comparison spades.xml @ 20:78ced22d09a2 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/spades commit a09a5e3ee3c76550526f082b97de8da75181a1dd

19:9be710099b99

                    <has_n_lines n="0"/>
                </assert_contents>
            </output>
            <output name="out_cs">
                <assert_contents>
                    <has_n_lines n="1"/>
                    <has_text_matching expression="#name&#009;length&#009;coverage"/>
                </assert_contents>
            </output>
            <output name="out_l">
                <assert_contents>
                    <has_text_matching expression="Thank you for using SPAdes!"/>

                    <has_n_lines n="18"/>
                    <has_text_matching expression=">NODE\_1\_length\_1000.+"/>
                </assert_contents>
            </output>
        </test>
    </tests>
    <help><![CDATA[
.. class:: infomark

**What it does**

20:78ced22d09a2

                    <has_n_lines n="0"/>
                </assert_contents>
            </output>
            <output name="out_cs">
                <assert_contents>
                    <has_n_lines n="2"/>
                    <has_text_matching expression="#name&#009;length&#009;coverage"/>
                    <has_text_matching expression="NODE_1&#009;1000&#009;225.723888"/>
                </assert_contents>
            </output>
            <output name="out_l">
                <assert_contents>
                    <has_text_matching expression="Thank you for using SPAdes!"/>

                    <has_n_lines n="18"/>
                    <has_text_matching expression=">NODE\_1\_length\_1000.+"/>
                </assert_contents>
            </output>
        </test>
        <!-- #17 Fix stats script -->
        <test expect_num_outputs="1">
            <conditional name="singlePaired">
                <param name="sPaired" value="single"/>
                <param name="input1" value="ecoli_1K.fastq.gz"/>
            </conditional>
            <param name="optional_output" value="ss"/>
            <output name="out_ss">
                <assert_contents>
                    <has_n_lines n="2"/>
                    <has_text text="NODE_1&#009;1000&#009;140.620106"/>
                    <has_text_matching expression="#name&#009;length&#009;coverage"/>
                </assert_contents>
            </output>
        </test>
    </tests>
    <help><![CDATA[
.. class:: infomark

**What it does**