diff spades.xml @ 4:35cb17bd8bf9 draft

planemo upload commit ba4e93c036a072d6aac883bc1aba55e26256498c

--- a/spades.xml	Wed Jul 06 16:01:02 2016 -0400
+++ b/spades.xml	Mon Aug 08 15:56:56 2016 -0400
@@ -1,7 +1,7 @@
-<tool id="spades" name="spades" version="1.3.2">
+<tool id="spades" name="spades" version="1.4">
   <description>SPAdes genome assembler for regular and single-cell projects</description>
   <requirements>
-    <requirement type="package" version="3.8.0">spades</requirement>
+    <requirement type="package" version="3.9.0">spades</requirement>
   </requirements>
   <command interpreter="perl">spades.pl 
     $out_contigs 
@@ -25,7 +25,7 @@
     $careful
     -t \${GALAXY_SLOTS:-16}
 
-    #if str($kmer_choice.auto_kmer_choice) == 'False':
+    #if not $kmer_choice.auto_kmer_choice:
     -k "$kmer_choice.kmers"    
     #else
 
@@ -249,7 +249,7 @@
 
 SPAdes – St. Petersburg genome assembler – is intended for both standard isolates and single-cell MDA bacteria assemblies. See http://bioinf.spbau.ru/en/spades for more details on SPAdes.
 
-This wrapper runs SPAdes 3.8, collects the output, and throws away all the temporary files. It also produces a tab file with contig names, length and coverage. 
+This wrapper runs SPAdes 3.9, collects the output, and throws away all the temporary files. It also produces a tab file with contig names, length and coverage. 
 
 **License**