Mercurial > repos > nml > spades
changeset 2:e37014a072e9 draft
planemo upload commit 733f396b6a4397c3b133bcb6fb3c10f5970db230-dirty
| author | nml |
|---|---|
| date | Tue, 31 May 2016 15:43:30 -0400 |
| parents | 80f079961dc9 |
| children | 6dff6ed33cd7 |
| files | CHANGE spades.xml tool_dependencies.xml |
| diffstat | 3 files changed, 10 insertions(+), 5 deletions(-) [+] |
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--- a/CHANGE Mon Jan 18 10:02:57 2016 -0500 +++ b/CHANGE Tue May 31 15:43:30 2016 -0400 @@ -1,3 +1,8 @@ +1.3 +=== + - Supports SPades 3.8 + - CHANGE: Improved running time and RAM consumption. + 1.2 === - Supports SPades 3.6.2
--- a/spades.xml Mon Jan 18 10:02:57 2016 -0500 +++ b/spades.xml Tue May 31 15:43:30 2016 -0400 @@ -1,7 +1,7 @@ -<tool id="spades" name="spades" version="1.2"> +<tool id="spades" name="spades" version="1.3.1"> <description>SPAdes genome assembler for regular and single-cell projects</description> <requirements> - <requirement type="package" version="3.6.2">spades</requirement> + <requirement type="package" version="3.8.0">spades</requirement> </requirements> <command interpreter="perl">spades.pl $out_contigs @@ -222,7 +222,7 @@ SPAdes – St. Petersburg genome assembler – is intended for both standard isolates and single-cell MDA bacteria assemblies. See http://bioinf.spbau.ru/en/spades for more details on SPAdes. -This wrapper runs SPAdes 3.6.2, collects the output, and throws away all the temporary files. It also produces a tab file with contig names, length and coverage. +This wrapper runs SPAdes 3.8, collects the output, and throws away all the temporary files. It also produces a tab file with contig names, length and coverage. **License**
--- a/tool_dependencies.xml Mon Jan 18 10:02:57 2016 -0500 +++ b/tool_dependencies.xml Tue May 31 15:43:30 2016 -0400 @@ -1,6 +1,6 @@ <?xml version="1.0"?> <tool_dependency> - <package name="spades" version="3.6.2"> - <repository changeset_revision="af7dfb1c3f42" name="package_spades_3_6_2" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" /> + <package name="spades" version="3.8.0"> + <repository changeset_revision="c9eab59c0bc2" name="package_spades_3_8_0" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> </tool_dependency>