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comparison spades.xml @ 13:b7829778729f draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/spades commit 4125a5c59656970247dea551c424171bb7623749"
author iuc
date Mon, 20 Sep 2021 09:55:41 +0000
parents 1796ea206dec
children 74f20c988994
comparison
equal deleted inserted replaced
12:1796ea206dec 13:b7829778729f
26 26
27 if [ -n "\$GALAXY_MEMORY_MB" ]; then 27 if [ -n "\$GALAXY_MEMORY_MB" ]; then
28 GALAXY_MEMORY_GB=\$(( GALAXY_MEMORY_MB / 1024 )); 28 GALAXY_MEMORY_GB=\$(( GALAXY_MEMORY_MB / 1024 ));
29 fi && 29 fi &&
30 30
31 spades.py -o . --disable-gzip-output $sc $onlyassembler $careful -t \${GALAXY_SLOTS:-16} -m \${GALAXY_MEMORY_GB:-250} 31 spades.py -o . --tmp-dir "\${TMPDIR:-.}" --disable-gzip-output $sc $onlyassembler $careful -t \${GALAXY_SLOTS:-16} -m \${GALAXY_MEMORY_GB:-250}
32 #if not $kmer_choice.auto_kmer_choice: 32 #if not $kmer_choice.auto_kmer_choice:
33 -k "$kmer_choice.kmers" 33 -k "$kmer_choice.kmers"
34 #end if 34 #end if
35 #if $cov.state == "auto": 35 #if $cov.state == "auto":
36 --cov-cutoff 'auto' 36 --cov-cutoff 'auto'