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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="vfdb" version="08-07-2014">
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4 <install version="1.0">
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5 <actions_group>
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6 <actions>
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7 <action sha256sum="eae59df6f7aad698da5e43322c58a28c25dfe91dd656cd2ee12ea330db6aa6bb" type="download_by_url">https://github.com/mariamiskander/VirulenceFactorsDB/archive/master.zip</action>
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8 <action type="make_directory">$INSTALL_DIR/vfdb</action>
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9 <action type="move_directory_files">
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10 <source_directory>vfdb</source_directory>
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11 <destination_directory>$INSTALL_DIR/vfdb</destination_directory>
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12 </action>
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13 <action type="set_environment">
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14 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
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15 <environment_variable action="set_to" name="VF_PATH">$INSTALL_DIR</environment_variable>
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16 </action>
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17 <action type="shell_command">ls -lrt</action>
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18 <action type="shell_command">echo $INSTALL_DIR</action>
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19 <action type="shell_command">echo $PATH</action>
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20 </actions>
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21 </actions_group>
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22 </install>
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23 </package>
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24
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25 <package name="srst2" version="0.1.4.6">
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26 <repository changeset_revision="79a05e500381" name="package_srst2_0_1_4_6" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" />
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27 </package>
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28 <package name="samtools" version="0.1.18">
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29 <repository changeset_revision="1409782220c9" name="package_samtools_0_1_18" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
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30 </package>
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31 <package name="bowtie2" version="2.1.0">
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32 <repository changeset_revision="017a00c265f1" name="package_bowtie2_2_1_0" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />
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33 </package>
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34 </tool_dependency>
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