Mercurial > repos > nml > srst2
diff tool_dependencies.xml @ 0:6f870ed59b6e draft
Uploaded
| author | nml |
|---|---|
| date | Mon, 06 Feb 2017 12:31:04 -0500 |
| parents | |
| children | 599a4dc309aa |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Mon Feb 06 12:31:04 2017 -0500 @@ -0,0 +1,34 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="vfdb" version="08-07-2014"> + <install version="1.0"> + <actions_group> + <actions> + <action sha256sum="eae59df6f7aad698da5e43322c58a28c25dfe91dd656cd2ee12ea330db6aa6bb" type="download_by_url">https://github.com/mariamiskander/VirulenceFactorsDB/archive/master.zip</action> + <action type="make_directory">$INSTALL_DIR/vfdb</action> + <action type="move_directory_files"> + <source_directory>vfdb</source_directory> + <destination_directory>$INSTALL_DIR/vfdb</destination_directory> + </action> + <action type="set_environment"> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable> + <environment_variable action="set_to" name="VF_PATH">$INSTALL_DIR</environment_variable> + </action> + <action type="shell_command">ls -lrt</action> + <action type="shell_command">echo $INSTALL_DIR</action> + <action type="shell_command">echo $PATH</action> + </actions> + </actions_group> + </install> + </package> + + <package name="srst2" version="0.1.4.6"> + <repository changeset_revision="79a05e500381" name="package_srst2_0_1_4_6" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="samtools" version="0.1.18"> + <repository changeset_revision="1409782220c9" name="package_samtools_0_1_18" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="bowtie2" version="2.1.0"> + <repository changeset_revision="017a00c265f1" name="package_bowtie2_2_1_0" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> +</tool_dependency>