Mercurial > repos > nml > staramr

annotate test-data/test1-detailed-summary.tsv @ 18:3b22de20bd4b draft default tip

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planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/staramr commit 1a2d7c4c5b7c0d3aac10d1d5fbd8d33550f840ed
author nml
date Tue, 19 Sep 2023 18:41:35 +0000
parents 141afacabcfa
children
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17
141afacabcfa planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/staramr commit e752f6e09372d3513de79d85baa619c5f5065303
nml
parents: 9
diff changeset
1 Isolate ID Data Data Type Predicted Phenotype CGE Predicted Phenotype %Identity %Overlap HSP Length/Total Length Contig Start End Accession
141afacabcfa planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/staramr commit e752f6e09372d3513de79d85baa619c5f5065303
nml
parents: 9
diff changeset
2 16S-rc_gyrA-rc_beta-lactam.fsa ST- (-) MLST
141afacabcfa planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/staramr commit e752f6e09372d3513de79d85baa619c5f5065303
nml
parents: 9
diff changeset
3 16S-rc_gyrA-rc_beta-lactam.fsa None Plasmid
141afacabcfa planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/staramr commit e752f6e09372d3513de79d85baa619c5f5065303
nml
parents: 9
diff changeset
4 16S-rc_gyrA-rc_beta-lactam.fsa 16S_rrsD (C1065T) Resistance spectinomycin Spectinomycin 99.94 100.0 1544/1544 16S_rrsD 1604 61
141afacabcfa planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/staramr commit e752f6e09372d3513de79d85baa619c5f5065303
nml
parents: 9
diff changeset
5 16S-rc_gyrA-rc_beta-lactam.fsa blaIMP-42 Resistance ampicillin, amoxicillin/clavulanic acid, cefoxitin, ceftriaxone, meropenem Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefepime, Cefixime, Cefotaxime, Cefoxitin, Ceftazidime, Ertapenem, Imipenem, Meropenem, Piperacillin, Piperacillin+Tazobactam 99.73 100.0 741/741 16S_rrsD 4381 5121 AB753456
141afacabcfa planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/staramr commit e752f6e09372d3513de79d85baa619c5f5065303
nml
parents: 9
diff changeset
6 16S-rc_gyrA-rc_beta-lactam.fsa gyrA (A67P) Resistance ciprofloxacin I/R, nalidixic acid Nalidixic acid,Ciprofloxacin 99.96 100.0 2637/2637 16S_rrsD 4317 1681