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annotate tool_dependencies.xml @ 1:599a4dc309aa draft

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planemo upload commit 1ea98fb88a93a571beda5bbd56449c946860a258
author nml
date Wed, 01 Mar 2017 12:39:11 -0500
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="vfdb" version="08-07-2014">
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4 <install version="1.0">
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5 <actions_group>
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6 <actions>
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599a4dc309aa planemo upload commit 1ea98fb88a93a571beda5bbd56449c946860a258
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7 <action type="download_by_url" sha256sum="eae59df6f7aad698da5e43322c58a28c25dfe91dd656cd2ee12ea330db6aa6bb">https://github.com/mariamiskander/VirulenceFactorsDB/archive/master.zip</action>
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8 <action type="make_directory">$INSTALL_DIR/vfdb</action>
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9 <action type="move_directory_files">
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10 <source_directory>vfdb</source_directory>
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11 <destination_directory>$INSTALL_DIR/vfdb</destination_directory>
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12 </action>
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13 <action type="set_environment">
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599a4dc309aa planemo upload commit 1ea98fb88a93a571beda5bbd56449c946860a258
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14 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
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15 <environment_variable name="VF_PATH" action="set_to">$INSTALL_DIR</environment_variable>
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16 </action>
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17 <action type="shell_command">ls -lrt</action>
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18 <action type="shell_command">echo $INSTALL_DIR</action>
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19 <action type="shell_command">echo $PATH</action>
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20 </actions>
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21 </actions_group>
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22 </install>
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23 </package>
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24 </tool_dependency>