# HG changeset patch
# User nml
# Date 1488569481 18000
# Node ID 9d7e381dfa5af865e1b06983639aad31e460fc47
# Parent  ebee10be4297650dc649877dd3df5d9880a7b855
planemo upload commit 9d3d0b2dc47cc803e560e396e5c13d2cfef9ed03

diff -r ebee10be4297 -r 9d7e381dfa5a sistr_cmd.xml
--- a/sistr_cmd.xml	Wed Mar 01 12:35:39 2017 -0500
+++ b/sistr_cmd.xml	Fri Mar 03 14:31:21 2017 -0500
@@ -14,13 +14,7 @@
       -i '$fasta' '${$fasta.name.replace("." + $fasta.ext, "")}'
     #end for
     -f $output_format
-    #if $output_format == "tab"
-      -o sistr-report.tab
-    #elif $output_format == "csv"
-      -o sistr-report.csv
-    #elif $output_format == "json"
-      -o sistr-report.json
-    #end if
+    -o sistr-report.$output_format
     -p $cgmlst_profiles
     -n $novel_alleles
     -a $alleles_output