": {"qseqid": "NZ_AOXE01000059.1_38|1215119632", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.90100000000001, "length": 1006, "mismatch": 0, "gapopen": 1, "qstart": 1, "qend": 1006, "sstart": 139743, "send": 140747, "evalue": 0.0, "bitscore": 1851.0, "qlen": 1006, "slen": 699860, "sseq": "GTGAAACTGGATGAAATCGCTCGGCTGGCCGGTGTCTCGCGCACAACTGCAAGCTACGTTATAAACGGTAAAGCAAAGCAATACCGCGTGAGCGACAAAACCGTAGAAAAAGT-CATGGCGGTAGTGCGTGAGCACAATTACCATCCTAACGCTGTGGCTGCCGGGCTGCGTGCTGGACGCACACGTTCCATTGGTCTGGTGATCCCGGACCTTGAAAACACGAGCTACACCCGTATCGCAAACTATCTTGAGCGCCAGGCACGCCAGCGTGGCTACCAACTGCTGATCGCCTGTTCTGAAGATCAGCCGGATAACGAAATGCGCTGCATTGAGCACCTTTTGCAACGCCAGGTGGATGCAATCATTGTTTCAACTTCGTTACCGCCGGAGCATCCCTTCTATCAGCGCTGGGCCAACGATCCGTTCCCCATCGTCGCGCTCGACCGCGCGCTGGATCGCGAACATTTCACCAGCGTGGTCGGCGCCGATCAGGATGATGCCGAGATGTTGGCGGAAGAGCTGCGTAAATTCCCGGCGGAAACGGTGCTTTATTTGGGCGCGCTGCCGGAGTTGTCCGTCAGTTTCCTGCGCGAGCAGGGGTTCCGCACCGCATGGAAAGACGATCCGCGGGAGGTGAATTTCTTATATGCCAACAGCTATGAGCGCGAAGCCGCCGCGCAGCTGTTTGAGAAATGGCTGGAAACGCATCCTATGCCGCAGGCGCTCTTTACGACATCATTCGCGCTATTACAGGGCGTGATGGACGTTACGCTGCGGCGCGATGGAAAACTGCCTTCGGATTTAGCGATTGCGACCTTTGGCGATCATGAGCTGCTGGATTTTCTGCAATGCCCGGTACTGGCGGTGGCGCAGCGTCATCGTGATGTCGCGGAACGCGTGCTGGAGATTGTGCTGGCAAGTCTTGATGAACCGCGTAAACCGAAACCCGGCTTAACGCGTATTCGGCGAAACCTGTATCGTCGCGGCATTCTGAGCCGTAGCTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000059.1_38", "allele": 1215119632, "is_match": true, "allele_name": 4065472468, "is_perfect": false, "has_perfect_match": false, "start_idx": 139742.0, "end_idx": 140746.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000033.1_2": {"name": 2161147266, "seq": "ATGATTAAACTTTCGAATATTACCAAAGTGTTCCAGCAGGGGGCGCGCACCATTCAGGCGCTGAACAATGTCAGCCTGCATGTCCCTGCCGGACAAATTTACGGCGTCATCGGCGCCTCCGGCGCCGGTAAAAGTACGCTCATTCGCTGCGTAAACTTACTTGAACGTCCTACTGAAGGAAGCGTAATGGTAGGCGGTCAGGAGCTGACAACGCTTTCAGAGTCCGGGTTGACCAAAGCTCGCCGTCAAATCGGCATGATTTTCCAACATTTTAACCTGCTCTCTTCCCGTACCGTGTTTGGCAACGTCGCGTTGCCGCTGGAACTGGATAACACACCAAAGGAAGAGATCAAACGCCGTGTCACAGAGCTGCTGGATTTAGTCGGTCTTGGCGACAAGCACGACAGCTATCCGGCAAATCTTTCCGGCGGTCAGAAACAGCGTGTCGCGATTGCCCGCGCGTTAGCCAGTAATCCAAAAGTGTTGCTGTGCGATGAAGCCACCAGCGCGCTTGATCCCGCGACGACCCGTTCGATTCTGGAATTGCTGAAAGATATCAACCGTCGTCTGGGGTTGACGATTCTGCTTATCACTCATGAAATGGATGTCGTAAAACGTATCTGCGACTGCGTTGCCGTCATCAGTAATGGCGAGCTTATTGAGCAGGATACGGTCAGCGAAGTCTTCTCGCATCCTAAAACGCCGCTGGCGCAGAAGTTTATTCAGTCCACTCTGCATCTGGACATTCCGGAAGATTACCAGGCGCGTTTGAAAGCGTCGCCGGAAACTGACAGCGTGCCGATGCTGCGCATGGAGTTCACCGGACAGTCTGTGGATGCCCCGCTGCTTTCTGAAACCGCGCGTCGTTTCAACGTGAACAATAATATTATCAGCGCACAGATGGATTACGCGGGCGGTGTGAAGTTCGGCATTATGCTAACGGAAATGCACGGCACACAAGAAGAGACGCAAGCCGCAATTGCCTGGCTGCAGGATCACCATGTGAAAGTAGAGGTACTGGGTTATGTCTGA", "blast_result": {"qseqid": "NZ_AOXE01000033.1_2|2613594907", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 98.64299999999999, "length": 1032, "mismatch": 14, "gapopen": 0, "qstart": 1, "qend": 1032, "sstart": 286343, "send": 285312, "evalue": 0.0, "bitscore": 1829.0, "qlen": 1032, "slen": 699860, "sseq": "ATGATTAAACTTTCGAATATTACCAAAGTGTTCCAGCAGGGGGCGCGCACCATTCAGGCGCTGAACAATGTCAGCCTGCATGTCCCTGCCGGACAAATTTACGGCGTCATCGGCGCCTCCGGCGCCGGTAAAAGTACGCTCATTCGCTGCGTAAACTTACTTGAACGTCCTACTGAAGGAAGCGTAATGGTAGGCGGTCAGGAGCTGACAACGCTTTCAGAGTCCGGGTTGACCAAAGCTCGCCGTCAAATCGGCATGATTTTCCAACATTTTAACCTGCTCTCTTCCCGTACCGTGTTTGGCAACGTCGCGTTGCCGCTGGAACTGGATAACACACCAAAGGAAGAGATCAAACGCCGTGTCACAGAGCTGCTGGATTTAGTCGGTCTTGGCGACAAGCACGACAGCTATCCGGCAAATCTTTCCGGCGGTCAGAAACAGCGTGTCGCGATTGCCCGCGCGTTAGCCAGTAATCCAAAAGTGTTGCTGTGCGATGAAGCCACCAGCGCGCTTGATCCCGCGACGACCCGTTCGATTCTGGAATTGCTGAAAGATATCAACCGTCGTCTGGGGTTGACGATTCTGCTTATCACTCATGAAATGGATGTCGTAAAACGTATCTGCGACTGCGTTGCCGTCATCAGTAATGGCGAGCTTATTGAGCAGGATACGGTCAGCGAAGTCTTCTCGCATCCTAAAACGCCGCTGGCGCAGAAGTTTATTCAGTCCACTCTGCATCTGGACATTCCGGAAGATTACCAGGCGCGTTTGAAAGCGTCGCCGGAAACTGACAGCGTGCCGATGCTGCGCATGGAGTTCACCGGACAGTCTGTGGATGCCCCGCTGCTTTCTGAAACCGCGCGTCGTTTCAACGTGAACAATAATATTATCAGCGCACAGATGGATTACGCGGGCGGTGTGAAGTTCGGCATTATGCTAACGGAAATGCACGGCACACAAGAAGAGACGCAAGCCGCAATTGCCTGGCTGCAGGATCACCATGTGAAAGTAGAGGTACTGGGTTATGTCTGA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000033.1_2", "allele": 2613594907, "is_match": true, "allele_name": 2161147266, "is_perfect": false, "has_perfect_match": false, "start_idx": 285311.0, "end_idx": 286342.0, "needs_revcomp": true, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000059.1_49": {"name": 3076491138, "seq": "GTGTTAAAAAAATATCTTCCGCTTTTACTCCTGTGCGCGGCGCCTGCTTTCGCCAAACCCGTTCTCACCGTCTATACCTACGACTCGTTCGCCGCCGACTGGGGGCCAGGCCCGGCGGTGAAAAAAGCGTTTGAAGCCGATTGCAACTGCGAGCTGAAACTGGTGGCGCTGGAGGATGGCGTTTCGCTGCTCAACCGCCTGCGGATGGAGGGGAAGAACAGCAAAGCCGATGTGGTGTTGGGGCTGGACAATAATCTGCTGGAGGCGGCCACGCAAACTAAACTCTTTGCCAAAAGCGGCGTGGCGAATGAGGCGGTCAAGGTGCCCGGCGGCTGGAAAAACGACACATTTGTGCCGTTCGATTACGGCTATTTCGCCTTTGTCTACGATAAAAGCAAGCTGAAAAATCCGCCGAAAAGCCTGAAAGAACTGGTCGAGAGCGATCAAAAATGGCGGGTGATTTATCAGGATCCGCGTACCAGTACGCCAGGGCTGGGGCTGTTACTGTGGATGCGCAAAGTTTATGGCGATAACGCGCCGCAGGCCTGGCAAAAACTGGCGGCCAAAACGGTGACGGTGACGAAAGGCTGGAGCGAGGCCTACGGTTTATTTCTGAAAGGTGAAAGCGATTTGGTGCTCAGTTACACCACCTCTCCGGCGTATCACATTATTGAAGAGAAGAAGGACAATTACGCCGCCGCGAACTTCAGCGAAGGCCATTACTTACAGGTAGAAGTCGCGGCGCGTACCGTCGCCAGTAAGCAGCCGGAACTGGCGGAGAAATTCCTCAAATTTATGGTTTCTCCGGCGTTTCAGAACGCCATACCCACCGGCAACTGGATGTACCCGGTAGCGGACGTCGCCTTACCCGCAGGGTTTGAATCATTGGCCAAACCCGCCACAACGCTGGAATTCACGCCGCAACAAGTGGCAGCACAACGCCAGGCATGGATTAGCGAATGGCAACGCGCCGTCAGCCGTTAA", "blast_result": {"qseqid": "NZ_AOXE01000059.1_49|3076491138", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 100.0, "length": 984, "mismatch": 0, "gapopen": 0, "qstart": 1, "qend": 984, "sstart": 128076, "send": 127093, "evalue": 0.0, "bitscore": 1818.0, "qlen": 984, "slen": 699860, "sseq": "GTGTTAAAAAAATATCTTCCGCTTTTACTCCTGTGCGCGGCGCCTGCTTTCGCCAAACCCGTTCTCACCGTCTATACCTACGACTCGTTCGCCGCCGACTGGGGGCCAGGCCCGGCGGTGAAAAAAGCGTTTGAAGCCGATTGCAACTGCGAGCTGAAACTGGTGGCGCTGGAGGATGGCGTTTCGCTGCTCAACCGCCTGCGGATGGAGGGGAAGAACAGCAAAGCCGATGTGGTGTTGGGGCTGGACAATAATCTGCTGGAGGCGGCCACGCAAACTAAACTCTTTGCCAAAAGCGGCGTGGCGAATGAGGCGGTCAAGGTGCCCGGCGGCTGGAAAAACGACACATTTGTGCCGTTCGATTACGGCTATTTCGCCTTTGTCTACGATAAAAGCAAGCTGAAAAATCCGCCGAAAAGCCTGAAAGAACTGGTCGAGAGCGATCAAAAATGGCGGGTGATTTATCAGGATCCGCGTACCAGTACGCCAGGGCTGGGGCTGTTACTGTGGATGCGCAAAGTTTATGGCGATAACGCGCCGCAGGCCTGGCAAAAACTGGCGGCCAAAACGGTGACGGTGACGAAAGGCTGGAGCGAGGCCTACGGTTTATTTCTGAAAGGTGAAAGCGATTTGGTGCTCAGTTACACCACCTCTCCGGCGTATCACATTATTGAAGAGAAGAAGGACAATTACGCCGCCGCGAACTTCAGCGAAGGCCATTACTTACAGGTAGAAGTCGCGGCGCGTACCGTCGCCAGTAAGCAGCCGGAACTGGCGGAGAAATTCCTCAAATTTATGGTTTCTCCGGCGTTTCAGAACGCCATACCCACCGGCAACTGGATGTACCCGGTAGCGGACGTCGCCTTACCCGCAGGGTTTGAATCATTGGCCAAACCCGCCACAACGCTGGAATTCACGCCGCAACAAGTGGCAGCACAACGCCAGGCATGGATTAGCGAATGGCAACGCGCCGTCAGCCGTTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000059.1_49", "allele": 3076491138, "is_match": true, "allele_name": 3076491138, "is_perfect": true, "has_perfect_match": true, "start_idx": 127092.0, "end_idx": 128075.0, "needs_revcomp": true, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000033.1_17": {"name": 3779563470, "seq": "ATGAGTCTGAATTTCCTTGATTTTGAACAGCCGATAGCAGAGCTGGAAGCGAAAATCGATTCTCTGACTGCGGTAAGCCGCCAGGATGAGAAACTGGATATTAATATCGATGAAGAAGTCCATCGCCTGCGCGAAAAAAGCGTAGAACTGACGCGCAAAATCTTCGCCGATCTCGGCGCATGGCAGGTAGCCCAACTGGCGCGCCATCCGCAGCGTCCGTACACCTTGGATTATGTCCGTCTGGCGTTTGATGAGTTTGATGAGCTGGCGGGCGATCGCGCCTATGCTGATGACAAAGCCATCGTCGGCGGTATCGCGCGTCTGGAAGGGCGACCGGTGATGATCATTGGTCATCAGAAAGGTCGTGAAACCAAAGAAAAAATTCGTCGTAACTTTGGCATGCCAGCGCCGGAAGGCTACCGCAAAGCGCTGCGCCTGATGGAAATGGCTGAACGCTTCAACATGCCGATTATCACCTTCATCGACACCCCGGGCGCTTACCCTGGCGTGGGCGCGGAAGAGCGTGGTCAGTCTGAAGCTATCGCCCGCAACCTGCGTGAGATGTCTCGTCTGAACGTACCGGTCATCTGCACCGTGATTGGCGAAGGCGGCTCCGGCGGCGCATTGGCGATTGGCGTGGGTGATAAAGTGAATATGCTGCAATACAGCACCTATTCCGTTATCTCCCCGGAAGGTTGCGCCTCTATTTTGTGGAAGAGCGCCGACAAAGCGCCATTGGCTGCTGAAGCGATGGGCATCATCGCGCCGCGTCTGAAAGAGCTGAAGCTAATCGATTCCATCATTCCGGAGCCGCTGGGCGGCGCGCACCGTAATCCGGAAGCGATGGCGGCGTCGCTAAAAGCGCAGCTGCTGGAAGATTTAGCCGATCTCGATGTGTTAAGCACCGATGATTTAAAAAACCGTCGTTACCAGCGTTTGATGAGCTACGGTTACGCCTAA", "blast_result": {"qseqid": "NZ_AOXE01000033.1_17|864535644", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.896, "length": 960, "mismatch": 1, "gapopen": 0, "qstart": 1, "qend": 960, "sstart": 269916, "send": 270875, "evalue": 0.0, "bitscore": 1768.0, "qlen": 960, "slen": 699860, "sseq": "ATGAGTCTGAATTTCCTTGATTTTGAACAGCCGATAGCAGAGCTGGAAGCGAAAATCGATTCTCTGACTGCGGTAAGCCGCCAGGATGAGAAACTGGATATTAATATCGATGAAGAAGTCCATCGCCTGCGCGAAAAAAGCGTAGAACTGACGCGCAAAATCTTCGCCGATCTCGGCGCATGGCAGGTAGCCCAACTGGCGCGCCATCCGCAGCGTCCGTACACCTTGGATTATGTCCGTCTGGCGTTTGATGAGTTTGATGAGCTGGCGGGCGATCGCGCCTATGCTGATGACAAAGCCATCGTCGGCGGTATCGCGCGTCTGGAAGGGCGACCGGTGATGATCATTGGTCATCAGAAAGGTCGTGAAACCAAAGAAAAAATTCGTCGTAACTTTGGCATGCCAGCGCCGGAAGGCTACCGCAAAGCGCTGCGCCTGATGGAAATGGCTGAACGCTTCAACATGCCGATTATCACCTTCATCGACACCCCGGGCGCTTACCCTGGCGTGGGCGCGGAAGAGCGTGGTCAGTCTGAAGCTATCGCCCGCAACCTGCGTGAGATGTCTCGTCTGAACGTACCGGTCATCTGCACCGTGATTGGCGAAGGCGGCTCCGGCGGCGCATTGGCGATTGGCGTGGGTGATAAAGTGAATATGCTGCAATACAGCACCTATTCCGTTATCTCCCCGGAAGGTTGCGCCTCTATTTTGTGGAAGAGCGCCGACAAAGCGCCATTGGCTGCTGAAGCGATGGGCATCATCGCGCCGCGTCTGAAAGAGCTGAAGCTAATCGATTCCATCATTCCGGAGCCGCTGGGCGGCGCGCACCGTAATCCGGAAGCGATGGCGGCGTCGCTAAAAGCGCAGCTGCTGGAAGATTTAGCCGATCTCGATGTGTTAAGCACCGATGATTTAAAAAACCGTCGTTACCAGCGTTTGATGAGCTACGGTTACGCCTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000033.1_17", "allele": 864535644, "is_match": true, "allele_name": 3779563470, "is_perfect": false, "has_perfect_match": false, "start_idx": 269915.0, "end_idx": 270874.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000083.1_47": {"name": 2372254687, "seq": "ATGCGTAGCGCGCAGGTATACCGCTGGCAGATCCCCATGGACGCGGGGGTGGTTCTGCGCGACAGGCGGTTAAAAACTCGCGACGGGCTGTATGTTTGTCTGCGTGACGGCGAGCGTGAAGGGTGGGGAGAGATCTCCCCGCTGCCGGGCTTCAGTCAGGAAACGTGGGAAGAGGCGCAGACGGCGCTCCTGACATGGGTGAATGACTGGCTTCAGGGGAGCGAGGGATTACCGGAGATGCCTTCGGTCGCGTTTGGCGCAAGCTGCGCGCTGGCGGAACTGACTGGCGTCTTGCCGGAGGCGGCGGACTATCGCGCCGCGCCGTTATGCACTGGCGATCCTGACGATTTGGTACTGCGGCTTGCCGATATGCCCGGCGAGAAAATCGCTAAGGTCAAAGTGGGTCTCTATGAAGCGGTACGCGACGGCATGGTGGTTAATTTGCTGCTGGAGGCGATCCCGGATCTGCATCTGCGTCTGGATGCGAATCGCGCCTGGACGCCGCTAAAAGCCCAACAGTTCGCAAAGTATGTTAATCCGGATTACCGCGCTCGTATCGCCTTTCTCGAAGAACCGTGTAAGACGCGGGATGATTCCCGCGCCTTTGCCCGTGAAACCGGCATCGCGATTGCCTGGGACGAAAGTCTGCGCGAAGCGGATTTCACCTTTGAAGCCGAAGAGGGCGTCAGGGCTGTGGTTATCAAACCTACGCTGACCGGATCGCTTGATAAAGTGCGTGAGCAAGTCGCTGCCGCCCATGCGTTGGGACTGACGGCGGTCATCAGCTCTTCGATCGAGTCCAGCCTCGGCCTGACGCAACTGGCGCGGATTGCCGCCTGGTTGACGCCGGGAACGCTGCCCGGACTGGATACCTTGCATCTGATGCAGGCGCAACAGGTTCGCCCCTGGCCTGGTAACGCGTTGCCTTGTCTGAAGCGTGATGAGCTGGAACGACTGTTATGA", "blast_result": {"qseqid": "NZ_AOXE01000083.1_47|48430411", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.68799999999999, "length": 963, "mismatch": 3, "gapopen": 0, "qstart": 1, "qend": 963, "sstart": 633122, "send": 634084, "evalue": 0.0, "bitscore": 1762.0, "qlen": 963, "slen": 699860, "sseq": "ATGCGTAGCGCGCAGGTATACCGCTGGCAGATCCCCATGGACGCGGGGGTGGTTCTGCGCGACAGGCGGTTAAAAACTCGCGACGGGCTGTATGTTTGTCTGCGTGACGGCGAGCGTGAAGGGTGGGGAGAGATCTCCCCGCTGCCGGGCTTCAGTCAGGAAACGTGGGAAGAGGCGCAGACGGCGCTCCTGACATGGGTGAATGACTGGCTTCAGGGGAGCGAGGGATTACCGGAGATGCCTTCGGTCGCGTTTGGCGCAAGCTGCGCGCTGGCGGAACTGACTGGCGTCTTGCCGGAGGCGGCGGACTATCGCGCCGCGCCGTTATGCACTGGCGATCCTGACGATTTGGTACTGCGGCTTGCCGATATGCCCGGCGAGAAAATCGCTAAGGTCAAAGTGGGTCTCTATGAAGCGGTACGCGACGGCATGGTGGTTAATTTGCTGCTGGAGGCGATCCCGGATCTGCATCTGCGTCTGGATGCGAATCGCGCCTGGACGCCGCTAAAAGCCCAACAGTTCGCAAAGTATGTTAATCCGGATTACCGCGCTCGTATCGCCTTTCTCGAAGAACCGTGTAAGACGCGGGATGATTCCCGCGCCTTTGCCCGTGAAACCGGCATCGCGATTGCCTGGGACGAAAGTCTGCGCGAAGCGGATTTCACCTTTGAAGCCGAAGAGGGCGTCAGGGCTGTGGTTATCAAACCTACGCTGACCGGATCGCTTGATAAAGTGCGTGAGCAAGTCGCTGCCGCCCATGCGTTGGGACTGACGGCGGTCATCAGCTCTTCGATCGAGTCCAGCCTCGGCCTGACGCAACTGGCGCGGATTGCCGCCTGGTTGACGCCGGGAACGCTGCCCGGACTGGATACCTTGCATCTGATGCAGGCGCAACAGGTTCGCCCCTGGCCTGGTAACGCGTTGCCTTGTCTGAAGCGTGATGAGCTGGAACGACTGTTATGA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000083.1_47", "allele": 48430411, "is_match": true, "allele_name": 2372254687, "is_perfect": false, "has_perfect_match": false, "start_idx": 633121.0, "end_idx": 634083.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000052.1_43": {"name": 926214622, "seq": "ATGTTCACGGGAAGTATTGTCGCGCTTGTTACGCCGATGGATGAGAAAGGTAACGTCAGTAGGTCTTGCCTGAAAAAACTCATTGATTATCATGTCGCCAACGGTACCTCGGCGATTGTTTCGGTTGGCACCACCGGCGAGTCTGCCACGCTAAGCCATGATGAACATGGCGATGTCGTGATGATGACGCTGGAACTGGCTGACGGACGTATTCCGGTTATCGCTGGCACGGGCGCAAACGCGACCGCGGAAGCGATTAGCCTGACGCAGCGTTTTAACGATAGCGGCATTGTTGGCTGCCTGACGGTAACGCCGTACTACAATCGCCCCACGCAGGAAGGTTTGTTCCAGCATTTCAAAGCCATCGCGGAACACACTGACTTGCCGCAAATTCTGTATAATGTGCCGTCCCGTACCGGTTGCGACATGTTGCCGGAAACCGTGGGTCGTCTGGCGGAAATAAAAAATATTATCGCTATCAAAGAGGCGACAGGGAACTTAACCCGCGTTCACCAGATCAAAGAGCTGGTTTCAGACGATTTTATTCTGCTTAGCGGCGATGACGCGTCCGCGCTGGACTTTATGCAACTGGGTGGTCATGGCGTGATTTCCGTTACTGCTAACGTAGCGGCGCGCGATATGGCTGACATGTGCAAACTGGCGGCGGAAGGGCAATTTGCCGAGGCGCGCGCTATCAACCAGCGTCTGATGCCGTTACACAACAAACTATTTGTCGAACCCAATCCTATCCCGGTGAAATGGGCATGTAAGGCATTGGGTCTTGTGGCGACCGACACGCTGCGCCTGCCAATGACGCCTATCACCGACCATGGTCGTGACATCGTCAAAGCAGCGCTTCAGCATGCTGGCCTGCTGTAA", "blast_result": {"qseqid": "NZ_AOXE01000052.1_43|4288005734", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.88600000000001, "length": 879, "mismatch": 1, "gapopen": 0, "qstart": 1, "qend": 879, "sstart": 439617, "send": 440495, "evalue": 0.0, "bitscore": 1618.0, "qlen": 879, "slen": 699860, "sseq": "ATGTTCACGGGAAGTATTGTCGCGCTTGTTACGCCGATGGATGAGAAAGGTAACGTCAGTAGGTCTTGCCTGAAAAAACTCATTGATTATCATGTCGCCAACGGTACCTCGGCGATTGTTTCGGTTGGCACCACCGGCGAGTCTGCCACGCTAAGCCATGATGAACATGGCGATGTCGTGATGATGACGCTGGAACTGGCTGACGGACGTATTCCGGTTATCGCTGGCACGGGCGCAAACGCGACCGCGGAAGCGATTAGCCTGACGCAGCGTTTTAACGATAGCGGCATTGTTGGCTGCCTGACGGTAACGCCGTACTACAATCGCCCCACGCAGGAAGGTTTGTTCCAGCATTTCAAAGCCATCGCGGAACACACTGACTTGCCGCAAATTCTGTATAATGTGCCGTCCCGTACCGGTTGCGACATGTTGCCGGAAACCGTGGGTCGTCTGGCGGAAATAAAAAATATTATCGCTATCAAAGAGGCGACAGGGAACTTAACCCGCGTTCACCAGATCAAAGAGCTGGTTTCAGACGATTTTATTCTGCTTAGCGGCGATGACGCGTCCGCGCTGGACTTTATGCAACTGGGTGGTCATGGCGTGATTTCCGTTACTGCTAACGTAGCGGCGCGCGATATGGCTGACATGTGCAAACTGGCGGCGGAAGGGCAATTTGCCGAGGCGCGCGCTATCAACCAGCGTCTGATGCCGTTACACAACAAACTATTTGTCGAACCCAATCCTATCCCGGTGAAATGGGCATGTAAGGCATTGGGTCTTGTGGCGACCGACACGCTGCGCCTGCCAATGACGCCTATCACCGACCATGGTCGTGACATCGTCAAAGCAGCGCTTCAGCATGCTGGCCTGCTGTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000052.1_43", "allele": 4288005734, "is_match": true, "allele_name": 926214622, "is_perfect": false, "has_perfect_match": false, "start_idx": 439616.0, "end_idx": 440494.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000059.1_68": {"name": 3016847250, "seq": "ATGGCAACTTATCTCATCGGCGACGTTCACGGTTGCTACGACGAACTGATCGCCTTATTACAGCAAGTGGAATTTACGCCAGATACAGACACTCTATGGCTGACTGGCGATTTGGTCGCCCGCGGTCCCGGTTCGCTGGACGTGTTACGCTACGTCAAATCGCTTGGCAATAGCGTGCGTTTGGTGCTGGGGAATCACGATTTACACCTGTTGGCCGTATTCGCCGGGATTAGCCGCAACAAACCTAAAGACCGGCTGACCCCGCTTCTTGAAGCGCCGGACGCCGATGAGCTGTTGAATTGGTTACGCCGTCAGCCGCTGTTGCAGGTAGATGAAGAGAAAAAGCTGGTCATGGCGCATGCGGGTATTACCCCACAGTGGGATTTGCAGACGGCAAAAGAGTGCGCCCGCGATGTTGAAGCGGTGCTGTCGAGCGACTCGTACCCGTTTTTCCTCGACGCGATGTATGGCGATATGCCGAATAACTGGTCGCCGGAGTTAAGCGGTCTGGCGCGGCTACGCTTTATTACTAATGCCTTTACCCGTATGCGTTACTGCTTTCCTAACGGTCAACTGGATATGTACAGCAAAGCGTCGCCGGAAAATGCCCCTGCGCCGCTGAAGCCGTGGTTCGCCATTCCGGGACCGGTGAGCGAGGCTTACAGTATTGCTTTCGGGCACTGGGCGTCGCTGGAAGGGAAAGGGACGCCAGAAGGTATTTACGCGCTGGATACCGGCTGCTGCTGGGGCGGGGAGTTAACCTGTTTACGTTGGGAAGATAAACAGTATTTTGTGCAGCCGTCAAACCGCCAGATGGATATGGGCGAAGGCGAAGCGGTCAACGCCTGA", "blast_result": {"qseqid": "NZ_AOXE01000059.1_68|161924140", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.882, "length": 849, "mismatch": 1, "gapopen": 0, "qstart": 1, "qend": 849, "sstart": 102067, "send": 101219, "evalue": 0.0, "bitscore": 1563.0, "qlen": 849, "slen": 699860, "sseq": "ATGGCAACTTATCTCATCGGCGACGTTCACGGTTGCTACGACGAACTGATCGCCTTATTACAGCAAGTGGAATTTACGCCAGATACAGACACTCTATGGCTGACTGGCGATTTGGTCGCCCGCGGTCCCGGTTCGCTGGACGTGTTACGCTACGTCAAATCGCTTGGCAATAGCGTGCGTTTGGTGCTGGGGAATCACGATTTACACCTGTTGGCCGTATTCGCCGGGATTAGCCGCAACAAACCTAAAGACCGGCTGACCCCGCTTCTTGAAGCGCCGGACGCCGATGAGCTGTTGAATTGGTTACGCCGTCAGCCGCTGTTGCAGGTAGATGAAGAGAAAAAGCTGGTCATGGCGCATGCGGGTATTACCCCACAGTGGGATTTGCAGACGGCAAAAGAGTGCGCCCGCGATGTTGAAGCGGTGCTGTCGAGCGACTCGTACCCGTTTTTCCTCGACGCGATGTATGGCGATATGCCGAATAACTGGTCGCCGGAGTTAAGCGGTCTGGCGCGGCTACGCTTTATTACTAATGCCTTTACCCGTATGCGTTACTGCTTTCCTAACGGTCAACTGGATATGTACAGCAAAGCGTCGCCGGAAAATGCCCCTGCGCCGCTGAAGCCGTGGTTCGCCATTCCGGGACCGGTGAGCGAGGCTTACAGTATTGCTTTCGGGCACTGGGCGTCGCTGGAAGGGAAAGGGACGCCAGAAGGTATTTACGCGCTGGATACCGGCTGCTGCTGGGGCGGGGAGTTAACCTGTTTACGTTGGGAAGATAAACAGTATTTTGTGCAGCCGTCAAACCGCCAGATGGATATGGGCGAAGGCGAAGCGGTCAACGCCTGA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000059.1_68", "allele": 161924140, "is_match": true, "allele_name": 3016847250, "is_perfect": false, "has_perfect_match": false, "start_idx": 101218.0, "end_idx": 102066.0, "needs_revcomp": true, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000059.1_66": {"name": 3105746335, "seq": "ATGAATAATCGAGTCCATCAGGGCCATTTAGCCCGTAAACGCTTCGGGCAAAACTTTCTCAACGATCGGTTTGTGATCGACAGTATTGTTTCTGCTATTAATCCGCAAAAAGGCCAGGCGATGGTTGAAATCGGCCCCGGTCTGGCGGCGCTGACGGAGCCGGTCGGCGAACGACTGGATAAGCTCACGGTCATTGAACTTGACCGCGATCTGGCGGCGCGTTTGCAAACCCATCCGTTTTTAGGGCCGAAGCTGACTATTTATCAGCAGGACGCCATGACCATGAACTTTGGCGAACTGTCTGCGCAGTTGGGCCAGCCGCTGCGTGTGTTCGGCAATCTGCCCTATAATATCTCCACCCCGCTGATGTTCCATCTCTTTAGCTATACTGATGCCATTGCCGACATGCACTTTATGTTGCAAAAAGAAGTGGTAAATCGTCTGGTTGCAGGGCCGAACAGCAAAGCGTATGGTCGTTTAAGCGTGATGGCGCAATATTACTGTCAGGTGATCCCGGTGCTTGAAGTGCCGCCATCCGCCTTCACGCCGCCGCCCAAAGTGGACTCCGCCGTGGTGCGTCTGGTTCCACACGCAACGATGCCTTACCCGGTTAAAGATATTCGCGTGTTGAGCCGTATTACCACCGAGGCCTTTAACCAGCGCCGTAAAACGATCCGTAATAGTCTCGGCAATCTTTTTAGCGTTGAGACGTTGACGGAAATGGGTATTGACCCGGCAATGCGCGCGGAAAATATCTCTGTCGCGCAGTACTGCCAGATGGCCAACTATCTGTCGGAAAACGCGCCTTTGAAGGAGAGTTAA", "blast_result": {"qseqid": "NZ_AOXE01000059.1_66|2100994146", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.757, "length": 822, "mismatch": 2, "gapopen": 0, "qstart": 1, "qend": 822, "sstart": 103279, "send": 102458, "evalue": 0.0, "bitscore": 1507.0, "qlen": 822, "slen": 699860, "sseq": "ATGAATAATCGAGTCCATCAGGGCCATTTAGCCCGTAAACGCTTCGGGCAAAACTTTCTCAACGATCGGTTTGTGATCGACAGTATTGTTTCTGCTATTAATCCGCAAAAAGGCCAGGCGATGGTTGAAATCGGCCCCGGTCTGGCGGCGCTGACGGAGCCGGTCGGCGAACGACTGGATAAGCTCACGGTCATTGAACTTGACCGCGATCTGGCGGCGCGTTTGCAAACCCATCCGTTTTTAGGGCCGAAGCTGACTATTTATCAGCAGGACGCCATGACCATGAACTTTGGCGAACTGTCTGCGCAGTTGGGCCAGCCGCTGCGTGTGTTCGGCAATCTGCCCTATAATATCTCCACCCCGCTGATGTTCCATCTCTTTAGCTATACTGATGCCATTGCCGACATGCACTTTATGTTGCAAAAAGAAGTGGTAAATCGTCTGGTTGCAGGGCCGAACAGCAAAGCGTATGGTCGTTTAAGCGTGATGGCGCAATATTACTGTCAGGTGATCCCGGTGCTTGAAGTGCCGCCATCCGCCTTCACGCCGCCGCCCAAAGTGGACTCCGCCGTGGTGCGTCTGGTTCCACACGCAACGATGCCTTACCCGGTTAAAGATATTCGCGTGTTGAGCCGTATTACCACCGAGGCCTTTAACCAGCGCCGTAAAACGATCCGTAATAGTCTCGGCAATCTTTTTAGCGTTGAGACGTTGACGGAAATGGGTATTGACCCGGCAATGCGCGCGGAAAATATCTCTGTCGCGCAGTACTGCCAGATGGCCAACTATCTGTCGGAAAACGCGCCTTTGAAGGAGAGTTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000059.1_66", "allele": 2100994146, "is_match": true, "allele_name": 3105746335, "is_perfect": false, "has_perfect_match": false, "start_idx": 102457.0, "end_idx": 103278.0, "needs_revcomp": true, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000033.1_51": {"name": 3293595301, "seq": "ATGCAGGAAAACCACATTCATTCCGATACCACCTTTGCGCTGCGAAGCGTCGCTTTTCGTGTGCCGGGCCGCACGCTTTTACACCCCCTCTCGTTAACGTTTCCCGCAGGTCGAGTCACCGGACTTATCGGCCATAATGGTTCCGGTAAATCCACGCTGTTAAAAATGCTGGGCCGCCATCAGCTGCCTTCCGAAGGGGATATTCTGCTCGACAATCAGCCGCTGGCGAGCTGGAGCAGCAAGGCGTTTGCCCGCAAAGTTGCCTATCTGCCTCAACAATTGCCGCAGGCGGAAGGAATGACGGTGCGCGAACTGGTGGCGATTGGCCGCTATCCGTGGCACGGCGCGTTGGGACGCTTTGGCGTCGCGGACCGGGAAAAAGTAGACGAGGCGATTACGCTGGTCGGCTTAAAACCGCTGGCGCATCGTCTGGTCGATAGCCTGTCCGGCGGTGAACGCCAGCGCGCGTGGATTGCCATGCTGGTCGCGCAGGACAGCCGTTGTCTGCTGCTGGATGAGCCGACGTCAGCGCTGGATATCGCCCATCAGGTTGACGTGCTGGCGCTGGTGCATCGTTTAAGCCAACAGCGCGGGCTGACGGTGGTTGCGGTGCTGCACGATATCAACATGGCGGCCCGCTACTGTGATTATTTAGTAGCGCTACGCGGCGGTGAAATGATTGCGCAAGGAACGCCTGCGGAACTGATGCGCAGTGACACGCTGGAACAGATTTACGGTATCCCGATGGGTATCCTTCCGCATCCGGCGGGCGCCGCGCCTGTGAGTTTTGTGTATTAA", "blast_result": {"qseqid": "NZ_AOXE01000033.1_51|3293595301", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 100.0, "length": 798, "mismatch": 0, "gapopen": 0, "qstart": 1, "qend": 798, "sstart": 230378, "send": 231175, "evalue": 0.0, "bitscore": 1474.0, "qlen": 798, "slen": 699860, "sseq": "ATGCAGGAAAACCACATTCATTCCGATACCACCTTTGCGCTGCGAAGCGTCGCTTTTCGTGTGCCGGGCCGCACGCTTTTACACCCCCTCTCGTTAACGTTTCCCGCAGGTCGAGTCACCGGACTTATCGGCCATAATGGTTCCGGTAAATCCACGCTGTTAAAAATGCTGGGCCGCCATCAGCTGCCTTCCGAAGGGGATATTCTGCTCGACAATCAGCCGCTGGCGAGCTGGAGCAGCAAGGCGTTTGCCCGCAAAGTTGCCTATCTGCCTCAACAATTGCCGCAGGCGGAAGGAATGACGGTGCGCGAACTGGTGGCGATTGGCCGCTATCCGTGGCACGGCGCGTTGGGACGCTTTGGCGTCGCGGACCGGGAAAAAGTAGACGAGGCGATTACGCTGGTCGGCTTAAAACCGCTGGCGCATCGTCTGGTCGATAGCCTGTCCGGCGGTGAACGCCAGCGCGCGTGGATTGCCATGCTGGTCGCGCAGGACAGCCGTTGTCTGCTGCTGGATGAGCCGACGTCAGCGCTGGATATCGCCCATCAGGTTGACGTGCTGGCGCTGGTGCATCGTTTAAGCCAACAGCGCGGGCTGACGGTGGTTGCGGTGCTGCACGATATCAACATGGCGGCCCGCTACTGTGATTATTTAGTAGCGCTACGCGGCGGTGAAATGATTGCGCAAGGAACGCCTGCGGAACTGATGCGCAGTGACACGCTGGAACAGATTTACGGTATCCCGATGGGTATCCTTCCGCATCCGGCGGGCGCCGCGCCTGTGAGTTTTGTGTATTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000033.1_51", "allele": 3293595301, "is_match": true, "allele_name": 3293595301, "is_perfect": true, "has_perfect_match": true, "start_idx": 230377.0, "end_idx": 231174.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000033.1_21": {"name": 607954140, "seq": "GTGATTGATAAATCCGTCTTTATTCATCCTACCGCCATTGTGGAAGACGGCGCTGTAATTGGCGCTAATGCCCACATTGGTCCCTTTTGTATTGTTGGGCCGCAGGTCGAAATTGGTGAGGGAACCGTACTGAAGTCTCATGTGGTCGTAAATGGTCAAACCAAAATCGGCCGCGACAACGAGATTTATCAGTTTGCCTCCATCGGTGAAGTGAACCAGGATCTGAAATATGCGGGTGAGCCAACCCGTGTGGAAATTGGCGATCGTAACCGCATCCGCGAAAGCGTCACCATTCATCGTGGTACAGTGCAGGGCGGTGGGTTGACGAAGGTGGGTAGCGATAACCTGCTGATGATCAATGCGCATGTCGCACATGATTGTACGGTAGGTAATCGCTGTATCCTCGCCAACAACGCCACGCTGGCGGGGCACGTATCAGTCGATGATTTTGCGATCATCGGCGGTATGACGGCAGTTCATCAATTCTGCATTATCGGTGCGCATGTGATGGTCGGCGGCTGCTCCGGCGTGGCGCAGGATGTCCCTCCGTATGTGATTGCGCAGGGTAACCATGCGACGCCGTTCGGGGTAAATATCGAAGGGCTGAAGCGTCGCGGCTTTAGCCGTGAAGGGCTGGTGGCGATTCGTAATGCCTACAAACTGTTGTACCGCAGTGGTAAAACGCTCGACGAAGCGAAGCTGGAAATCGCTGAACTTGCTGAAAAGCATCCGGAAGTGAAGGCGTTTACCGAGTTCTTTGAGCGTTCAACGCGCGGTCCGATTCGTTAA", "blast_result": {"qseqid": "NZ_AOXE01000033.1_21|607954140", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 100.0, "length": 789, "mismatch": 0, "gapopen": 0, "qstart": 1, "qend": 789, "sstart": 263868, "send": 264656, "evalue": 0.0, "bitscore": 1458.0, "qlen": 789, "slen": 699860, "sseq": "GTGATTGATAAATCCGTCTTTATTCATCCTACCGCCATTGTGGAAGACGGCGCTGTAATTGGCGCTAATGCCCACATTGGTCCCTTTTGTATTGTTGGGCCGCAGGTCGAAATTGGTGAGGGAACCGTACTGAAGTCTCATGTGGTCGTAAATGGTCAAACCAAAATCGGCCGCGACAACGAGATTTATCAGTTTGCCTCCATCGGTGAAGTGAACCAGGATCTGAAATATGCGGGTGAGCCAACCCGTGTGGAAATTGGCGATCGTAACCGCATCCGCGAAAGCGTCACCATTCATCGTGGTACAGTGCAGGGCGGTGGGTTGACGAAGGTGGGTAGCGATAACCTGCTGATGATCAATGCGCATGTCGCACATGATTGTACGGTAGGTAATCGCTGTATCCTCGCCAACAACGCCACGCTGGCGGGGCACGTATCAGTCGATGATTTTGCGATCATCGGCGGTATGACGGCAGTTCATCAATTCTGCATTATCGGTGCGCATGTGATGGTCGGCGGCTGCTCCGGCGTGGCGCAGGATGTCCCTCCGTATGTGATTGCGCAGGGTAACCATGCGACGCCGTTCGGGGTAAATATCGAAGGGCTGAAGCGTCGCGGCTTTAGCCGTGAAGGGCTGGTGGCGATTCGTAATGCCTACAAACTGTTGTACCGCAGTGGTAAAACGCTCGACGAAGCGAAGCTGGAAATCGCTGAACTTGCTGAAAAGCATCCGGAAGTGAAGGCGTTTACCGAGTTCTTTGAGCGTTCAACGCGCGGTCCGATTCGTTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000033.1_21", "allele": 607954140, "is_match": true, "allele_name": 607954140, "is_perfect": true, "has_perfect_match": true, "start_idx": 263867.0, "end_idx": 264655.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000033.1_34": {"name": 3673111880, "seq": "ATGGCTATCTCTATCAAGACATCTGAAGACATCGAAAAAATGCGCGTCGCGGGCCGTCTGGCAGCCGAAGTGCTGGAAATGATCGAACCGTATATCAAACCGGGCGTCACCACCGGCGAACTGGACCGTATCTGTAACGATTACATCGTTAACGAACAACACGCGATCTCCGCCTGCCTCGGCTACCACGGCTATCCGAAATCCGTCTGTATCTCTATTAATGAAGTGGTGTGCCACGGCATTCCGGATGACGCTAAACATCTGAAAGATGGTGATATCGTCAACATCGACGTGACCGTGATTAAAGATGAATTCCACGGCGATACCTCAAAGATGTTTATCGTCGGCAAACCGACTATTCTGGGCGAGCGTCTGTGCCGCGTCACGCAAGAGAGCCTGTATCTGGGCATCAAAATGGTGAAACCGGGCATCCGCCTGCGCACCATTGGCGCCGCCATCCAGAAATATGCCGAAGGCGAAGGTTTCTCCGTGGTACGTGAATACTGCGGACACGGTATTGGTCGCGGCTTCCATGAAGAACCGCAGGTGCTGCATTATGATGCAGACGATGGTGGCGTCGTGTTGCAGCCTGGCATGACCTTTACCATTGAACCGATGCTGAATGCCGGGGATTACCGTATCCGCACCATGAAAGACGGCTGGACGGTAAAAACCAAAGACCGCAGCTTGTCTGCTCAGTACGAGCATACTATTGTGGTAACGGAAAACGGCTGTGAAATTCTGACGCTGCGTAAAGATGACACCATCCCGGCGATCATCACACACGACGAATAA", "blast_result": {"qseqid": "NZ_AOXE01000033.1_34|3574109408", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.62200000000001, "length": 793, "mismatch": 3, "gapopen": 0, "qstart": 3, "qend": 795, "sstart": 250720, "send": 249928, "evalue": 0.0, "bitscore": 1448.0, "qlen": 795, "slen": 699860, "sseq": "GGCTATCTCTATCAAGACATCTGAAGACATCGAAAAAATGCGCGTCGCGGGCCGTCTGGCAGCCGAAGTGCTGGAAATGATCGAACCGTATATCAAACCGGGCGTCACCACCGGCGAACTGGACCGTATCTGTAACGATTACATCGTTAACGAACAACACGCGATCTCCGCCTGCCTCGGCTACCACGGCTATCCGAAATCCGTCTGTATCTCTATTAATGAAGTGGTGTGCCACGGCATTCCGGATGACGCTAAACATCTGAAAGATGGTGATATCGTCAACATCGACGTGACCGTGATTAAAGATGAATTCCACGGCGATACCTCAAAGATGTTTATCGTCGGCAAACCGACTATTCTGGGCGAGCGTCTGTGCCGCGTCACGCAAGAGAGCCTGTATCTGGGCATCAAAATGGTGAAACCGGGCATCCGCCTGCGCACCATTGGCGCCGCCATCCAGAAATATGCCGAAGGCGAAGGTTTCTCCGTGGTACGTGAATACTGCGGACACGGTATTGGTCGCGGCTTCCATGAAGAACCGCAGGTGCTGCATTATGATGCAGACGATGGTGGCGTCGTGTTGCAGCCTGGCATGACCTTTACCATTGAACCGATGCTGAATGCCGGGGATTACCGTATCCGCACCATGAAAGACGGCTGGACGGTAAAAACCAAAGACCGCAGCTTGTCTGCTCAGTACGAGCATACTATTGTGGTAACGGAAAACGGCTGTGAAATTCTGACGCTGCGTAAAGATGACACCATCCCGGCGATCATCACACACGACGAATAA", "coverage": 0.9974842767295597, "is_trunc": false, "marker": "NZ_AOXE01000033.1_34", "allele": 3574109408, "is_match": false, "allele_name": 2411902546, "is_perfect": false, "has_perfect_match": false, "start_idx": 249927.0, "end_idx": 250721.0, "needs_revcomp": true, "trunc": false, "is_extended": true, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false, "qseq_msa": "aaggctatctctatcaagacatctgaagacatcgaaaaaatgcgcgtcgcgggccgtctggcagccgaagtgctggaaatgatcgaaccgtatatcaaaccgggcgtcaccaccggcgaactggaccgtatctgtaacgattacatcgttaacgaacaacacgcgatctccgcctgcctcggctaccacggctatccgaaatccgtctgtatctctattaatgaagtggtgtgccacggcattccggatgacgctaaacatctgaaagatggtgatatcgtcaacatcgacgtgaccgtgattaaagatgaattccacggcgatacctcaaagatgtttatcgtcggcaaaccgaccattctgggcgagcgtctgtgccgcgtcacgcaagagagcctgtatctgggcatcaaaatggtgaaaccgggcatccgcctgcgcaccattggcgccgccatccagaaatatgccgaaggcgaaggtttctccgtggtacgtgaatactgcggacacggtattggtcgcggcttccatgaagaaccgcaggtgctgcattatgatgcagacgatggcggcgtcgtgttgcagcctggcatgacctttaccattgaaccgatgctgaacgccggggattaccgtatccgcaccatgaaagacggctggacggtaaaaaccaaagaccgcagcttgtctgctcagtacgagcatactattgtggtaacggaaaacggctgtgaaattctgacgctgcgtaaagatgacaccatcccggcgatcatcacacacgacgaataa", "qseq_msa_trimmed": "aaggctatctctatcaagacatctgaagacatcgaaaaaatgcgcgtcgcgggccgtctggcagccgaagtgctggaaatgatcgaaccgtatatcaaaccgggcgtcaccaccggcgaactggaccgtatctgtaacgattacatcgttaacgaacaacacgcgatctccgcctgcctcggctaccacggctatccgaaatccgtctgtatctctattaatgaagtggtgtgccacggcattccggatgacgctaaacatctgaaagatggtgatatcgtcaacatcgacgtgaccgtgattaaagatgaattccacggcgatacctcaaagatgtttatcgtcggcaaaccgaccattctgggcgagcgtctgtgccgcgtcacgcaagagagcctgtatctgggcatcaaaatggtgaaaccgggcatccgcctgcgcaccattggcgccgccatccagaaatatgccgaaggcgaaggtttctccgtggtacgtgaatactgcggacacggtattggtcgcggcttccatgaagaaccgcaggtgctgcattatgatgcagacgatggcggcgtcgtgttgcagcctggcatgacctttaccattgaaccgatgctgaacgccggggattaccgtatccgcaccatgaaagacggctggacggtaaaaaccaaagaccgcagcttgtctgctcagtacgagcatactattgtggtaacggaaaacggctgtgaaattctgacgctgcgtaaagatgacaccatcccggcgatcatcacacacgacgaataa", "sseq_msa": "atggctatctctatcaagacatctgaagacatcgaaaaaatgcgcgtcgcgggccgtctggcagccgaagtgctggaaatgatcgaaccgtatatcaaaccgggcgtcaccaccggcgaactggaccgtatctgtaacgattacatcgttaacgaacaacacgcgatctccgcctgcctcggctaccacggctatccgaaatccgtctgtatctctattaatgaagtggtgtgccacggcattccggatgacgctaaacatctgaaagatggtgatatcgtcaacatcgacgtgaccgtgattaaagatgaattccacggcgatacctcaaagatgtttatcgtcggcaaaccgactattctgggcgagcgtctgtgccgcgtcacgcaagagagcctgtatctgggcatcaaaatggtgaaaccgggcatccgcctgcgcaccattggcgccgccatccagaaatatgccgaaggcgaaggtttctccgtggtacgtgaatactgcggacacggtattggtcgcggcttccatgaagaaccgcaggtgctgcattatgatgcagacgatggtggcgtcgtgttgcagcctggcatgacctttaccattgaaccgatgctgaatgccggggattaccgtatccgcaccatgaaagacggctggacggtaaaaaccaaagaccgcagcttgtctgctcagtacgagcatactattgtggtaacggaaaacggctgtgaaattctgacgctgcgtaaagatgacaccatcccggcgatcatcacacacgacgaataa", "sseq_msa_trimmed": "atggctatctctatcaagacatctgaagacatcgaaaaaatgcgcgtcgcgggccgtctggcagccgaagtgctggaaatgatcgaaccgtatatcaaaccgggcgtcaccaccggcgaactggaccgtatctgtaacgattacatcgttaacgaacaacacgcgatctccgcctgcctcggctaccacggctatccgaaatccgtctgtatctctattaatgaagtggtgtgccacggcattccggatgacgctaaacatctgaaagatggtgatatcgtcaacatcgacgtgaccgtgattaaagatgaattccacggcgatacctcaaagatgtttatcgtcggcaaaccgactattctgggcgagcgtctgtgccgcgtcacgcaagagagcctgtatctgggcatcaaaatggtgaaaccgggcatccgcctgcgcaccattggcgccgccatccagaaatatgccgaaggcgaaggtttctccgtggtacgtgaatactgcggacacggtattggtcgcggcttccatgaagaaccgcaggtgctgcattatgatgcagacgatggtggcgtcgtgttgcagcctggcatgacctttaccattgaaccgatgctgaatgccggggattaccgtatccgcaccatgaaagacggctggacggtaaaaaccaaagaccgcagcttgtctgctcagtacgagcatactattgtggtaacggaaaacggctgtgaaattctgacgctgcgtaaagatgacaccatcccggcgatcatcacacacgacgaataa"}}, "NZ_AOXE01000052.1_131": {"name": 4160823845, "seq": "GTGTATCAGGTCTGTTTCGTGTGCTGGATTGTTGACGCATTCATTTATTGGTATCGCATGAACCCCATCGTAATTAATCGGCTTCAACGGAAGCTGGGCTACACTTTTAATCATCAGGAGCTGTTGCAGCAGGCATTAACTCACCGCAGCGCCAGCAGTAAACATAACGAACGCCTGGAGTTTTTAGGCGATTCAATCCTGAGCTTCGTTATCGCTAACGCGCTTTATCACCGTTTTCCACGGGTGGATGAGGGAGATATGAGCCGTATGCGCGCCACGTTGGTACGTGGTAATACGCTGGCGGAATTAGCCCGTGAATTTGATTTAGGCGAGTGCCTGCGTTTAGGGCCGGGCGAATTAAAAAGCGGCGGATTTCGTCGGGAGTCCATTCTGGCGGACACCGTGGAAGCGTTAATCGGCGGAGTATTTCTCGATAGCAATATCCAGACCGTCGAGCAGTTAATCCTTAACTGGTATAAAACCCGTCTGGATGAGATAAGTCCGGGCGATAAACAAAAAGATCCTAAAACGCGCTTGCAGGAGTATTTGCAGGGTCGCCATCTGCCGCTGCCATCTTACCTGGTTGTGCAGGTACGCGGCGAGGCGCACGATCAGGAATTTACTATCCACTGCCAGGTCAGCGGCCTGAGCGAACCGGTGGTTGGCACGGGTTCCAGCCGTCGTAAGGCGGAGCAGGCTGCCGCCGAACAGGCGCTGAAAAAACTGGAGTTGGAATGA", "blast_result": {"qseqid": "NZ_AOXE01000052.1_131|731848309", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.86399999999999, "length": 738, "mismatch": 1, "gapopen": 0, "qstart": 1, "qend": 738, "sstart": 315198, "send": 315935, "evalue": 0.0, "bitscore": 1358.0, "qlen": 738, "slen": 699860, "sseq": "GTGTATCAGGTCTGTTTCGTGTGCTGGATTGTTGACGCATTCATTTATTGGTATCGCATGAACCCCATCGTAATTAATCGGCTTCAACGGAAGCTGGGCTACACTTTTAATCATCAGGAGCTGTTGCAGCAGGCATTAACTCACCGCAGCGCCAGCAGTAAACATAACGAACGCCTGGAGTTTTTAGGCGATTCAATCCTGAGCTTCGTTATCGCTAACGCGCTTTATCACCGTTTTCCACGGGTGGATGAGGGAGATATGAGCCGTATGCGCGCCACGTTGGTACGTGGTAATACGCTGGCGGAATTAGCCCGTGAATTTGATTTAGGCGAGTGCCTGCGTTTAGGGCCGGGCGAATTAAAAAGCGGCGGATTTCGTCGGGAGTCCATTCTGGCGGACACCGTGGAAGCGTTAATCGGCGGAGTATTTCTCGATAGCAATATCCAGACCGTCGAGCAGTTAATCCTTAACTGGTATAAAACCCGTCTGGATGAGATAAGTCCGGGCGATAAACAAAAAGATCCTAAAACGCGCTTGCAGGAGTATTTGCAGGGTCGCCATCTGCCGCTGCCATCTTACCTGGTTGTGCAGGTACGCGGCGAGGCGCACGATCAGGAATTTACTATCCACTGCCAGGTCAGCGGCCTGAGCGAACCGGTGGTTGGCACGGGTTCCAGCCGTCGTAAGGCGGAGCAGGCTGCCGCCGAACAGGCGCTGAAAAAACTGGAGTTGGAATGA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000052.1_131", "allele": 731848309, "is_match": true, "allele_name": 4160823845, "is_perfect": false, "has_perfect_match": false, "start_idx": 315197.0, "end_idx": 315934.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000052.1_128": {"name": 2110459436, "seq": "ATGGCTGAATTACTGTTAGGCGTCAATATTGACCACATTGCCACGTTACGTAATGCGCGCGGCACCGACTATCCGGATCCGGTACAGGCGGCGTTTATTGCTGAACAGGCAGGCGCGGACGGCATTACCGTACACCTGCGCGAAGATCGTCGCCACATTACCGATCGCGATGTGCGCATTCTGCGTCAGACGCTGCATACGCGTATGAATCTGGAGATGGCGGTGACCGAAGAGATGCTGGCGATCGCCGTAGAAACCAGGCCGCATTTCTGTTGTCTGGTGCCGGAAAAACGCCAGGAAGTCACCACCGAAGGCGGCCTGGATGTGGCCGGACAGCGCGATAAAATGCGTGATGCCTGTGCGCGCCTAGCGGCGGCTGGCATCCAGGTTTCGCTCTTTATCGATGCCGATGAAAGGCAAATCAACGCGGCGGCGGAAGTCGGCGCGCCGTTTATCGAAATCCATACCGGCTGCTATGCCAACGCAGAAACCGATGCGGAACAGGCAAAAGAGCTGGCGCGTATTGCCAGCGCCGCGACCCTGGCGGCCCGTCTGGGGCTAAAAGTAAATGCGGGTCATGGCCTGACCTACCATAACGTCAAAGCTATTGCCGCACTGCCGGAAATGCACGAGCTCAATATCGGTCATGCCATTATTGGTCGGGCGGTGATGACGGGGCTGAAAGAGGCGGTGGCTGAAATGAAACGTTTGATGCTGGAAGCGCGCGGCTAA", "blast_result": {"qseqid": "NZ_AOXE01000052.1_128|2084698191", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.863, "length": 732, "mismatch": 0, "gapopen": 1, "qstart": 1, "qend": 731, "sstart": 317589, "send": 318320, "evalue": 0.0, "bitscore": 1345.0, "qlen": 731, "slen": 699860, "sseq": "ATGGCTGAATTACTGTTAGGCGTCAATATTGACCACATTGCCACGTTACGTAATGCGCGCGGCACCGACTATCCGGATCCGGTACAGGCGGCGTTTATTGCTGAACAGGCAGGCGCGGACGGCATTACCGTACACCTGCGCGAAGATCGTCGCCACATTACCGATCGCGATGTGCGCATTCTGCGTCAGACGCTGCATACGCGTATGAATCTGGAGATGGCGGTGACCGAAGAGATGCTGGCGATCGCCGTAGAAACCAGGCCGCATTTCTGTTGTCTGGTGCCGGAAAAACGCCAGGAAGTCACCACCGAAGGCGGCCTGGATGTGGCCGGACAGCGCGATAAAATGCGTGATGCCTGTGCGCGCCTAGCGGCGGCTGGCATCCAGGTTTCGCTCTTTATCGATGCCGATGAAAGGCAAATCAACGCGGCGGCGGAAGTCGGCGCGCCGTTTATCGAAATCCATACCGGCTGCTATGCCAACGCAGAAACCGATGCGGAACAGGCAAAAGAGCTGGCGCGTATTGCCAGCGCCGCGACCCTGGCGGCCCGTCTGGGGCTAAAAGTAAATGCGGGTCATGGCCTGACCTACCATAACGTCAAAGCTATTGCCGCACTGCCGGAAATGCACGAGCTCAATATCGGTCATGCCATTATTGGTCGGGCGGTGATGACGGGGCTGAAAGAGGCGGTGGCTGAAATGAAACGTTTGATGCTGGAAGCGCGCGGCTAA", "coverage": 1.0013679890560876, "is_trunc": false, "marker": "NZ_AOXE01000052.1_128", "allele": 2084698191, "is_match": true, "allele_name": 2110459436, "is_perfect": false, "has_perfect_match": false, "start_idx": 317588.0, "end_idx": 318319.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000052.1_41": {"name": 1973458150, "seq": "ATGCAAAAGCAAGCTGAGTTGTATCGTGGTAAAGCGAAAACCGTATACAGCACGGAAAACCCGGACCTGTTGGTGCTCGAATTCCGCAATGATACGTCAGCAGGGGATGGCGCGCGCATTGAACAGTTTGATCGCAAAGGCATGGTAAATAACAAATTCAACCATTTCATTATGACCAAACTGGCCGAGGCGGGCATCCCGACCCAGATGGAACGTTTGCTGTCTGATACCGAGTGTCTGGTGAAGAAGCTGGAGATGGTGCCGGTTGAATGTGTGGTGCGCAACCGTGCGGCAGGGTCGCTGGTCAAGCGTCTGGGCGTGGAAGAAGGCATGGAGCTTAACCCGCCGATCTTCGATCTGTTCCTGAAAAACGACGCGCTGCACGACCCGATGGTGAATAGTTCCTACTGTGAAACTTTCGGGTGGGTAAGCCAGGAAAATCTGGCGCGTATGAAAGAGCTAACCTACAAAGCCAACGACGTACTAAAAAAACTGTTTGATGACGCGGGTCTTATCCTGGTGGATTTCAAACTGGAGTTTGGCCTGTATAAAGGCGAAGTGGTGCTGGGCGATGAGTTTTCACCGGACGGTAGCCGCCTGTGGGATAAAGAGACGCTGGACAAAATGGACAAAGACCGCTTCCGCCAGAGCCTGGGCGGTCTGATTGAAGCCTATGAAGCCGTTGCGCATCGCCTGGGCGTGAAATTAGATTAA", "blast_result": {"qseqid": "NZ_AOXE01000052.1_41|3900481525", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.86, "length": 714, "mismatch": 1, "gapopen": 0, "qstart": 1, "qend": 714, "sstart": 441721, "send": 442434, "evalue": 0.0, "bitscore": 1314.0, "qlen": 714, "slen": 699860, "sseq": "ATGCAAAAGCAAGCTGAGTTGTATCGTGGTAAAGCGAAAACCGTATACAGCACGGAAAACCCGGACCTGTTGGTGCTCGAATTCCGCAATGATACGTCAGCAGGGGATGGCGCGCGCATTGAACAGTTTGATCGCAAAGGCATGGTAAATAACAAATTCAACCATTTCATTATGACCAAACTGGCCGAGGCGGGCATCCCGACCCAGATGGAACGTTTGCTGTCTGATACCGAGTGTCTGGTGAAGAAGCTGGAGATGGTGCCGGTTGAATGTGTGGTGCGCAACCGTGCGGCAGGGTCGCTGGTCAAGCGTCTGGGCGTGGAAGAAGGCATGGAGCTTAACCCGCCGATCTTCGATCTGTTCCTGAAAAACGACGCGCTGCACGACCCGATGGTGAATAGTTCCTACTGTGAAACTTTCGGGTGGGTAAGCCAGGAAAATCTGGCGCGTATGAAAGAGCTAACCTACAAAGCCAACGACGTACTAAAAAAACTGTTTGATGACGCGGGTCTTATCCTGGTGGATTTCAAACTGGAGTTTGGCCTGTATAAAGGCGAAGTGGTGCTGGGCGATGAGTTTTCACCGGACGGTAGCCGCCTGTGGGATAAAGAGACGCTGGACAAAATGGACAAAGACCGCTTCCGCCAGAGCCTGGGCGGTCTGATTGAAGCCTATGAAGCCGTTGCGCATCGCCTGGGCGTGAAATTAGATTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000052.1_41", "allele": 3900481525, "is_match": true, "allele_name": 1973458150, "is_perfect": false, "has_perfect_match": false, "start_idx": 441720.0, "end_idx": 442433.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXI01000005.1_72": {"name": 1007978530, "seq": "ATGAAATCAATCAAATCATTAATGCCTGAGGAGGCTCACGTGCAGTGTAAAGGTTTTCTGTTTGATCTGGATGGAACGTTGGTTGACTCATTACCTGCCGTCGAACGCGCGTGGTGTAGCTGGGCCGATCGTTTTAACCTTGCTCATGATGAGGTGCTGGGCTTTATTCATGGCAAACAGGCGATCACCTCGTTGCGGCATTTTATGGCGGGTAAATCGGAGGCGGAAATTGCCGCTGAGTTTACGCGCCTGGAGCAAATAGAAGCCACTGAAACCGCAGGGATCACCGCGTTGCCGGGGGCAGTCGATTTACTCAATCACCTGAATAAAGCGGGCATTCCGTGGGCTATCGTCACCTCCGGTTCAATGCCGGTCGCGCGTGCGCGCCATCAGGTCGCGGGCCTTCCAGCGCCAGAGGTGTTTGTCACCGCCGAACGAGTCAAACGCGGCAAACCGGAGCCGGATGCGTATTTGCTGGGCGCACAACTGCTTGGCCTGGCCCCTCAGGAGTGCGTCGTAGTAGAAGATGCCCCGGCTGGCGTGCTGTCCGGACTGGCTGCGGGCTGCCACGTCATTGCGGTCAATGCGCCGGCCGACACGCCGCGTCTGGCGGATGTTGATTTTGCGTTGGATAGCCTGACGCAATTATCGGTCGCTAAACAACCAAACGGCGATGTGGTGGTGTTAAGAAAGACCTGA", "blast_result": {"qseqid": "NZ_AOXI01000005.1_72|1457206149", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.85700000000001, "length": 699, "mismatch": 1, "gapopen": 0, "qstart": 1, "qend": 699, "sstart": 603095, "send": 603793, "evalue": 0.0, "bitscore": 1286.0, "qlen": 699, "slen": 699860, "sseq": "ATGAAATCAATCAAATCATTAATGCCTGAGGAGGCTCACGTGCAGTGTAAAGGTTTTCTGTTTGATCTGGATGGAACGTTGGTTGACTCATTACCTGCCGTCGAACGCGCGTGGTGTAGCTGGGCCGATCGTTTTAACCTTGCTCATGATGAGGTGCTGGGCTTTATTCATGGCAAACAGGCGATCACCTCGTTGCGGCATTTTATGGCGGGTAAATCGGAGGCGGAAATTGCCGCTGAGTTTACGCGCCTGGAGCAAATAGAAGCCACTGAAACCGCAGGGATCACCGCGTTGCCGGGGGCAGTCGATTTACTCAATCACCTGAATAAAGCGGGCATTCCGTGGGCTATCGTCACCTCCGGTTCAATGCCGGTCGCGCGTGCGCGCCATCAGGTCGCGGGCCTTCCAGCGCCAGAGGTGTTTGTCACCGCCGAACGAGTCAAACGCGGCAAACCGGAGCCGGATGCGTATTTGCTGGGCGCACAACTGCTTGGCCTGGCCCCTCAGGAGTGCGTCGTAGTAGAAGATGCCCCGGCTGGCGTGCTGTCCGGACTGGCTGCGGGCTGCCACGTCATTGCGGTCAATGCGCCGGCCGACACGCCGCGTCTGGCGGATGTTGATTTTGCGTTGGATAGCCTGACGCAATTATCGGTCGCTAAACAACCAAACGGCGATGTGGTGGTGTTAAGAAAGACCTGA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXI01000005.1_72", "allele": 1457206149, "is_match": true, "allele_name": 1007978530, "is_perfect": false, "has_perfect_match": false, "start_idx": 603094.0, "end_idx": 603792.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000033.1_43": {"name": 1367997025, "seq": "ATGAAAATCGGCATCATTGGCGCAATGGAAGAAGAAGTTACGCTGCTGCGTGACAAAATTGACAACCGTCAGACGATTACGCTGGGCGGCTGCGAAATTTACACTGGCCAGTTGAACGGCACCGAAGTGGCGTTGCTGAAATCCGGTATCGGTAAAGTCGCGGCGGCGCTGGGCGCAACGTTGCTTCTGGAGCACTGCAAGCCGGACGTGATCATCAATACCGGTTCCGCAGGCGGTCTGGCGTCCACGCTGAAGGTCGGCGATATCGTCGTCTCTGACGAAGCGCGTTACCACGACGCTGATGTGACCGCTTTCGGCTATGAATACGGGCAATTACCGGGCTGTCCGGCCGGATTTAAGGCCGATGATAAGCTGATCGCCGCCGCGGAATCCTGCATCAGGGAGTTGAATCTGAACGCGGTACGCGGCCTTATTGTTAGCGGCGACGCGTTTATTAACGGTTCCGTCGGGCTGGCGAAAATCCGGCATAACTTCCCCGACGCGGTCGCCGTAGAGATGGAAGCCACCGCTATCGCCCACGTCTGCCATAACTTCAACGTGCCGTTCGTGGTGGTACGCGCTATCTCTGACGTGGCCGATCAGCAATCGCACCTCAGCTTTGACGAATTCCTCGCGGTGGCGGCGAAACAGTCGACTCTGATGGTCGAAACGCTGGTACAGAAACTGGCGCATGGCTAA", "blast_result": {"qseqid": "NZ_AOXE01000033.1_43|519852459", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.571, "length": 699, "mismatch": 3, "gapopen": 0, "qstart": 1, "qend": 699, "sstart": 239759, "send": 239061, "evalue": 0.0, "bitscore": 1275.0, "qlen": 699, "slen": 699860, "sseq": "ATGAAAATCGGCATCATTGGCGCAATGGAAGAAGAAGTTACGCTGCTGCGTGACAAAATTGACAACCGTCAGACGATTACGCTGGGCGGCTGCGAAATTTACACTGGCCAGTTGAACGGCACCGAAGTGGCGTTGCTGAAATCCGGTATCGGTAAAGTCGCGGCGGCGCTGGGCGCAACGTTGCTTCTGGAGCACTGCAAGCCGGACGTGATCATCAATACCGGTTCCGCAGGCGGTCTGGCGTCCACGCTGAAGGTCGGCGATATCGTCGTCTCTGACGAAGCGCGTTACCACGACGCTGATGTGACCGCTTTCGGCTATGAATACGGGCAATTACCGGGCTGTCCGGCCGGATTTAAGGCCGATGATAAGCTGATCGCCGCCGCGGAATCCTGCATCAGGGAGTTGAATCTGAACGCGGTACGCGGCCTTATTGTTAGCGGCGACGCGTTTATTAACGGTTCCGTCGGGCTGGCGAAAATCCGGCATAACTTCCCCGACGCGGTCGCCGTAGAGATGGAAGCCACCGCTATCGCCCACGTCTGCCATAACTTCAACGTGCCGTTCGTGGTGGTACGCGCTATCTCTGACGTGGCCGATCAGCAATCGCACCTCAGCTTTGACGAATTCCTCGCGGTGGCGGCGAAACAGTCGACTCTGATGGTCGAAACGCTGGTACAGAAACTGGCGCATGGCTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000033.1_43", "allele": 519852459, "is_match": true, "allele_name": 1367997025, "is_perfect": false, "has_perfect_match": false, "start_idx": 239060.0, "end_idx": 239758.0, "needs_revcomp": true, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000031.1_102": {"name": 3969539340, "seq": "ATGGACCTGATCTACTTTATTATTGATTTTATTCTGCACATCGATGTGCATCTGGCGGAGCTGGTCGCGGAGTACGGCGTCTGGGTGTACGCTATTTTGTTTTTGATTCTGTTTTGTGAAACCGGCCTGGTCGTCACGCCGTTCCTGCCGGGCGACTCGCTGCTGTTTGTCGCCGGGGCGCTGGCTTCGCTGGAAACCAACGATCTCAATGTGCATGTCATGGTGGCGTTAATGCTGATCGCCGCAATTGTCGGCGATGCGGTAAATTACACGATTGGTCGACTGTTCGGCGAAAAACTGTTCAGTAATCCGAATTCGAAAATTTTCCGCCGCAGTTATCTGGATAAAACCCACCAGTTTTATGAAAAACACGGCGGTAAAACTATCATTCTCGCTCGCTTCGTGCCGATCGTCAGAACCTTTGCGCCGTTTGTGGCAGGGATGGGGCACATGTCCTATCGGCATTTTGCCGCCTATAACGTCATCGGCGCGCTGCTGTGGGTGCTGCTCTTTACCTACGCCGGTTATTTCTTCGGTACGATACCGTTGATTCAGGATAACCTTAAGCTGCTGATTGTGGGGATTATCGTGGTTTCGATATTACCTGGCGTCATTGAGATTGTCCGGCATAAGCGCGCTGCGTCGCGTGCCGCAAAATAG", "blast_result": {"qseqid": "NZ_AOXE01000031.1_102|3969539340", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 100.0, "length": 660, "mismatch": 0, "gapopen": 0, "qstart": 1, "qend": 660, "sstart": 569279, "send": 569938, "evalue": 0.0, "bitscore": 1219.0, "qlen": 660, "slen": 699860, "sseq": "ATGGACCTGATCTACTTTATTATTGATTTTATTCTGCACATCGATGTGCATCTGGCGGAGCTGGTCGCGGAGTACGGCGTCTGGGTGTACGCTATTTTGTTTTTGATTCTGTTTTGTGAAACCGGCCTGGTCGTCACGCCGTTCCTGCCGGGCGACTCGCTGCTGTTTGTCGCCGGGGCGCTGGCTTCGCTGGAAACCAACGATCTCAATGTGCATGTCATGGTGGCGTTAATGCTGATCGCCGCAATTGTCGGCGATGCGGTAAATTACACGATTGGTCGACTGTTCGGCGAAAAACTGTTCAGTAATCCGAATTCGAAAATTTTCCGCCGCAGTTATCTGGATAAAACCCACCAGTTTTATGAAAAACACGGCGGTAAAACTATCATTCTCGCTCGCTTCGTGCCGATCGTCAGAACCTTTGCGCCGTTTGTGGCAGGGATGGGGCACATGTCCTATCGGCATTTTGCCGCCTATAACGTCATCGGCGCGCTGCTGTGGGTGCTGCTCTTTACCTACGCCGGTTATTTCTTCGGTACGATACCGTTGATTCAGGATAACCTTAAGCTGCTGATTGTGGGGATTATCGTGGTTTCGATATTACCTGGCGTCATTGAGATTGTCCGGCATAAGCGCGCTGCGTCGCGTGCCGCAAAATAG", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000031.1_102", "allele": 3969539340, "is_match": true, "allele_name": 3969539340, "is_perfect": true, "has_perfect_match": true, "start_idx": 569278.0, "end_idx": 569937.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000033.1_3": {"name": 2914087704, "seq": "ATGTCTGAGGCAATGATGTGGTTACTGGTTCGTGGCGTCTGGGAAACGCTGGCGATGACCTTTGTCTCCGGTTTCTTCGGTTTCGTGATTGGCCTGCCGGTTGGCGTATTGCTGTATGTTACGCGCCCGGGGCAGATTATGGAGAACGCCAGGCTGTATCGCTCCCTCTCTGCGGTGGTCAATATTTTCCGCTCGATTCCCTTTATCATCCTGTTGGTGTGGATGATTCCTTTTACCCGAATAATTGTCGGCACCTCCATTGGTTTGCAGGCCGCGATTGTACCGCTGACCGTCGGCGCCGCGCCTTTTATCGCCCGTATAGTGGAAAATGCGTTGTTAGAGATCCCTGCCGGGCTGATTGAAGCCTCGCGAGCGATGGGCGCCACGCCGCTGCAAATTGTACGTAAAATCCTTTTACCGGAAGCGCTGCCTGGTCTGGTGAATGCGGCAACCATTACACTAATCACCCTGGTCGGTTACTCCGCAATGGGCGGCGCCGTCGGCGCAGGCGGCCTCGGTCAAATCGGCTATCAGTACGGTTATATTGGATACAATGCTACCGTGATGAATACGGTGCTGGTATTACTTGTCGTTCTGGTTTATTTAATTCAGTTATCCGGCGATCGCATCGTCAGGGCTGTCACGCATAAGTAA", "blast_result": {"qseqid": "NZ_AOXE01000033.1_3|1075073726", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.235, "length": 654, "mismatch": 4, "gapopen": 1, "qstart": 1, "qend": 653, "sstart": 285319, "send": 284666, "evalue": 0.0, "bitscore": 1179.0, "qlen": 653, "slen": 699860, "sseq": "ATGTCTGAGGCAATGATGTGGTTACTGGTTCGTGGCGTCTGGGAAACGCTGGCGATGACCTTTGTCTCCGGTTTCTTCGGTTTCGTGATTGGCCTGCCGGTTGGCGTATTGCTGTATGTTACGCGCCCGGGGCAGATTATGGAGAACGCCAGGCTGTATCGCTCCCTCTCTGCGGTGGTCAATATTTTCCGCTCGATTCCCTTTATCATCCTGTTGGTGTGGATGATTCCTTTTACCCGAATAATTGTCGGCACCTCCATTGGTTTGCAGGCCGCGATTGTACCGCTGACCGTCGGCGCCGCGCCTTTTATCGCCCGTATAGTGGAAAATGCGTTGTTAGAGATCCCTGCCGGGCTGATTGAAGCCTCGCGAGCGATGGGCGCCACGCCGCTGCAAATTGTACGTAAAATCCTTTTACCGGAAGCGCTGCCTGGTCTGGTGAATGCGGCAACCATTACACTAATCACCCTGGTCGGTTACTCCGCAATGGGCGGCGCCGTCGGCGCAGGCGGCCTCGGTCAAATCGGCTATCAGTACGGTTATATTGGATACAATGCTACCGTGATGAATACGGTGCTGGTATTACTTGTCGTTCTGGTTTATTTAATTCAGTTATCCGGCGATCGCATCGTCAGGGCTGTCACGCATAAGTAA", "coverage": 1.001531393568147, "is_trunc": false, "marker": "NZ_AOXE01000033.1_3", "allele": 1075073726, "is_match": true, "allele_name": 2914087704, "is_perfect": false, "has_perfect_match": false, "start_idx": 284665.0, "end_idx": 285318.0, "needs_revcomp": true, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000033.1_19": {"name": 1301843222, "seq": "ATGATCGAATTTGTTTATCCACACACCCATTTAGTGGCGGGTGTGGATGAAGTGGGCCGTGGCCCGCTGGTGGGCGCCGTAGTGACCGCCGCCGTGATCCTCGATCCGGCGCGTCCGATCGTCGGTCTGAATGATTCCAAAAAATTGTCTGAAAAGCGTCGTCTGTCATTGTATGACGAGATTAAAGAAAAGGCGTTAAGCTGGAGTCTGGGACGCGCGGAAGCGCATGAAATTGATGAGCTGAATATTTTGCACGCCACCATGCTCGCCATGCAGCGCGCTGTCGCTGGTCTGCATATTGCGCCAGAATATGTGCTGATCGACGGCAATCGCTGTCCGGAGCTGCCTGTGCCGTCAATGGCCGTGGTGAAAGGCGACAGCCGCGTGGCGGAGATTAGCGCGGCGTCTATTCTGGCGAAAGTCACCCGCGACGCAGAAATGGCGGCGCTGGATATCGTTTTTCCTCAGTATGGCTTTGCGCAGCACAAAGGCTATCCAACCGCTTTTCATCTGGAAAAGTTGGCCCAGTATGGCGCGACGGCGCACCACCGACGCAGTTTTGCGCCTGTTAAACGCGCTCTGGGACTTGTGTCCTGA", "blast_result": {"qseqid": "NZ_AOXE01000033.1_19|320317613", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.833, "length": 598, "mismatch": 0, "gapopen": 1, "qstart": 1, "qend": 598, "sstart": 265801, "send": 266397, "evalue": 0.0, "bitscore": 1098.0, "qlen": 598, "slen": 699860, "sseq": "ATGATCGAATTTGTTTATCCACACACCCATTTAGTGGCGGGTGTGGATGAAGTGGGCCGTGGCCCGCTGGTGGGCGCCGTAGTGACCGCCGCCGTGATCCTCGATCCGGCGCGTCCGATCGTCGGTCTGAATGATTCCAAAAAATTGTCTGAAAAGCGTCGTCTGTCATTGTATGACGAGATTAAAGAAAAGGCGTTAAGC-TGGAGTCTGGGACGCGCGGAAGCGCATGAAATTGATGAGCTGAATATTTTGCACGCCACCATGCTCGCCATGCAGCGCGCTGTCGCTGGTCTGCATATTGCGCCAGAATATGTGCTGATCGACGGCAATCGCTGTCCGGAGCTGCCTGTGCCGTCAATGGCCGTGGTGAAAGGCGACAGCCGCGTGGCGGAGATTAGCGCGGCGTCTATTCTGGCGAAAGTCACCCGCGACGCAGAAATGGCGGCGCTGGATATCGTTTTTCCTCAGTATGGCTTTGCGCAGCACAAAGGCTATCCAACCGCTTTTCATCTGGAAAAGTTGGCCCAGTATGGCGCGACGGCGCACCACCGACGCAGTTTTGCGCCTGTTAAACGCGCTCTGGGACTTGTGTCCTGA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000033.1_19", "allele": 320317613, "is_match": true, "allele_name": 1301843222, "is_perfect": false, "has_perfect_match": false, "start_idx": 265800.0, "end_idx": 266396.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000059.1_133": {"name": 490843778, "seq": "ATGAATACTTTACGCATTGGCCTGGTTTCCATTTCTGACCGTGCTTCCAGCGGCGTTTACCAGGATAAAGGTATCCCGGCCCTTGAAGAGTGGCTGGCATCTGCCCTTACCACCCCTTTTGAGCTGCAAACGCGACTGATCCCGGATGAACAGGCGATCATCGAACAGACCTTATGTGAACTGGTTGATGAGATGAGCTGTCATCTGGTGCTGACCACTGGCGGTACCGGTCCGGCACGTCGCGACGTCACGCCGGACGCGACCCTTGCCATCGCCGACCGTGAAATGCCTGGTTTTGGCGAACAGATGCGCCAGATCAGCCTGCGCTTTGTGCCGACCGCCATTCTTTCCCGCCAGGTGGGCGTTATCCGTAAACAGGCGTTAATTCTTAATCTGCCTGGACAGCCAAAATCGATCAAAGAAACGCTGGAAGGCGTAAAAGCGGACGATGGCAGCGTTAGCGTGCCGGGCATTTTTGCGAGCGTGCCGTATTGCATACAGCTGCTTGACGGGCCGTATGTCGAAACCGCGCCGGAAGTGGTTGCCGCTTTCCGTCCAAAGAGCGCCAGACGTGAGAATATGTCGTCCTGA", "blast_result": {"qseqid": "NZ_AOXE01000059.1_133|2359459701", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.662, "length": 591, "mismatch": 2, "gapopen": 0, "qstart": 1, "qend": 591, "sstart": 8729, "send": 9319, "evalue": 0.0, "bitscore": 1081.0, "qlen": 591, "slen": 699860, "sseq": "ATGAATACTTTACGCATTGGCCTGGTTTCCATTTCTGACCGTGCTTCCAGCGGCGTTTACCAGGATAAAGGTATCCCGGCCCTTGAAGAGTGGCTGGCATCTGCCCTTACCACCCCTTTTGAGCTGCAAACGCGACTGATCCCGGATGAACAGGCGATCATCGAACAGACCTTATGTGAACTGGTTGATGAGATGAGCTGTCATCTGGTGCTGACCACTGGCGGTACCGGTCCGGCACGTCGCGACGTCACGCCGGACGCGACCCTTGCCATCGCCGACCGTGAAATGCCTGGTTTTGGCGAACAGATGCGCCAGATCAGCCTGCGCTTTGTGCCGACCGCCATTCTTTCCCGCCAGGTGGGCGTTATCCGTAAACAGGCGTTAATTCTTAATCTGCCTGGACAGCCAAAATCGATCAAAGAAACGCTGGAAGGCGTAAAAGCGGACGATGGCAGCGTTAGCGTGCCGGGCATTTTTGCGAGCGTGCCGTATTGCATACAGCTGCTTGACGGGCCGTATGTCGAAACCGCGCCGGAAGTGGTTGCCGCTTTCCGTCCAAAGAGCGCCAGACGTGAGAATATGTCGTCCTGA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000059.1_133", "allele": 2359459701, "is_match": true, "allele_name": 490843778, "is_perfect": false, "has_perfect_match": false, "start_idx": 8728.0, "end_idx": 9318.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000052.1_137": {"name": 1648892875, "seq": "ATGAGCGAGCAGTTAACGGACCAGGTCCTGGTTGAACGGGTCCAGAAGGGAGATCAGAAAGCCTTTAACTTACTGGTAGTGCGCTACCAGCATAAAGTGGCGAGTCTGGTTTCCCGCTATGTGCCATCGGGCGACGTTCCCGATGTCGTACAGGAATCATTTATTAAGGCCTATCGCGCGCTGGATTCTTTCCGGGGGGATAGCGCTTTTTATACCTGGTTGTATCGTATTGCGGTCAATACCGCGAAGAACTACCTGGTTGCGCAGGGGCGTCGTCCGCCTTCCAGTGATGTAGACGCGATTGAAGCAGAAAACTTTGAAAGCGGCGGCGCGCTGAAAGAAATTTCGAACCCTGAGAACTTAATGTTGTCAGAAGAACTGAGACAGATAGTTTTCCGAACTATTGAGTCCCTCCCGGAAGATTTACGTATGGCAATCACCTTACGGGAGCTGGATGGCCTGAGCTATGAAGAGATAGCGGCTATCATGGATTGCCCGGTGGGGACGGTGCGTTCACGTATCTTCCGGGCGCGGGAAGCTATTGATAATAAAGTTCAACCGCTTATCAGGCGTTGA", "blast_result": {"qseqid": "NZ_AOXE01000052.1_137|2805629274", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.82600000000001, "length": 576, "mismatch": 1, "gapopen": 0, "qstart": 1, "qend": 576, "sstart": 309243, "send": 309818, "evalue": 0.0, "bitscore": 1059.0, "qlen": 576, "slen": 699860, "sseq": "ATGAGCGAGCAGTTAACGGACCAGGTCCTGGTTGAACGGGTCCAGAAGGGAGATCAGAAAGCCTTTAACTTACTGGTAGTGCGCTACCAGCATAAAGTGGCGAGTCTGGTTTCCCGCTATGTGCCATCGGGCGACGTTCCCGATGTCGTACAGGAATCATTTATTAAGGCCTATCGCGCGCTGGATTCTTTCCGGGGGGATAGCGCTTTTTATACCTGGTTGTATCGTATTGCGGTCAATACCGCGAAGAACTACCTGGTTGCGCAGGGGCGTCGTCCGCCTTCCAGTGATGTAGACGCGATTGAAGCAGAAAACTTTGAAAGCGGCGGCGCGCTGAAAGAAATTTCGAACCCTGAGAACTTAATGTTGTCAGAAGAACTGAGACAGATAGTTTTCCGAACTATTGAGTCCCTCCCGGAAGATTTACGTATGGCAATCACCTTACGGGAGCTGGATGGCCTGAGCTATGAAGAGATAGCGGCTATCATGGATTGCCCGGTGGGGACGGTGCGTTCACGTATCTTCCGGGCGCGGGAAGCTATTGATAATAAAGTTCAACCGCTTATCAGGCGTTGA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000052.1_137", "allele": 2805629274, "is_match": true, "allele_name": 1648892875, "is_perfect": false, "has_perfect_match": false, "start_idx": 309242.0, "end_idx": 309817.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000033.1_30": {"name": 1062106200, "seq": "GTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGAAAAATGCGTTGAAGCGTTCAAAACCCAAATCAGCAAAGTGCGCACGGGTCGTGCTTCTCCCAGCCTGCTGGATGGTATTGTCGTAGAATACTATGGCACTCCGACCCCGCTGCGCCAGTTGGCAAGCGTAACGGTAGAAGACTCCCGTACCTTAAAAATTAACGTGTTTGACCGTTCTATGGGGCCAGCCGTTGAAAAAGCGATCATGGCGTCAGACCTCGGTTTGAATCCAAGCTCTGCGGGCACCGATATTCGCGTTCCGCTGCCGCCGCTGACCGAAGAACGTCGTAAAGATCTGACGAAAATTGTCCGTGGAGAAGCGGAGCAGGCGCGTGTCGCCGTACGTAACGTCCGCCGTGATGCGAACGATAAAGTAAAAGCTCTGCTGAAAGATAAAGCGATCAGTGAAGATGACGATCGTCGCTCTCAGGAAGAAGTACAGAAAATGACCGACGCGGCAATTAAGAAAGTGGATGCGGCGTTGGCAGATAAAGAAGCAGAACTGATGCAGTTCTGA", "blast_result": {"qseqid": "NZ_AOXE01000033.1_30|3262632763", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.28299999999999, "length": 558, "mismatch": 4, "gapopen": 0, "qstart": 1, "qend": 558, "sstart": 254023, "send": 254580, "evalue": 0.0, "bitscore": 1009.0, "qlen": 558, "slen": 699860, "sseq": "GTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGAAAAATGCGTTGAAGCGTTCAAAACCCAAATCAGCAAAGTGCGCACGGGTCGTGCTTCTCCCAGCCTGCTGGATGGTATTGTCGTAGAATACTATGGCACTCCGACCCCGCTGCGCCAGTTGGCAAGCGTAACGGTAGAAGACTCCCGTACCTTAAAAATTAACGTGTTTGACCGTTCTATGGGGCCAGCCGTTGAAAAAGCGATCATGGCGTCAGACCTCGGTTTGAATCCAAGCTCTGCGGGCACCGATATTCGCGTTCCGCTGCCGCCGCTGACCGAAGAACGTCGTAAAGATCTGACGAAAATTGTCCGTGGAGAAGCGGAGCAGGCGCGTGTCGCCGTACGTAACGTCCGCCGTGATGCGAACGATAAAGTAAAAGCTCTGCTGAAAGATAAAGCGATCAGTGAAGATGACGATCGTCGCTCTCAGGAAGAAGTACAGAAAATGACCGACGCGGCAATTAAGAAAGTGGATGCGGCGTTGGCAGATAAAGAAGCAGAACTGATGCAGTTCTGA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000033.1_30", "allele": 3262632763, "is_match": true, "allele_name": 1062106200, "is_perfect": false, "has_perfect_match": false, "start_idx": 254022.0, "end_idx": 254579.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000083.1_86": {"name": 3258707132, "seq": "ATGAAACTGATGTTCGCATCGGACATTCATGGTTCTTTACCCGCCACGGAACGCGTGCTTGAGCGGTTCGCGCAAAGCGGCGCGCGTTGGCTGGTGATATTAGGCGATGTCCTTAACCACGGGCCGCGCAATGCGCTGCCTGAAGGCTATGCGCCCGCCCAGGTTGCCGAACGCCTGAACGCGGTGGCGACGCAAATCATTGCCGTGCGCGGCAACTGCGATAGCGAAGTGGATCAGATGCTGCTGCATTTCCCGATAACTGCACCGTGGCAGCAAATATTGACGCAAGAGAGGCGGCTATTTTTAACGCATGGGCACCTCTTCGGGCCGACGAATCTGCCCGCTCTGCATACTGGCGATGTGTTGGTCTATGGTCATACGCATCTGCCGGTGGCGCAACAGCAGGAAGGACTGTATCACTTTAATCCTGGGTCAGTGAGCATCCCGAAAGGCGGGTATGCAGCAAGCTACGGTATTCTGGATGATAATGTGTTGAGCGTAATCGCACTCAATGATCAAAGTATCATTGCGCAGGTTGCAATTAACTCGTAA", "blast_result": {"qseqid": "NZ_AOXE01000083.1_86|4207330955", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.275, "length": 552, "mismatch": 4, "gapopen": 0, "qstart": 1, "qend": 552, "sstart": 590120, "send": 590671, "evalue": 0.0, "bitscore": 998.0, "qlen": 552, "slen": 699860, "sseq": "ATGAAACTGATGTTCGCATCGGACATTCATGGTTCTTTACCCGCCACGGAACGCGTGCTTGAGCGGTTCGCGCAAAGCGGCGCGCGTTGGCTGGTGATATTAGGCGATGTCCTTAACCACGGGCCGCGCAATGCGCTGCCTGAAGGCTATGCGCCCGCCCAGGTTGCCGAACGCCTGAACGCGGTGGCGACGCAAATCATTGCCGTGCGCGGCAACTGCGATAGCGAAGTGGATCAGATGCTGCTGCATTTCCCGATAACTGCACCGTGGCAGCAAATATTGACGCAAGAGAGGCGGCTATTTTTAACGCATGGGCACCTCTTCGGGCCGACGAATCTGCCCGCTCTGCATACTGGCGATGTGTTGGTCTATGGTCATACGCATCTGCCGGTGGCGCAACAGCAGGAAGGACTGTATCACTTTAATCCTGGGTCAGTGAGCATCCCGAAAGGCGGGTATGCAGCAAGCTACGGTATTCTGGATGATAATGTGTTGAGCGTAATCGCACTCAATGATCAAAGTATCATTGCGCAGGTTGCAATTAACTCGTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000083.1_86", "allele": 4207330955, "is_match": true, "allele_name": 3258707132, "is_perfect": false, "has_perfect_match": false, "start_idx": 590119.0, "end_idx": 590670.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000083.1_74": {"name": 3051501604, "seq": "ATGGAAATGACCAACGCGCAACGTCTGATTTTGTCTAACCAGTACAAAATGATGACGATGCTCGATCCCACCAACGCCGAGCGTTACCGTCGCTTACAAACAATTATTGAACGCGGCTACGGCCTGCAGATGCGCGAGCTGGATCGCGAGTTTGGCGAGCTGACGGAAGAGACCTGTCGTACCATCATCGATATTATGGAGATGTACCATGCGCTGCACGTCTCCTGGACCAACCTCAAAGATACGCAAGCCATCGACGAACGTCGCGTCACCTTCCTGGGGTTTGACGCCGCGACGGAAGCGCGTTACCTCGGCTATGTCCGTTTTATGGTGAATATAGAAGGACGCTACACTCACTTTGACGCCGGGACGCACGGCTTTAATGCCCAGACGCCGATGTGGGAAAAATACCAGCGGATGTTGAATGTCTGGCATGCCTGCCCGCGTCAGTACCACCTGAGCGCGAATGAAATCAATCAAATCATTAATGCCTGA", "blast_result": {"qseqid": "NZ_AOXE01000083.1_74|3051501604", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 100.0, "length": 495, "mismatch": 0, "gapopen": 0, "qstart": 1, "qend": 495, "sstart": 602629, "send": 603123, "evalue": 0.0, "bitscore": 915.0, "qlen": 495, "slen": 699860, "sseq": "ATGGAAATGACCAACGCGCAACGTCTGATTTTGTCTAACCAGTACAAAATGATGACGATGCTCGATCCCACCAACGCCGAGCGTTACCGTCGCTTACAAACAATTATTGAACGCGGCTACGGCCTGCAGATGCGCGAGCTGGATCGCGAGTTTGGCGAGCTGACGGAAGAGACCTGTCGTACCATCATCGATATTATGGAGATGTACCATGCGCTGCACGTCTCCTGGACCAACCTCAAAGATACGCAAGCCATCGACGAACGTCGCGTCACCTTCCTGGGGTTTGACGCCGCGACGGAAGCGCGTTACCTCGGCTATGTCCGTTTTATGGTGAATATAGAAGGACGCTACACTCACTTTGACGCCGGGACGCACGGCTTTAATGCCCAGACGCCGATGTGGGAAAAATACCAGCGGATGTTGAATGTCTGGCATGCCTGCCCGCGTCAGTACCACCTGAGCGCGAATGAAATCAATCAAATCATTAATGCCTGA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000083.1_74", "allele": 3051501604, "is_match": true, "allele_name": 3051501604, "is_perfect": true, "has_perfect_match": true, "start_idx": 602628.0, "end_idx": 603122.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000031.1_106": {"name": 2545200385, "seq": "ATGGTCTGGATTGATTACGCCATTATCGCGGTGATTGCTTTTTCCTGTCTGGTTAGCCTGATCCGCGGCTTTGTTCGTGAAGCGTTATCGCTGGTGACGTGGGGTTGTGCTTTCTTTGTCGCCAGTCACTACTACACTTACCTGTCTGTCTGGTTTACGGGCTTTGAAGACGAACTGGTTCGTAATGGGATTGCTATCGCGGTACTGTTTATCGCGACGCTTATCGTCGGCGCTATCGTGAATTTTGTGATAGGTCAGCTAGTAGAAAAGACCGGCCTGTCGGGAACTGACCGGGTGTTGGGGATCTGTTTCGGCGCACTGCGAGGCGCGCTGATTGTCGCCGCCATTCTGTTCTTCCTTGATACCTTTACCGGCTTGTCGAAAAGCGAAGACTGGAGCAAATCGCAGCTCATCCCGCAGTTCAGCTTCATCATCAGATGGTTCTTTGACTATCTGCAAAGCTCGTCGAGTTTCTTGCCCAGGACGTAA", "blast_result": {"qseqid": "NZ_AOXE01000031.1_106|2545200385", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 100.0, "length": 489, "mismatch": 0, "gapopen": 0, "qstart": 1, "qend": 489, "sstart": 573313, "send": 573801, "evalue": 0.0, "bitscore": 904.0, "qlen": 489, "slen": 699860, "sseq": "ATGGTCTGGATTGATTACGCCATTATCGCGGTGATTGCTTTTTCCTGTCTGGTTAGCCTGATCCGCGGCTTTGTTCGTGAAGCGTTATCGCTGGTGACGTGGGGTTGTGCTTTCTTTGTCGCCAGTCACTACTACACTTACCTGTCTGTCTGGTTTACGGGCTTTGAAGACGAACTGGTTCGTAATGGGATTGCTATCGCGGTACTGTTTATCGCGACGCTTATCGTCGGCGCTATCGTGAATTTTGTGATAGGTCAGCTAGTAGAAAAGACCGGCCTGTCGGGAACTGACCGGGTGTTGGGGATCTGTTTCGGCGCACTGCGAGGCGCGCTGATTGTCGCCGCCATTCTGTTCTTCCTTGATACCTTTACCGGCTTGTCGAAAAGCGAAGACTGGAGCAAATCGCAGCTCATCCCGCAGTTCAGCTTCATCATCAGATGGTTCTTTGACTATCTGCAAAGCTCGTCGAGTTTCTTGCCCAGGACGTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000031.1_106", "allele": 2545200385, "is_match": true, "allele_name": 2545200385, "is_perfect": true, "has_perfect_match": true, "start_idx": 573312.0, "end_idx": 573800.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000059.1_69": {"name": 1928860657, "seq": "ATGATCAGTCTGATTGCGGCGTTAGCGGTGGATCGCGTCATCGGTATGGAAAACGCCATGCCGTGGAACCTGCCTGCCGATCTCGCATGGTTTAAACGTAACACGTTAAATAAACCTGTCGTCATGGGACGTCACACCTGGGAGTCCATCGGACGCCCCTTACCGGGACGTAAAAATATTATTATCAGCAGCCAGCCGGGCACCGACGATCGCGTGCAGTGGGTGAAGTCTGTCGATGAGGCGATTGCCGCTTGCGGCGATGCGCCGGAAATTATGGTCATTGGCGGCGGGCGCGTGTACGAGCAGTTCCTGCCAAAGGCGCAGAAGCTTTATCTGACGCATATTGATGCGGAAGTCGAAGGCGATACCCATTTTCCGGATTATGAACCGGATGACTGGGAATCGGTATTCAGTGAGTTTCACGATGCCGACGCGCAGAATTCTCACAGCTATTGTTTCGAGATTCTGGAGCGTCGTTAA", "blast_result": {"qseqid": "NZ_AOXE01000059.1_69|616419627", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.583, "length": 480, "mismatch": 2, "gapopen": 0, "qstart": 1, "qend": 480, "sstart": 100644, "send": 101123, "evalue": 0.0, "bitscore": 876.0, "qlen": 480, "slen": 699860, "sseq": "ATGATCAGTCTGATTGCGGCGTTAGCGGTGGATCGCGTCATCGGTATGGAAAACGCCATGCCGTGGAACCTGCCTGCCGATCTCGCATGGTTTAAACGTAACACGTTAAATAAACCTGTCGTCATGGGACGTCACACCTGGGAGTCCATCGGACGCCCCTTACCGGGACGTAAAAATATTATTATCAGCAGCCAGCCGGGCACCGACGATCGCGTGCAGTGGGTGAAGTCTGTCGATGAGGCGATTGCCGCTTGCGGCGATGCGCCGGAAATTATGGTCATTGGCGGCGGGCGCGTGTACGAGCAGTTCCTGCCAAAGGCGCAGAAGCTTTATCTGACGCATATTGATGCGGAAGTCGAAGGCGATACCCATTTTCCGGATTATGAACCGGATGACTGGGAATCGGTATTCAGTGAGTTTCACGATGCCGACGCGCAGAATTCTCACAGCTATTGTTTCGAGATTCTGGAGCGTCGTTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000059.1_69", "allele": 616419627, "is_match": true, "allele_name": 1928860657, "is_perfect": false, "has_perfect_match": false, "start_idx": 100643.0, "end_idx": 101122.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000083.1_53": {"name": 2640609716, "seq": "ATGATTGACTGGCAGGATCTCCACCATAGCGAACTTACTGTTCCTCAACTTTACGCGTTACTCAAATTGCGCTGCGCGGTCTTTGTGGTAGAACAGCGCTGTCCTTACCTGGATGTGGATGGCGATGATTTAGTCGGCGACAATCGGCATATTCTGGGCTGGCATCAGGATGAGCTGGTGGCGTATGCGAGGATTCTGAAAAGTGATAACGAATCAGACCCGGTTGTCATTGGCCGGGTGATCGTCAGCGATGCCTGGCGAGGGGCGAAACTGGGCCAGCAATTAATGGCGAAAACGCTGGAATCTTGTGGGCGGCACTGGCCGGATAAGCCGCTATATCTGGGGGCGCAGGCGCATCTGCAACCTTTTTATGCGCGGTTTGGTTTTATTCCCGTCACCGATGTTTATGACGAAGACGGCATTCCGCACCGGGGAATGGCGCGGGAGGTTCATCAGGCATAA", "blast_result": {"qseqid": "NZ_AOXE01000083.1_53|1998597791", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.56700000000001, "length": 462, "mismatch": 2, "gapopen": 0, "qstart": 1, "qend": 462, "sstart": 627522, "send": 627983, "evalue": 0.0, "bitscore": 843.0, "qlen": 462, "slen": 699860, "sseq": "ATGATTGACTGGCAGGATCTCCACCATAGCGAACTTACTGTTCCTCAACTTTACGCGTTACTCAAATTGCGCTGCGCGGTCTTTGTGGTAGAACAGCGCTGTCCTTACCTGGATGTGGATGGCGATGATTTAGTCGGCGACAATCGGCATATTCTGGGCTGGCATCAGGATGAGCTGGTGGCGTATGCGAGGATTCTGAAAAGTGATAACGAATCAGACCCGGTTGTCATTGGCCGGGTGATCGTCAGCGATGCCTGGCGAGGGGCGAAACTGGGCCAGCAATTAATGGCGAAAACGCTGGAATCTTGTGGGCGGCACTGGCCGGATAAGCCGCTATATCTGGGGGCGCAGGCGCATCTGCAACCTTTTTATGCGCGGTTTGGTTTTATTCCCGTCACCGATGTTTATGACGAAGACGGCATTCCGCACCGGGGAATGGCGCGGGAGGTTCATCAGGCATAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000083.1_53", "allele": 1998597791, "is_match": true, "allele_name": 2640609716, "is_perfect": false, "has_perfect_match": false, "start_idx": 627521.0, "end_idx": 627982.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000059.1_37": {"name": 1510445340, "seq": "ATGTTCCGGGGGGCAACGTTAGTCAATCTCGACAGTAAAGGGCGCCTGACCGTGCCGACCCGTTATCGGGAGCAACTGATCGAGAGCGCTACCGGTCAAATAGTATGTACCATTGACATCCATCACCCATGCCTGCTGCTTTACCCCCTGCCTGAATGGGAAATTATTGAGCAAAAGTTATCTCGTCTGTCGAGCATGAACCCGGTAGAACGTCGCGTACAGCGTTTACTGTTGGGCCATGCCAGTGAATGTCAGATGGATGGTGCAGGTCGATTACTGATCGCGCCAGTTCTGCGGCAACATGCCGGACTGACGAAAGAAGTGATGCTGGTTGGACAGTTCAACAAATTTGAGCTGTGGGATGAAACGACCTGGTATCAACAGGTCAAGGAAGATATCGACGCTGAACAGTCAGCTACCGAAACGTTATCGGAGCGGCTGCAGGACTTGTCTCTATAA", "blast_result": {"qseqid": "NZ_AOXE01000059.1_37|2467894309", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.564, "length": 459, "mismatch": 2, "gapopen": 0, "qstart": 1, "qend": 459, "sstart": 141353, "send": 141811, "evalue": 0.0, "bitscore": 837.0, "qlen": 459, "slen": 699860, "sseq": "ATGTTCCGGGGGGCAACGTTAGTCAATCTCGACAGTAAAGGGCGCCTGACCGTGCCGACCCGTTATCGGGAGCAACTGATCGAGAGCGCTACCGGTCAAATAGTATGTACCATTGACATCCATCACCCATGCCTGCTGCTTTACCCCCTGCCTGAATGGGAAATTATTGAGCAAAAGTTATCTCGTCTGTCGAGCATGAACCCGGTAGAACGTCGCGTACAGCGTTTACTGTTGGGCCATGCCAGTGAATGTCAGATGGATGGTGCAGGTCGATTACTGATCGCGCCAGTTCTGCGGCAACATGCCGGACTGACGAAAGAAGTGATGCTGGTTGGACAGTTCAACAAATTTGAGCTGTGGGATGAAACGACCTGGTATCAACAGGTCAAGGAAGATATCGACGCTGAACAGTCAGCTACCGAAACGTTATCGGAGCGGCTGCAGGACTTGTCTCTATAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000059.1_37", "allele": 2467894309, "is_match": true, "allele_name": 1510445340, "is_perfect": false, "has_perfect_match": false, "start_idx": 141352.0, "end_idx": 141810.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000059.1_94": {"name": 1175502179, "seq": "ATGTCTAAATCCGTACAGAGCAACAGCGCGATCCTCGTTCACTTCACCCTGAAACTGGATGATGGCTCAACGGCGGAATCTACCCGCAATAACGGCAAGCCAGCCCTGTTCCGTCTTGGCGATACCTCGCTTTCCGAAGGTCTGGAGCAGCAGCTTCTGGGGTTGAAAGAAGGGGAAAAGAAAGCGTTTTCGCTGGAGCCTGACGCCGCGTTTGGCGTCCCCAGTCCGGACTTGATCCAGTATTTCTCGCGCCGTGAGTTTATGGCGGCGGGCGAACCGGAAGTCGGGGCGATTATGCTTTTTACCGCAATGGATGGCAGCGAAATGCCTGGCGTGATTCGCGAAATCAACGGCGACTCGATTACCGTTGATTTTAACCATCCGCTGGCCGGGCATACCGTTCACTTTGATATTGAAGTGCTGGAAATCGATCCGGCGCTGGAGGCATAA", "blast_result": {"qseqid": "NZ_AOXE01000059.1_94|1542171267", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.77799999999999, "length": 450, "mismatch": 1, "gapopen": 0, "qstart": 1, "qend": 450, "sstart": 57341, "send": 57790, "evalue": 0.0, "bitscore": 826.0, "qlen": 450, "slen": 699860, "sseq": "ATGTCTAAATCCGTACAGAGCAACAGCGCGATCCTCGTTCACTTCACCCTGAAACTGGATGATGGCTCAACGGCGGAATCTACCCGCAATAACGGCAAGCCAGCCCTGTTCCGTCTTGGCGATACCTCGCTTTCCGAAGGTCTGGAGCAGCAGCTTCTGGGGTTGAAAGAAGGGGAAAAGAAAGCGTTTTCGCTGGAGCCTGACGCCGCGTTTGGCGTCCCCAGTCCGGACTTGATCCAGTATTTCTCGCGCCGTGAGTTTATGGCGGCGGGCGAACCGGAAGTCGGGGCGATTATGCTTTTTACCGCAATGGATGGCAGCGAAATGCCTGGCGTGATTCGCGAAATCAACGGCGACTCGATTACCGTTGATTTTAACCATCCGCTGGCCGGGCATACCGTTCACTTTGATATTGAAGTGCTGGAAATCGATCCGGCGCTGGAGGCATAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000059.1_94", "allele": 1542171267, "is_match": true, "allele_name": 1175502179, "is_perfect": false, "has_perfect_match": false, "start_idx": 57340.0, "end_idx": 57789.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000059.1_9": {"name": 2978539204, "seq": "ATGGAAAAACAACGCGGTTTCACGCTTATCGAACTGATGGTCGTTATTGGCATCATCGCCATTTTAAGCGCCATTGGCATTCCGGCTTACCAGAACTATCTGCGTAAAGCGGCGCTGACGGATATGTTGCAAACATTTGTCCCCTACCGTACTGCCGTCGAACTCTGCGCTCTGGAACATGGTGGGACGAGCACATGCGATGCGGGCGTCAACGGTATCCCCTCGCCCGTCATCACCCGTTATGTTTCGGGCATGAGCGTGGAAAAAGGCGTCATCACGCTTACCGGTCAGGAGAGTCTGAGCGGGCTTAGCGTCATCATGACGCCCGCCTGGGACAATGCTAACGGCATTACCGGCTGGACGCGTAACTGCAATATTCAAAGCGACAGCGCGTTACAACAGGCTTGTGAAGATGTCTTCCGTTTTGACGCCAACTAA", "blast_result": {"qseqid": "NZ_AOXE01000059.1_9|129319737", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.315, "length": 438, "mismatch": 3, "gapopen": 0, "qstart": 1, "qend": 438, "sstart": 171289, "send": 170852, "evalue": 0.0, "bitscore": 793.0, "qlen": 438, "slen": 699860, "sseq": "ATGGAAAAACAACGCGGTTTCACGCTTATCGAACTGATGGTCGTTATTGGCATCATCGCCATTTTAAGCGCCATTGGCATTCCGGCTTACCAGAACTATCTGCGTAAAGCGGCGCTGACGGATATGTTGCAAACATTTGTCCCCTACCGTACTGCCGTCGAACTCTGCGCTCTGGAACATGGTGGGACGAGCACATGCGATGCGGGCGTCAACGGTATCCCCTCGCCCGTCATCACCCGTTATGTTTCGGGCATGAGCGTGGAAAAAGGCGTCATCACGCTTACCGGTCAGGAGAGTCTGAGCGGGCTTAGCGTCATCATGACGCCCGCCTGGGACAATGCTAACGGCATTACCGGCTGGACGCGTAACTGCAATATTCAAAGCGACAGCGCGTTACAACAGGCTTGTGAAGATGTCTTCCGTTTTGACGCCAACTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000059.1_9", "allele": 129319737, "is_match": true, "allele_name": 2978539204, "is_perfect": false, "has_perfect_match": false, "start_idx": 170851.0, "end_idx": 171288.0, "needs_revcomp": true, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOYI01000008.1_9": {"name": 3646345463, "seq": "ATGATTGCCATCTCCCGGACGGTCTCCATAGCCGATAATGAGCTGGAAATTACGGCCATTCGCGCGCAGGGCGCGGGTGGTCAGCACGTAAATAAGACCTCTAGCGCGATTCATTTGCGCTTTGACATTCGGGCCTCTGGCCTGCCAGAGTATTATAAACAGCGTTTGCTGACGGCCAGCCACCATCTGATAAGCGATGATGGCGTCATTATCATTAAGGCGCAGGAGTTCCGGAGCCAGGAGCTCAACCGGGAAGCGGCTATCGCCAGGCTGGTTGCCGTCATAAAAGAATTAACCGCGGAGCAGAAAAGCCGTCGCGCAACCCGTCCGACGCGTGCCTCGAAAGAGCGCCGCTTGTCCTCAAAGGCGCAAAAATCTTCTGTAAAGGCGCTTCGCGGCAAAATTCGTCGTCCACTGGATTGA", "blast_result": {"qseqid": "NZ_AOYI01000008.1_9|3646345463", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 100.0, "length": 423, "mismatch": 0, "gapopen": 0, "qstart": 1, "qend": 423, "sstart": 278816, "send": 279238, "evalue": 0.0, "bitscore": 782.0, "qlen": 423, "slen": 699860, "sseq": "ATGATTGCCATCTCCCGGACGGTCTCCATAGCCGATAATGAGCTGGAAATTACGGCCATTCGCGCGCAGGGCGCGGGTGGTCAGCACGTAAATAAGACCTCTAGCGCGATTCATTTGCGCTTTGACATTCGGGCCTCTGGCCTGCCAGAGTATTATAAACAGCGTTTGCTGACGGCCAGCCACCATCTGATAAGCGATGATGGCGTCATTATCATTAAGGCGCAGGAGTTCCGGAGCCAGGAGCTCAACCGGGAAGCGGCTATCGCCAGGCTGGTTGCCGTCATAAAAGAATTAACCGCGGAGCAGAAAAGCCGTCGCGCAACCCGTCCGACGCGTGCCTCGAAAGAGCGCCGCTTGTCCTCAAAGGCGCAAAAATCTTCTGTAAAGGCGCTTCGCGGCAAAATTCGTCGTCCACTGGATTGA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOYI01000008.1_9", "allele": 3646345463, "is_match": true, "allele_name": 3646345463, "is_perfect": true, "has_perfect_match": true, "start_idx": 278815.0, "end_idx": 279237.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOYL01000006.1_89": {"name": 1109678443, "seq": "ATGCTGATGGAGATAGACATCGTTCAGGCTGGCGCCGCTGTACAGGACGCTATCATCAATGATAAAGCCTTTAAAATGCAGTACGCCAAGCGCTTCTCGCGTATTAATCGGCACGCCGTAAACCGGGACATCAATGCCGGGGTTTTCCTGCGCCAGTCGGCAATACCAGTCTGCATTGGTATTCGAGGCCGCTGCGCCAATGCGCCCGCGTTGCGCGCGATGCCAGTCGACCAGCACCCTCACGTCCAGTTCAGGACGCTGCCGTTTAGCCGCATAGAGCGCGTCGAGTATACCTTTACCCCCATCGTCCTGTTCCAGATACAGGGCAACGATACAAATACGCTGCGTCGCGCTGGCGATTTTCTCCAGCAGTGTCTCCCGAAAAGTAGCAGGAGTATAAAAGAAATCTACATCATCAACTGA", "blast_result": {"qseqid": "NZ_AOYL01000006.1_89|491087478", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.764, "length": 423, "mismatch": 1, "gapopen": 0, "qstart": 1, "qend": 423, "sstart": 296106, "send": 296528, "evalue": 0.0, "bitscore": 776.0, "qlen": 423, "slen": 699860, "sseq": "ATGCTGATGGAGATAGACATCGTTCAGGCTGGCGCCGCTGTACAGGACGCTATCATCAATGATAAAGCCTTTAAAATGCAGTACGCCAAGCGCTTCTCGCGTATTAATCGGCACGCCGTAAACCGGGACATCAATGCCGGGGTTTTCCTGCGCCAGTCGGCAATACCAGTCTGCATTGGTATTCGAGGCCGCTGCGCCAATGCGCCCGCGTTGCGCGCGATGCCAGTCGACCAGCACCCTCACGTCCAGTTCAGGACGCTGCCGTTTAGCCGCATAGAGCGCGTCGAGTATACCTTTACCCCCATCGTCCTGTTCCAGATACAGGGCAACGATACAAATACGCTGCGTCGCGCTGGCGATTTTCTCCAGCAGTGTCTCCCGAAAAGTAGCAGGAGTATAAAAGAAATCTACATCATCAACTGA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOYL01000006.1_89", "allele": 491087478, "is_match": true, "allele_name": 1109678443, "is_perfect": false, "has_perfect_match": false, "start_idx": 296105.0, "end_idx": 296527.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000033.1_14": {"name": 1672513023, "seq": "ATGCTGGGATTAAAACAGGTTCATCACATCGCGATCATTGCGACAGACTATGCGGTGAGCAAGGCGTTTTATTGCGATATTCTGGGGTTCGATCTGCTAAGCGAAGCCTGGCGGGAAGAGCGTGACTCGTGGAAGGGCGATTTGGCGCTAAACGGGCAGTATGTGATTGAGCTTTTCTCTTTTCCCTTCCCTCCGGCGCGTCCAAGCCGACCTGAAGCCTGCGGTCTGCGCCATCTGGCTTTCAGCGTGGAAAATGTGGAAAACGCCGTTGCGCATCTGGAAAAGCATCAGGTTAAGTGCGAACCGATACGCATCGATCCGTATACCGGGAAGCGCTTTACTTTTTTCAACGATCCGGACGGTTTACCGCTTGAGCTGTATGAGCAGTAA", "blast_result": {"qseqid": "NZ_AOXE01000033.1_14|1398671007", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.744, "length": 390, "mismatch": 0, "gapopen": 1, "qstart": 1, "qend": 389, "sstart": 275801, "send": 276190, "evalue": 0.0, "bitscore": 713.0, "qlen": 389, "slen": 699860, "sseq": "ATGCTGGGATTAAAACAGGTTCATCACATCGCGATCATTGCGACAGACTATGCGGTGAGCAAGGCGTTTTATTGCGATATTCTGGGGTTCGATCTGCTAAGCGAAGCCTGGCGGGAAGAGCGTGACTCGTGGAAGGGCGATTTGGCGCTAAACGGGCAGTATGTGATTGAGCTTTTCTCTTTTCCCTTCCCTCCGGCGCGTCCAAGCCGACCTGAAGCCTGCGGTCTGCGCCATCTGGCTTTCAGCGTGGAAAATGTGGAAAACGCCGTTGCGCATCTGGAAAAGCATCAGGTTAAGTGCGAACCGATACGCATCGATCCGTATACCGGGAAGCGCTTTACTTTTTTCAACGATCCGGACGGTTTACCGCTTGAGCTGTATGAGCAGTAA", "coverage": 1.0025706940874035, "is_trunc": false, "marker": "NZ_AOXE01000033.1_14", "allele": 1398671007, "is_match": true, "allele_name": 1672513023, "is_perfect": false, "has_perfect_match": false, "start_idx": 275800.0, "end_idx": 276189.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000052.1_141": {"name": 2084418558, "seq": "ATGATTACAGGTATCCAGATTACTAAAGCCGCTAACGACGACCTGCTGAATTCCTTCTGGCTGCTGGACAGCGAAAAAGGCGAAGCGCGCTGCATCGTTGCAAAATCCGGCTTTGCTGAAGATGAAGTTGTGGCTGTCAGCAAACTGGGCGAGATTGAATACCGTGAAATTCCGATGGAAGTTAAACCGGAAGTACGCGTTGAAGGCGGTCAGCATCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGACGCGGTTAAGCATCCGGAAAAATACCCGCAGCTGACTATTCGTGTTTCTGGTTATGCGGTGCGTTTTAACTCCCTGACGCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTTACCGAAAGCCTGTAA", "blast_result": {"qseqid": "NZ_AOXE01000052.1_141|2084418558", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 100.0, "length": 384, "mismatch": 0, "gapopen": 0, "qstart": 1, "qend": 384, "sstart": 302960, "send": 303343, "evalue": 0.0, "bitscore": 710.0, "qlen": 384, "slen": 699860, "sseq": "ATGATTACAGGTATCCAGATTACTAAAGCCGCTAACGACGACCTGCTGAATTCCTTCTGGCTGCTGGACAGCGAAAAAGGCGAAGCGCGCTGCATCGTTGCAAAATCCGGCTTTGCTGAAGATGAAGTTGTGGCTGTCAGCAAACTGGGCGAGATTGAATACCGTGAAATTCCGATGGAAGTTAAACCGGAAGTACGCGTTGAAGGCGGTCAGCATCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGACGCGGTTAAGCATCCGGAAAAATACCCGCAGCTGACTATTCGTGTTTCTGGTTATGCGGTGCGTTTTAACTCCCTGACGCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTTACCGAAAGCCTGTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000052.1_141", "allele": 2084418558, "is_match": true, "allele_name": 2084418558, "is_perfect": true, "has_perfect_match": true, "start_idx": 302959.0, "end_idx": 303342.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000033.1_38": {"name": 1314942441, "seq": "ATGTATGACAATCTAAAAAGTCTGGGCATTACCAATCCTGAGGAAATCGATCGTTACAGCCTGCGGCAAGAAGCCAATAACGATATCCTGAAAATCTATTTTCAAAAGGATAGAGGTGAATTCTTTGCTAAAAGCGTGAAGTTTAAGTATCCACGCCAGCGTAAAACGGTGGTGGCTGATGGCATCGGTCAGGGTTATAAAGAAGTACAGGAGATTAGCCCTAACCTACGCTATGTGATTGACGAGCTGGACCAAATCTGCCAGCGCGACCGCTCAGAACTCGATCTCAAACGTAAGATCCTCGACGACTTGCGCCATCTGGAAAGCGTCGTCGCGAATAAGATCAGTGAAATCGAAGCCGATCTGGACAAGCTTACCCGTAAGTAA", "blast_result": {"qseqid": "NZ_AOXE01000033.1_38|1182368253", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.742, "length": 387, "mismatch": 1, "gapopen": 0, "qstart": 1, "qend": 387, "sstart": 244703, "send": 244317, "evalue": 0.0, "bitscore": 710.0, "qlen": 387, "slen": 699860, "sseq": "ATGTATGACAATCTAAAAAGTCTGGGCATTACCAATCCTGAGGAAATCGATCGTTACAGCCTGCGGCAAGAAGCCAATAACGATATCCTGAAAATCTATTTTCAAAAGGATAGAGGTGAATTCTTTGCTAAAAGCGTGAAGTTTAAGTATCCACGCCAGCGTAAAACGGTGGTGGCTGATGGCATCGGTCAGGGTTATAAAGAAGTACAGGAGATTAGCCCTAACCTACGCTATGTGATTGACGAGCTGGACCAAATCTGCCAGCGCGACCGCTCAGAACTCGATCTCAAACGTAAGATCCTCGACGACTTGCGCCATCTGGAAAGCGTCGTCGCGAATAAGATCAGTGAAATCGAAGCCGATCTGGACAAGCTTACCCGTAAGTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000033.1_38", "allele": 1182368253, "is_match": true, "allele_name": 1314942441, "is_perfect": false, "has_perfect_match": false, "start_idx": 244316.0, "end_idx": 244702.0, "needs_revcomp": true, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000059.1_67": {"name": 625241463, "seq": "ATGATCAATTCGCCCAGAGTGTGTATTCAGGTGCAAAGCGTCTACATTGAGGCGCAATCCTCACCTGACGATGAACGTTACGTTTTTGCCTATACCGTAACCATCCGCAATCTGGGTCGGGCGCCAGTGCAGCTATTGGGCCGCTACTGGCTGATTACCAATGGTCATGGCCGTGAAACTGAAGTCCAGGGCAAAGGTGTGGTTGGCGTCCAGCCGCGCATTGCGCCTGGCGAAGAGTATCAGTACACCGGCGGCGCGGTAATTGAAACGCCGCTGGGCACCATGCAGGGTCATTACGAAATGATCGATGAAAATGGCGACGCCTTTACCATCGACATTCCCGTGTTTCGACTCGCCGTCCCTACACTCATTCACTAA", "blast_result": {"qseqid": "NZ_AOXE01000059.1_67|2318122041", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 98.94200000000001, "length": 378, "mismatch": 4, "gapopen": 0, "qstart": 1, "qend": 378, "sstart": 102455, "send": 102078, "evalue": 0.0, "bitscore": 676.0, "qlen": 378, "slen": 699860, "sseq": "ATGATCAATTCGCCCAGAGTGTGTATTCAGGTGCAAAGCGTCTACATTGAGGCGCAATCCTCACCTGACGATGAACGTTACGTTTTTGCCTATACCGTAACCATCCGCAATCTGGGTCGGGCGCCAGTGCAGCTATTGGGCCGCTACTGGCTGATTACCAATGGTCATGGCCGTGAAACTGAAGTCCAGGGCAAAGGTGTGGTTGGCGTCCAGCCGCGCATTGCGCCTGGCGAAGAGTATCAGTACACCGGCGGCGCGGTAATTGAAACGCCGCTGGGCACCATGCAGGGTCATTACGAAATGATCGATGAAAATGGCGACGCCTTTACCATCGACATTCCCGTGTTTCGACTCGCCGTCCCTACACTCATTCACTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000059.1_67", "allele": 2318122041, "is_match": true, "allele_name": 625241463, "is_perfect": false, "has_perfect_match": false, "start_idx": 102077.0, "end_idx": 102454.0, "needs_revcomp": true, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000059.1_35": {"name": 1052128508, "seq": "ATGATCAGCAGAGTGACAGAAGCCCTAAGCAAAGTTAAGGGATCGATAGGAAGCAACGAGCGCCATGCCTTGCCTGGCGTGATCGGTGACGATCTTTTGCGGTTCGGGAAGCTGCCACTCTGCTTGTTCATTTGCATCATTTTAACGGCGGTGACGGTGGTCACGACGGCGCACCATACTCGTTTACTCACCGCTCAGCGTGAACAACTGGTTCTGGAGCGCGATGCATTGGACATTGAATGGCGCAACCTGATCCTTGAAGAAAATGCGCTCGGCGATCACAGCCGGGTAGAGCGGATCGCAACGGAAAAGCTGCAAATGCAGCATGTTGATCCGTCCCAAGAAAATATCGTAGTGCAAAAATAA", "blast_result": {"qseqid": "NZ_AOXE01000059.1_35|3353355135", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.454, "length": 366, "mismatch": 2, "gapopen": 0, "qstart": 1, "qend": 366, "sstart": 142751, "send": 143116, "evalue": 0.0, "bitscore": 665.0, "qlen": 366, "slen": 699860, "sseq": "ATGATCAGCAGAGTGACAGAAGCCCTAAGCAAAGTTAAGGGATCGATAGGAAGCAACGAGCGCCATGCCTTGCCTGGCGTGATCGGTGACGATCTTTTGCGGTTCGGGAAGCTGCCACTCTGCTTGTTCATTTGCATCATTTTAACGGCGGTGACGGTGGTCACGACGGCGCACCATACTCGTTTACTCACCGCTCAGCGTGAACAACTGGTTCTGGAGCGCGATGCATTGGACATTGAATGGCGCAACCTGATCCTTGAAGAAAATGCGCTCGGCGATCACAGCCGGGTAGAGCGGATCGCAACGGAAAAGCTGCAAATGCAGCATGTTGATCCGTCCCAAGAAAATATCGTAGTGCAAAAATAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000059.1_35", "allele": 3353355135, "is_match": true, "allele_name": 1052128508, "is_perfect": false, "has_perfect_match": false, "start_idx": 142750.0, "end_idx": 143115.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000052.1_36": {"name": 469721942, "seq": "ATGATTACCCTCTATGGCATTAAGAATTGCGACACGATCAAAAAAGCGCGCCGTTGGCTGGAGGAGCATGGCATTGATTATCGTTTTCACGATTACCGTGTGGATGGCATAGACCTCCCTCTTCTTAATACCTTTATTGCCGAACTCGGCTGGCAGCCTTTACTGAATACGCGCGGCACAACATGGCGCAAACTGGATGAAGGCCACCGCAGCGGGATTACCGATGCCGACTCCGCCGCTGCTCTCATGGTTGAACAGCCGGCAATCATCAAACGCCCATTGCTCTGCGCGCCCGGGAAGCCTATGCTGCTTGGTTTCAGTGAATCCCGTTATCAGCAGTTTTTTGATGAGGTGTAG", "blast_result": {"qseqid": "NZ_AOXE01000052.1_36|2528454351", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.44, "length": 357, "mismatch": 2, "gapopen": 0, "qstart": 1, "qend": 357, "sstart": 447202, "send": 446846, "evalue": 0.0, "bitscore": 649.0, "qlen": 357, "slen": 699860, "sseq": "ATGATTACCCTCTATGGCATTAAGAATTGCGACACGATCAAAAAAGCGCGCCGTTGGCTGGAGGAGCATGGCATTGATTATCGTTTTCACGATTACCGTGTGGATGGCATAGACCTCCCTCTTCTTAATACCTTTATTGCCGAACTCGGCTGGCAGCCTTTACTGAATACGCGCGGCACAACATGGCGCAAACTGGATGAAGGCCACCGCAGCGGGATTACCGATGCCGACTCCGCCGCTGCTCTCATGGTTGAACAGCCGGCAATCATCAAACGCCCATTGCTCTGCGCGCCCGGGAAGCCTATGCTGCTTGGTTTCAGTGAATCCCGTTATCAGCAGTTTTTTGATGAGGTGTAG", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000052.1_36", "allele": 2528454351, "is_match": true, "allele_name": 469721942, "is_perfect": false, "has_perfect_match": false, "start_idx": 446845.0, "end_idx": 447201.0, "needs_revcomp": true, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000052.1_92": {"name": 398274060, "seq": "ATGCCGAAGATTGTTATTCTGCCTCATCAGGATCTTTGTCCGGATGGCGCAGTTCTGGAAGCTGAGACCGGTGAAACCATTCTTGACGTTGCGCTGCGCAACGGCATCGAGATTGAACACGCCTGTGAGAAATCGTGCGCCTGCACCACCTGTCACTGTATTGTACGTGAAGGCTTCGACTCCTTGCCGGAAAGTTCGGAAGAAGAAGACGATATGCTGGATAAAGCGTGGGGGCTGGAGCCGGAAAGTCGACTGAGCTGCCAGGCCCGCGTTACCGACGACGATCTGGTTATCGAAATTCCACGTTACACAATCAACCATGCGCGTGAGCATTAA", "blast_result": {"qseqid": "NZ_AOXE01000052.1_92|398274060", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 100.0, "length": 336, "mismatch": 0, "gapopen": 0, "qstart": 1, "qend": 336, "sstart": 362626, "send": 362961, "evalue": 1.6899999999999992e-179, "bitscore": 621.0, "qlen": 336, "slen": 699860, "sseq": "ATGCCGAAGATTGTTATTCTGCCTCATCAGGATCTTTGTCCGGATGGCGCAGTTCTGGAAGCTGAGACCGGTGAAACCATTCTTGACGTTGCGCTGCGCAACGGCATCGAGATTGAACACGCCTGTGAGAAATCGTGCGCCTGCACCACCTGTCACTGTATTGTACGTGAAGGCTTCGACTCCTTGCCGGAAAGTTCGGAAGAAGAAGACGATATGCTGGATAAAGCGTGGGGGCTGGAGCCGGAAAGTCGACTGAGCTGCCAGGCCCGCGTTACCGACGACGATCTGGTTATCGAAATTCCACGTTACACAATCAACCATGCGCGTGAGCATTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000052.1_92", "allele": 398274060, "is_match": true, "allele_name": 398274060, "is_perfect": true, "has_perfect_match": true, "start_idx": 362625.0, "end_idx": 362960.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000052.1_23": {"name": 1638162324, "seq": "ATGAATAAAGAACGCATTATTCAGGAATTTGTGCCGGGCAAACAGGTCACGCTGGCGCATCTCATTGCGCACCCTGGTGAAGAACTGGCGAAAAAGATCGGCGTTCCCGATGCTGGCGCGATTGGCATTATGACCTTAACGCCGGGGGAAACGGCCATGATCGCTGGCGATTTAGCGATGAAGGCTGCGGATGTACACATCGGTTTTCTCGACAGATTTAGCGGCGCGCTGGTGATTTATGGCACCGTCGGCGCAGTAGAAGAAGCGCTATTACAGACGGTCAGCGGGCTGGGGCGATTATTAAACTTCACCCTGTGTGAGTTAACAAAAAGTTAA", "blast_result": {"qseqid": "NZ_AOXE01000052.1_23|1638162324", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 100.0, "length": 336, "mismatch": 0, "gapopen": 0, "qstart": 1, "qend": 336, "sstart": 465655, "send": 465990, "evalue": 1.6899999999999992e-179, "bitscore": 621.0, "qlen": 336, "slen": 699860, "sseq": "ATGAATAAAGAACGCATTATTCAGGAATTTGTGCCGGGCAAACAGGTCACGCTGGCGCATCTCATTGCGCACCCTGGTGAAGAACTGGCGAAAAAGATCGGCGTTCCCGATGCTGGCGCGATTGGCATTATGACCTTAACGCCGGGGGAAACGGCCATGATCGCTGGCGATTTAGCGATGAAGGCTGCGGATGTACACATCGGTTTTCTCGACAGATTTAGCGGCGCGCTGGTGATTTATGGCACCGTCGGCGCAGTAGAAGAAGCGCTATTACAGACGGTCAGCGGGCTGGGGCGATTATTAAACTTCACCCTGTGTGAGTTAACAAAAAGTTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000052.1_23", "allele": 1638162324, "is_match": true, "allele_name": 1638162324, "is_perfect": true, "has_perfect_match": true, "start_idx": 465654.0, "end_idx": 465989.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000052.1_115": {"name": 1528212814, "seq": "ATGAAAAAGATTGATGCGATTATTAAACCCTTCAAGCTGGACGATGTCCGTGAAGCGCTGGCCGAGGTAGGTATTACCGGTATGACGGTCACTGAAGTCAAAGGCTTTGGCCGTCAAAAAGGCCACACCGAGCTGTATCGCGGCGCGGAATATATGGTGGATTTTCTGCCGAAGGTAAAAATTGAAATCGTTGTGCCTGACGACATCGTGGATACCTGTGTTGATACCATCATTCGTACCGCGCAGACGGGGAAAATCGGCGACGGTAAGATCTTTGTCTTTGATGTCGCCCGCGTTATTCGTATCCGTACTGGCGAAGAAGACGACGCGGCTATCTGA", "blast_result": {"qseqid": "NZ_AOXE01000052.1_115|1690857727", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.705, "length": 339, "mismatch": 1, "gapopen": 0, "qstart": 1, "qend": 339, "sstart": 336765, "send": 337103, "evalue": 1.6999999999999992e-179, "bitscore": 621.0, "qlen": 339, "slen": 699860, "sseq": "ATGAAAAAGATTGATGCGATTATTAAACCCTTCAAGCTGGACGATGTCCGTGAAGCGCTGGCCGAGGTAGGTATTACCGGTATGACGGTCACTGAAGTCAAAGGCTTTGGCCGTCAAAAAGGCCACACCGAGCTGTATCGCGGCGCGGAATATATGGTGGATTTTCTGCCGAAGGTAAAAATTGAAATCGTTGTGCCTGACGACATCGTGGATACCTGTGTTGATACCATCATTCGTACCGCGCAGACGGGGAAAATCGGCGACGGTAAGATCTTTGTCTTTGATGTCGCCCGCGTTATTCGTATCCGTACTGGCGAAGAAGACGACGCGGCTATCTGA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000052.1_115", "allele": 1690857727, "is_match": true, "allele_name": 1528212814, "is_perfect": false, "has_perfect_match": false, "start_idx": 336764.0, "end_idx": 337102.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000031.1_80": {"name": 2955003506, "seq": "ATGAGTAAATGCAGTGCTGATGAAACCCCGGTTTGCTGCTGTATGGACGTTGGAACCATCATGGACAACTCCGATTGCACCGCGTCATACAGCCGCGTATTCGCTACCCGCGCAGAGGCTGAAGAGACGCTGGCGGCGTTAACCGAAAAAGCGCGTAGCGTGGAGTCTGAACCTTGCCAAATTACGCCAACCTTTACCGAGGAATCCGAAGGCGTTCGTCTGGATATTGATTTTGTTTTCGCCTGCGAAGCAGAAACGCTGATCTTCCAGCTCGGCCTGCGTTAA", "blast_result": {"qseqid": "NZ_AOXE01000031.1_80|2955003506", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 100.0, "length": 285, "mismatch": 0, "gapopen": 0, "qstart": 1, "qend": 285, "sstart": 547719, "send": 548003, "evalue": 3.18e-151, "bitscore": 527.0, "qlen": 285, "slen": 699860, "sseq": "ATGAGTAAATGCAGTGCTGATGAAACCCCGGTTTGCTGCTGTATGGACGTTGGAACCATCATGGACAACTCCGATTGCACCGCGTCATACAGCCGCGTATTCGCTACCCGCGCAGAGGCTGAAGAGACGCTGGCGGCGTTAACCGAAAAAGCGCGTAGCGTGGAGTCTGAACCTTGCCAAATTACGCCAACCTTTACCGAGGAATCCGAAGGCGTTCGTCTGGATATTGATTTTGTTTTCGCCTGCGAAGCAGAAACGCTGATCTTCCAGCTCGGCCTGCGTTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000031.1_80", "allele": 2955003506, "is_match": true, "allele_name": 2955003506, "is_perfect": true, "has_perfect_match": true, "start_idx": 547718.0, "end_idx": 548002.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000033.1_12": {"name": 2666669453, "seq": "ATGTCAATGAATGAAACGTATCAACCCATTAATTGCGATGACTACGATAGTCTTGAGCTTGCCTGCATGCATCATTTAATACTGACGCTAACGTTAAAAGATGGCGAGGTTTTGCAGGCAAAAGCGAACGATTTGATCTTACGTAAAAACGTAGAGTATCTGCTTGCCGAGGTTTCCGGCGAGTCTTGTGAACTTCGTCTCGATAAAATCGCCAGTTTCAGCCACCCGGAAATTGGTACCGTGGTAGTTAGCGAATCCTGA", "blast_result": {"qseqid": "NZ_AOXE01000033.1_12|1715120686", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.617, "length": 261, "mismatch": 1, "gapopen": 0, "qstart": 1, "qend": 261, "sstart": 277889, "send": 277629, "evalue": 2.9499999999999993e-136, "bitscore": 477.0, "qlen": 261, "slen": 699860, "sseq": "ATGTCAATGAATGAAACGTATCAACCCATTAATTGCGATGACTACGATAGTCTTGAGCTTGCCTGCATGCATCATTTAATACTGACGCTAACGTTAAAAGATGGCGAGGTTTTGCAGGCAAAAGCGAACGATTTGATCTTACGTAAAAACGTAGAGTATCTGCTTGCCGAGGTTTCCGGCGAGTCTTGTGAACTTCGTCTCGATAAAATCGCCAGTTTCAGCCACCCGGAAATTGGTACCGTGGTAGTTAGCGAATCCTGA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000033.1_12", "allele": 1715120686, "is_match": true, "allele_name": 2666669453, "is_perfect": false, "has_perfect_match": false, "start_idx": 277628.0, "end_idx": 277888.0, "needs_revcomp": true, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000083.1_45": {"name": 1328452594, "seq": "ATGGAATGGTTGGTTAAGAAATCGCATTATGTCAAAAAGAGGGCGTGCCATGTTCTGGTGCTGTGCGATAGCGGCGGTTCGCTAAAAATGATCGCCGAGGCGAATTCCATGATATTACTGAGTCCCGGCGATATCCTGTCGCCTTTACAGGATGCGCAGTATTGTATTAATCGGGAAAAACACCAGACCTTAAAAATCGTTGATGCACGCTGTTATTCCTGCGACGAATGGCAGCGGTTGACGCGCAAGCCATTATGA", "blast_result": {"qseqid": "NZ_AOXE01000083.1_45|1328452594", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 100.0, "length": 258, "mismatch": 0, "gapopen": 0, "qstart": 1, "qend": 258, "sstart": 635546, "send": 635803, "evalue": 2.919999999999999e-136, "bitscore": 477.0, "qlen": 258, "slen": 699860, "sseq": "ATGGAATGGTTGGTTAAGAAATCGCATTATGTCAAAAAGAGGGCGTGCCATGTTCTGGTGCTGTGCGATAGCGGCGGTTCGCTAAAAATGATCGCCGAGGCGAATTCCATGATATTACTGAGTCCCGGCGATATCCTGTCGCCTTTACAGGATGCGCAGTATTGTATTAATCGGGAAAAACACCAGACCTTAAAAATCGTTGATGCACGCTGTTATTCCTGCGACGAATGGCAGCGGTTGACGCGCAAGCCATTATGA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000083.1_45", "allele": 1328452594, "is_match": true, "allele_name": 1328452594, "is_perfect": true, "has_perfect_match": true, "start_idx": 635545.0, "end_idx": 635802.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000031.1_70": {"name": 225275747, "seq": "ATGATCTATTTATGGACATTTCTTGCAATAAGTATACTTGCCGTGAGTGGCTATATCGGTCAGGTGATGGGGGCTTTTTCTGCGGTTTCTTCTTTTACGGGAATGGTTATCCTTGCCGCGCTGATTTATTTACTCAATGTATGGCTGCAGGATGGCGATGACATCGTTAGCGGATTATTGCTTTTTCTCGCACCGGCATGTGGGTTAATTATTCGCTTTATGGTGGGATACGGTAAGCGTTAG", "blast_result": {"qseqid": "NZ_AOXE01000031.1_70|225275747", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 100.0, "length": 243, "mismatch": 0, "gapopen": 0, "qstart": 1, "qend": 243, "sstart": 530773, "send": 531015, "evalue": 5.959999999999998e-128, "bitscore": 449.0, "qlen": 243, "slen": 699860, "sseq": "ATGATCTATTTATGGACATTTCTTGCAATAAGTATACTTGCCGTGAGTGGCTATATCGGTCAGGTGATGGGGGCTTTTTCTGCGGTTTCTTCTTTTACGGGAATGGTTATCCTTGCCGCGCTGATTTATTTACTCAATGTATGGCTGCAGGATGGCGATGACATCGTTAGCGGATTATTGCTTTTTCTCGCACCGGCATGTGGGTTAATTATTCGCTTTATGGTGGGATACGGTAAGCGTTAG", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000031.1_70", "allele": 225275747, "is_match": true, "allele_name": 225275747, "is_perfect": true, "has_perfect_match": true, "start_idx": 530772.0, "end_idx": 531014.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000059.1_72": {"name": 2229984332, "seq": "ATGCAAAAACGTCTTATGACCGCACTGTTTACCGCAGCAACACTATTCACCGTCGCAGGATGCTCTTCTAACCAGGCGGTTGAAACCACGGATGGCAAAACTATTGTCACCGACGGGAAACCCGAGGTCGATAACGATACCGGTATGGTGTCTTACAAAAACGCCGCCACCGGGAAAACCGAACAGATTAACCGCGATCAGCTGAAAAATATGAGCGAGCTGGATAATTAA", "blast_result": {"qseqid": "NZ_AOXE01000059.1_72|2229984332", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 100.0, "length": 231, "mismatch": 0, "gapopen": 0, "qstart": 1, "qend": 231, "sstart": 93416, "send": 93646, "evalue": 2.639999999999999e-121, "bitscore": 427.0, "qlen": 231, "slen": 699860, "sseq": "ATGCAAAAACGTCTTATGACCGCACTGTTTACCGCAGCAACACTATTCACCGTCGCAGGATGCTCTTCTAACCAGGCGGTTGAAACCACGGATGGCAAAACTATTGTCACCGACGGGAAACCCGAGGTCGATAACGATACCGGTATGGTGTCTTACAAAAACGCCGCCACCGGGAAAACCGAACAGATTAACCGCGATCAGCTGAAAAATATGAGCGAGCTGGATAATTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000059.1_72", "allele": 2229984332, "is_match": true, "allele_name": 2229984332, "is_perfect": true, "has_perfect_match": true, "start_idx": 93415.0, "end_idx": 93645.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000033.1_11": {"name": 2353669245, "seq": "GTGGAAAAATATTGTGAGTTAGTACGCAAGCGGTATGCGGAAATCGCCAGCGGAGACTTAGGGTATGTCCCGGATGCGCTGGGTTGTGTATTGAAAGTGCTTAATGAAGTGGCGGCAGATAGCGCCCTTTCAGAGTCGGTCAGGGAAAAGGCAGCTTATGCTGCCGCGAACTTACTGGTGAGCGATTATGTCAATGAATGA", "blast_result": {"qseqid": "NZ_AOXE01000033.1_11|2353669245", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 100.0, "length": 201, "mismatch": 0, "gapopen": 0, "qstart": 1, "qend": 201, "sstart": 278076, "send": 277876, "evalue": 1.0799999999999998e-104, "bitscore": 372.0, "qlen": 201, "slen": 699860, "sseq": "GTGGAAAAATATTGTGAGTTAGTACGCAAGCGGTATGCGGAAATCGCCAGCGGAGACTTAGGGTATGTCCCGGATGCGCTGGGTTGTGTATTGAAAGTGCTTAATGAAGTGGCGGCAGATAGCGCCCTTTCAGAGTCGGTCAGGGAAAAGGCAGCTTATGCTGCCGCGAACTTACTGGTGAGCGATTATGTCAATGAATGA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000033.1_11", "allele": 2353669245, "is_match": true, "allele_name": 2353669245, "is_perfect": true, "has_perfect_match": true, "start_idx": 277875.0, "end_idx": 278075.0, "needs_revcomp": true, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000052.1_38": {"name": 1317894045, "seq": "ATGGACTGGCTGGCAAAATATTGGTGGATTCTGGTATTGGTGTTTCTGGTAGGCGTACTGCTGAATGTGATCAAAGATCTCAAACGCATCGACCATAAGAAATTCCTTGCCAACAAACCTGAGCTGCCCCCGCATCGCGATTTTAACGATAAGTGGGACGATGAAGACGACTGGCCGAAGAAAGATCAGCCGAAAAAGTAA", "blast_result": {"qseqid": "NZ_AOXE01000052.1_38|1319443396", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.50200000000001, "length": 201, "mismatch": 1, "gapopen": 0, "qstart": 1, "qend": 201, "sstart": 445687, "send": 445487, "evalue": 5.039999999999999e-103, "bitscore": 366.0, "qlen": 201, "slen": 699860, "sseq": "ATGGACTGGCTGGCAAAATATTGGTGGATTCTGGTATTGGTGTTTCTGGTAGGCGTACTGCTGAATGTGATCAAAGATCTCAAACGCATCGACCATAAGAAATTCCTTGCCAACAAACCTGAGCTGCCCCCGCATCGCGATTTTAACGATAAGTGGGACGATGAAGACGACTGGCCGAAGAAAGATCAGCCGAAAAAGTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000052.1_38", "allele": 1319443396, "is_match": true, "allele_name": 1317894045, "is_perfect": false, "has_perfect_match": false, "start_idx": 445486.0, "end_idx": 445686.0, "needs_revcomp": true, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000059.1_15": {"name": 3950769715, "seq": "ATGTCTGACGTGACCGTCGTAAACTGTCCGACCTGCGGTAAACCGGTCGTCTGGGGGGAAATTAGCCCCTTCCGCCCATTTTGTTCTAAACGCTGTCAGTTAATTGATTTGGGCGAATGGGCCGCCGAAGAGAAACGAATCGCCAGCAGCGGCGACCAGTCTGATAGCGACGACTGGAGCGAAGAGCGCTAA", "blast_result": {"qseqid": "NZ_AOXE01000059.1_15|71717843", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.479, "length": 192, "mismatch": 1, "gapopen": 0, "qstart": 1, "qend": 192, "sstart": 165592, "send": 165401, "evalue": 4.8299999999999996e-98, "bitscore": 350.0, "qlen": 192, "slen": 699860, "sseq": "ATGTCTGACGTGACCGTCGTAAACTGTCCGACCTGCGGTAAACCGGTCGTCTGGGGGGAAATTAGCCCCTTCCGCCCATTTTGTTCTAAACGCTGTCAGTTAATTGATTTGGGCGAATGGGCCGCCGAAGAGAAACGAATCGCCAGCAGCGGCGACCAGTCTGATAGCGACGACTGGAGCGAAGAGCGCTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000059.1_15", "allele": 71717843, "is_match": true, "allele_name": 3950769715, "is_perfect": false, "has_perfect_match": false, "start_idx": 165400.0, "end_idx": 165591.0, "needs_revcomp": true, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000073.1_98": {"name": null, "seq": null, "blast_result": {"qseqid": "NZ_AOXE01000073.1_98|1638612209", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 100.0, "length": 99, "mismatch": 0, "gapopen": 0, "qstart": 286, "qend": 384, "sstart": 280686, "send": 280588, "evalue": 1.0899999999999999e-47, "bitscore": 183.0, "qlen": 384, "slen": 699860, "sseq": "TTTATTGTCTATGGAAAACCCCCAGCTAGGCTGGGGGTTCCGGAAAGCTTTCAGCTTTAAGCCAGTTATTAAAACCCCTTTTGATTTGTTAAAACATCT", "coverage": 0.2578125, "is_trunc": false, "marker": "NZ_AOXE01000073.1_98", "allele": 1638612209, "is_match": false, "allele_name": 1207191677, "is_perfect": false, "has_perfect_match": false, "start_idx": 280587.0, "end_idx": 280970.0, "needs_revcomp": true, "trunc": false, "is_extended": true, "sseq_msa_gaps": 69, "sseq_msa_p_gaps": 0.16546762589928057, "too_many_gaps": true, "qseq_msa": "---atggtcgttgacagactgagaaccgatcttctcaacaagc---------tgataaacgcgcgtatcgatcttgccgcttatctgca----attgcgaaaagcgaaggggtatatgtcagtcagcgaaagtgacactctgcgtgacaatttttttgaactgaatcgc--------------gagctccacgatcacgctttacggcagggactgcatctcgatcaggaagagtggaa--cgcgctgcgccgtgccgaaggcgcgcttgcagccgccgccgtttgtttaatgagcggacaccatg-attgtccga---cctttattgtctatggaaaacccccagctaggctgggggttccggaaagctttcagctttaagccagttattaaaaccccttttgatttgttaaaacatct", "qseq_msa_trimmed": "atggtcgttgacagactgagaaccgatcttctcaacaagc---------tgataaacgcgcgtatcgatcttgccgcttatctgca----attgcgaaaagcgaaggggtatatgtcagtcagcgaaagtgacactctgcgtgacaatttttttgaactgaatcgc--------------gagctccacgatcacgctttacggcagggactgcatctcgatcaggaagagtggaa--cgcgctgcgccgtgccgaaggcgcgcttgcagccgccgccgtttgtttaatgagcggacaccatg-attgtccga---cctttattgtctatggaaaacccccagctaggctgggggttccggaaagctttcagctttaagccagttattaaaaccccttttgatttgttaaaacatct", "sseq_msa": "gcgcagggcattgaagtgctgatggacgatcgt---aaagagcgcccgggcgtgatgtttgccgatatggagctgattggtattccacatactatcgtgattggcga-------------------------tcgcaacctggataacgacgatattgagtataaataccgtcgtagcggtgaaaaatcgctgattaaaaccggcgatatcgttgattatctggtcaaggcgattaaaggctaaacgacattttgttgggattgc--------ccggcgccatccggcagatatgtaaaggcctcgcaccctgcgaggccttttattgtctatggaaaacccccagctaggctgggggttccggaaagctttcagctttaagccagttattaaaaccccttttgatttgttaaaacatct", "sseq_msa_trimmed": "cagggcattgaagtgctgatggacgatcgt---aaagagcgcccgggcgtgatgtttgccgatatggagctgattggtattccacatactatcgtgattggcga-------------------------tcgcaacctggataacgacgatattgagtataaataccgtcgtagcggtgaaaaatcgctgattaaaaccggcgatatcgttgattatctggtcaaggcgattaaaggctaaacgacattttgttgggattgc--------ccggcgccatccggcagatatgtaaaggcctcgcaccctgcgaggccttttattgtctatggaaaacccccagctaggctgggggttccggaaagctttcagctttaagccagttattaaaaccccttttgatttgttaaaacatct"}}, "NZ_AOXE01000072.1_60": {"name": null, "seq": null, "blast_result": {"qseqid": "NZ_AOXE01000072.1_60|3292167024", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 97.93799999999999, "length": 97, "mismatch": 2, "gapopen": 0, "qstart": 1, "qend": 97, "sstart": 444048, "send": 443952, "evalue": 4.4699999999999995e-43, "bitscore": 169.0, "qlen": 556, "slen": 699860, "sseq": "GCCCACGGGGGGCAATCACCGTCGCCACGCCGGGCGGCATTTCACGTAAACGCGATAAGATAGCCGCCTGCTCCGGCTGCGGCTCGCCGGTGGCGGG", "coverage": 0.17446043165467626, "is_trunc": false, "marker": "NZ_AOXE01000072.1_60", "allele": 3292167024, "is_match": false, "allele_name": 352660237, "is_perfect": false, "has_perfect_match": false, "start_idx": 443492.0, "end_idx": 444047.0, "needs_revcomp": true, "trunc": false, "is_extended": true, "sseq_msa_gaps": 176, "sseq_msa_p_gaps": 0.27804107424960506, "too_many_gaps": true, "qseq_msa": "gcccacggggggcaatcaccgtcgccacgccgggcggcatttcacgtaaacgcgataagatagccgcctgctccggctgcggctcgccgggggggggggg------------------------------gcaaatgagttaatactggcggcatggcggc--ttaagaacggagaaaaggagtgtattcaaaactcactgacgcagctgtggctgcgtcagtggcgccgactgccgcaagtagcgtatttactcggttgccataaactgagagccg-----------------------------atctggcaaggcagggagccttgcttggcctgccggattgggcgcaagcatttttggcaatgcatcagggaacaagtttatctgtctgcaataaggcgccgaatcaccggtttttacttagcgtcgggtat-gcacagttaaat----gccctaaatgaatttttacctgaatctttagcacagcgttttcctttgctttttcctccatttattgaggaggcattgaagcaggatgctgtagaaatgtcaattttgctactggccttacaatatg-----------ctcaaaaatatcccaataccgtccccgctttcgcctgttga----------------------", "qseq_msa_trimmed": "gcccacggggggcaatcaccgtcgccacgccgggcggcatttcacgtaaacgcgataagatagccgcctgctccggctgcggctcgccgggggggggggg------------------------------gcaaatgagttaatactggcggcatggcggc--ttaagaacggagaaaaggagtgtattcaaaactcactgacgcagctgtggctgcgtcagtggcgccgactgccgcaagtagcgtatttactcggttgccataaactgagagccg-----------------------------atctggcaaggcagggagccttgcttggcctgccggattgggcgcaagcatttttggcaatgcatcagggaacaagtttatctgtctgcaataaggcgccgaatcaccggtttttacttagcgtcgggtat-gcacagttaaat----gccctaaatgaatttttacctgaatctttagcacagcgttttcctttgctttttcctccatttattgaggaggcattgaagcaggatgctgtagaaatgtcaattttgctactggccttacaatatg-----------ctcaaaaatatcccaataccgtccccgctttcgcctgttga", "sseq_msa": 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author	nml
date	Wed, 14 Jun 2017 14:36:59 -0400
parents	ebee10be4297
children	17fcac7ddf54