# HG changeset patch
# User iuc
# Date 1631805972 0
# Node ID 1796ea206dec3442acc217a3f468f47e592fc94a
# Parent  b8c00ce5dfa06f190cb8cbc1fed2cc74dd8a8c8e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/spades commit a66345b894a128f7cb44876cc9a51f48c5213d95"

diff -r b8c00ce5dfa0 -r 1796ea206dec spades.xml
--- a/spades.xml	Thu Nov 21 11:13:06 2019 -0500
+++ b/spades.xml	Thu Sep 16 15:26:12 2021 +0000
@@ -1,5 +1,8 @@
 <tool id="spades" name="SPAdes" version="@TOOL_VERSION@+galaxy1">
     <description>genome assembler for regular and single-cell projects</description>
+    <xrefs>
+        <xref type="bio.tools">spades</xref>
+    </xrefs>
     <macros>
         <import>macros.xml</import>
     </macros>
@@ -21,7 +24,7 @@
     <![CDATA[
     ## A real command looks like: spades.py -k 21,33,55,77,99,127 --careful -1 Y.fastq.gz -2 X.fastq.gz -t 24 -o output
 
-    if [[ -n \$GALAXY_MEMORY_MB ]]; then
+    if [ -n "\$GALAXY_MEMORY_MB" ]; then
         GALAXY_MEMORY_GB=\$(( GALAXY_MEMORY_MB / 1024 ));
     fi &&