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changeset 13:b7829778729f draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/spades commit 4125a5c59656970247dea551c424171bb7623749"
author iuc
date Mon, 20 Sep 2021 09:55:41 +0000
parents 1796ea206dec
children 74f20c988994
files spades.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/spades.xml	Thu Sep 16 15:26:12 2021 +0000
+++ b/spades.xml	Mon Sep 20 09:55:41 2021 +0000
@@ -28,7 +28,7 @@
         GALAXY_MEMORY_GB=\$(( GALAXY_MEMORY_MB / 1024 ));
     fi &&
 
-    spades.py -o . --disable-gzip-output $sc $onlyassembler $careful -t \${GALAXY_SLOTS:-16} -m \${GALAXY_MEMORY_GB:-250}
+    spades.py -o . --tmp-dir "\${TMPDIR:-.}" --disable-gzip-output $sc $onlyassembler $careful -t \${GALAXY_SLOTS:-16} -m \${GALAXY_MEMORY_GB:-250}
     #if not $kmer_choice.auto_kmer_choice:
         -k "$kmer_choice.kmers"
     #end if